Wall clock time and date at job start Wed Apr 1 2020 03:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35087 * 125.90961 * 2 1 4 4 C 1.35011 * 108.02897 * 179.72166 * 3 2 1 5 5 C 1.41031 * 107.84846 * 0.42890 * 4 3 2 6 6 C 1.47857 * 126.07093 * 179.82482 * 5 4 3 7 7 C 1.36734 * 126.81795 * 180.02562 * 6 5 4 8 8 C 1.41886 * 103.81588 * 180.02562 * 7 6 5 9 9 C 1.48349 * 126.84569 * 179.89190 * 8 7 6 10 10 O 1.21496 * 119.99408 * 359.71095 * 9 8 7 11 11 N 1.34773 * 120.00317 * 179.71480 * 9 8 7 12 12 C 1.47423 * 125.64906 * 5.17900 * 11 9 8 13 13 C 1.54901 * 104.83500 * 155.89250 * 12 11 9 14 14 C 1.55159 * 101.58536 * 37.00551 * 13 12 11 15 15 C 1.47018 * 125.64861 * 185.19710 * 11 9 8 16 16 H 1.09005 * 110.01573 * 300.53401 * 15 11 9 17 17 C 1.52998 * 109.88154 * 61.62287 * 15 11 9 18 18 N 1.46499 * 109.47324 * 183.40407 * 17 15 11 19 19 C 1.36938 * 120.00392 * 175.01578 * 18 17 15 20 20 H 1.08000 * 119.99865 * 5.04579 * 19 18 17 21 21 C 1.38810 * 120.00524 * 185.04716 * 19 18 17 22 22 N 1.31621 * 120.00366 * 175.07131 * 21 19 18 23 23 Si 1.86799 * 119.99576 * 355.07656 * 21 19 18 24 24 H 1.48500 * 109.46906 * 275.10505 * 23 21 19 25 25 H 1.48495 * 109.47489 * 35.10678 * 23 21 19 26 26 H 1.48510 * 109.47055 * 155.10834 * 23 21 19 27 27 N 1.31100 * 106.31537 * 359.63598 * 8 7 6 28 28 O 1.20873 * 111.76432 * 0.23328 * 27 8 7 29 29 N 1.31826 * 107.86333 * 359.56589 * 5 4 3 30 30 H 1.08997 * 109.47395 * 269.97621 * 1 2 3 31 31 H 1.09003 * 109.46800 * 29.97877 * 1 2 3 32 32 H 1.08995 * 109.47213 * 149.97468 * 1 2 3 33 33 H 1.08003 * 125.98534 * 0.02562 * 3 2 1 34 34 H 1.08003 * 126.07308 * 180.25925 * 4 3 2 35 35 H 1.07998 * 128.09313 * 359.97294 * 7 6 5 36 36 H 1.08997 * 110.36895 * 37.04330 * 12 11 9 37 37 H 1.09003 * 110.45423 * 274.77574 * 12 11 9 38 38 H 1.08997 * 111.00695 * 278.93277 * 13 12 11 39 39 H 1.08999 * 111.00758 * 155.08127 * 13 12 11 40 40 H 1.08993 * 110.72373 * 206.13964 * 14 13 12 41 41 H 1.09005 * 110.72066 * 82.85641 * 14 13 12 42 42 H 1.09000 * 109.47565 * 63.39780 * 17 15 11 43 43 H 1.09009 * 109.47021 * 303.39901 * 17 15 11 44 44 H 0.97003 * 119.99904 * 355.01524 * 18 17 15 45 45 H 0.97001 * 119.99772 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2573 1.0941 0.0000 4 6 3.5422 0.6796 0.0062 5 6 3.5414 -0.7307 0.0002 6 6 4.7361 -1.6019 0.0003 7 6 4.7532 -2.9691 -0.0060 8 6 6.1351 -3.2907 -0.0021 9 6 6.7325 -4.6486 -0.0039 10 8 6.0139 -5.6283 -0.0038 11 7 8.0722 -4.7955 -0.0055 12 6 9.0564 -3.7033 0.1025 13 6 10.3333 -4.3744 0.6668 14 6 10.3024 -5.7521 -0.0462 15 6 8.7941 -6.0715 -0.1155 16 1 8.5163 -6.7295 0.7079 17 6 8.4651 -6.7420 -1.4508 18 7 9.1240 -8.0488 -1.5165 19 6 8.8917 -8.8801 -2.5796 20 1 8.2881 -8.5409 -3.4085 21 6 9.4320 -10.1587 -2.5920 22 7 9.1302 -10.9913 -3.5657 23 14 10.5872 -10.6976 -1.2266 24 1 11.9701 -10.2617 -1.5474 25 1 10.1593 -10.0827 0.0555 26 1 10.5508 -12.1771 -1.1025 27 7 6.7790 -2.1487 -0.0023 28 8 6.0213 -1.2070 -0.0011 29 7 2.2865 -1.1344 0.0002 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.9217 2.1207 0.0004 34 1 4.4154 1.3151 0.0118 35 1 3.9116 -3.6460 -0.0116 36 1 8.6972 -2.9351 0.7873 37 1 9.2563 -3.2723 -0.8786 38 1 10.2671 -4.4927 1.7483 39 1 11.2251 -3.8116 0.3909 40 1 10.8289 -6.5031 0.5426 41 1 10.7272 -5.6778 -1.0474 42 1 8.8189 -6.1150 -2.2692 43 1 7.3863 -6.8745 -1.5347 44 1 9.7249 -8.3252 -0.8070 45 1 9.5075 -11.8849 -3.5740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482057285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:12 Heat of formation + Delta-G solvation = 144.435284 kcal Electronic energy + Delta-G solvation = -29171.155381 eV Core-core repulsion = 25002.342920 eV Total energy + Delta-G solvation = -4168.812461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -45.26532 -41.61200 -40.08912 -37.53347 -34.75564 -34.63326 -34.04270 -32.12813 -31.50850 -31.32242 -30.61238 -29.14992 -27.25595 -25.61799 -24.95967 -23.60415 -22.88918 -21.91439 -21.70908 -21.30816 -20.42625 -19.03298 -18.11410 -18.05807 -17.47256 -17.11259 -16.66556 -16.36626 -15.97558 -15.22720 -14.94347 -14.42515 -14.34924 -14.27421 -14.10002 -13.92220 -13.58427 -13.39990 -13.19163 -13.06946 -13.00521 -12.91283 -12.64888 -12.36050 -11.96713 -11.72709 -11.27637 -11.25718 -11.07542 -10.88615 -10.84774 -10.72328 -10.56780 -10.49941 -10.21056 -10.05046 -9.55533 -9.45025 -8.93426 -8.80483 -8.57965 -7.17715 -5.70824 -3.06420 0.50922 1.19132 1.55643 1.67264 2.58738 2.60274 2.76665 3.15009 3.41401 3.43613 3.48930 3.71271 3.98517 4.05438 4.34589 4.56314 4.60384 4.62627 4.64415 4.70809 4.75845 4.89197 4.94213 5.01645 5.10298 5.23664 5.30362 5.40199 5.45173 5.56935 5.60504 5.64953 5.70154 5.78637 5.87326 5.90657 5.95834 6.01003 6.27768 6.37654 6.39714 6.72701 6.87641 7.01052 7.44754 7.70580 8.04249 8.10978 8.47648 9.26376 9.98169 10.18416 11.47506 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.002140 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.172898 B =13082.820856 C =14205.242132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.365 5.365 3 C 0.058 3.942 4 C -0.245 4.245 5 C 0.139 3.861 6 C 0.037 3.963 7 C -0.138 4.138 8 C -0.012 4.012 9 C 0.608 3.392 10 O -0.506 6.506 11 N -0.597 5.597 12 C 0.101 3.899 13 C -0.133 4.133 14 C -0.126 4.126 15 C 0.127 3.873 16 H 0.081 0.919 17 C 0.150 3.850 18 N -0.750 5.750 19 C -0.241 4.241 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.883 3.117 24 H -0.283 1.283 25 H -0.277 1.277 26 H -0.291 1.291 27 N -0.321 5.321 28 O 0.135 5.865 29 N -0.258 5.258 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.183 0.817 34 H 0.159 0.841 35 H 0.187 0.813 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.025 0.975 43 H 0.045 0.955 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.115 31.427 11.514 35.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.148 5.148 3 C -0.087 4.087 4 C -0.274 4.274 5 C -0.025 4.025 6 C -0.028 4.028 7 C -0.163 4.163 8 C -0.170 4.170 9 C 0.393 3.607 10 O -0.379 6.379 11 N -0.331 5.331 12 C -0.022 4.022 13 C -0.171 4.171 14 C -0.164 4.164 15 C 0.025 3.975 16 H 0.099 0.901 17 C 0.022 3.978 18 N -0.396 5.396 19 C -0.371 4.371 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.204 1.204 26 H -0.217 1.217 27 N -0.021 5.021 28 O 0.058 5.942 29 N -0.084 5.084 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.200 0.800 34 H 0.177 0.823 35 H 0.205 0.795 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.192 0.808 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.321 30.063 11.295 34.397 hybrid contribution 0.553 -0.076 0.836 1.006 sum -11.767 29.987 12.132 34.422 Atomic orbital electron populations 1.21989 0.73247 1.05076 1.03907 1.48564 1.06974 1.03322 1.55973 1.22557 