Wall clock time and date at job start Wed Apr 1 2020 03:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35087 * 125.90961 * 2 1 4 4 C 1.35011 * 108.02897 * 179.72166 * 3 2 1 5 5 C 1.41031 * 107.84846 * 0.42890 * 4 3 2 6 6 C 1.47857 * 126.07093 * 179.82482 * 5 4 3 7 7 C 1.36734 * 126.81795 * 180.02562 * 6 5 4 8 8 C 1.41886 * 103.81588 * 180.02562 * 7 6 5 9 9 C 1.48349 * 126.84569 * 179.89190 * 8 7 6 10 10 O 1.