0.90716 0.93710 1.01722 1.21558 0.97771 0.93191 1.14881 1.18787 0.88749 0.91713 1.03288 1.20738 0.84265 0.91434 1.06383 1.22677 0.96783 0.93735 1.03075 1.23370 0.92481 0.94026 1.07151 1.16413 0.80994 0.85445 0.77879 1.90876 1.59821 1.38058 1.49193 1.48279 1.04174 1.09469 1.71216 1.22462 0.88365 0.89720 1.01654 1.22806 0.97189 0.96670 1.00464 1.22742 0.94500 0.96779 1.02369 1.21933 0.91109 0.84250 1.00226 0.90079 1.20929 0.97561 0.86966 0.92362 1.42495 1.54795 1.16354 1.25928 1.19029 1.27496 0.93493 0.97035 0.89270 1.24669 1.00799 0.95841 0.97863 1.69717 1.47780 1.06887 1.33741 0.86581 0.81652 0.77853 0.82551 1.20957 1.20357 1.21717 1.74254 1.16237 0.95574 1.15999 1.84867 1.12749 1.30503 1.66103 1.77720 0.99832 1.07403 1.23467 0.90220 0.88927 0.88800 0.80043 0.82311 0.79543 0.89842 0.90914 0.90738 0.89648 0.89894 0.89473 0.95702 0.93732 0.80786 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.26 11.46 59.85 0.69 0.94 16 2 N -0.36 -2.50 4.01 -68.21 -0.27 -2.78 16 3 C 0.06 0.30 11.46 -17.27 -0.20 0.11 16 4 C -0.24 -1.78 10.77 -39.67 -0.43 -2.20 16 5 C 0.14 1.41 7.11 -82.88 -0.59 0.82 16 6 C 0.04 0.41 7.35 -36.19 -0.27 0.15 16 7 C -0.14 -1.79 10.94 -38.73 -0.42 -2.21 16 8 C -0.01 -0.18 6.99 -82.62 -0.58 -0.76 16 9 C 0.61 10.52 7.60 -12.10 -0.09 10.43 16 10 O -0.51 -10.52 16.14 5.37 0.09 -10.44 16 11 N -0.60 -9.49 3.06 -163.94 -0.50 -9.99 16 12 C 0.10 1.24 6.00 -2.53 -0.02 1.22 16 13 C -0.13 -1.43 7.08 -24.59 -0.17 -1.61 16 14 C -0.13 -1.76 6.01 -24.89 -0.15 -1.91 16 15 C 0.13 2.22 2.94 -66.95 -0.20 2.02 16 16 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 17 C 0.15 3.26 5.64 -4.04 -0.02 3.24 16 18 N -0.75 -18.88 5.24 -59.91 -0.31 -19.19 16 19 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 20 H 0.09 2.87 8.06 -52.49 -0.42 2.45 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -30.28 13.97 55.49 0.78 -29.51 16 23 Si 0.88 22.68 27.66 -169.99 -4.70 17.97 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.73 6.63 56.52 0.37 -6.35 16 26 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 27 N -0.32 -4.10 9.42 33.35 0.31 -3.78 16 28 O 0.13 1.51 11.20 16.08 0.18 1.69 16 29 N -0.26 -2.71 12.60 33.36 0.42 -2.29 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.18 0.18 8.06 -52.48 -0.42 -0.25 16 34 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.19 2.32 8.06 -52.49 -0.42 1.90 16 36 H 0.08 0.96 6.56 -51.93 -0.34 0.62 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.28 7.79 -51.93 -0.40 0.87 16 42 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 43 H 0.04 1.09 6.93 -51.92 -0.36 0.73 16 44 H 0.36 8.61 5.34 -40.82 -0.22 8.40 16 45 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -38.04 381.86 -6.94 -44.98 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.98 Total: 4.66 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.70 Total: 2.92 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: 0.42 Total: -67.55 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.27 Total: -8.75 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.70 Total: 17.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.04 -6.94 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482057285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.418 kcal (2) G-P(sol) polarization free energy of solvation -38.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds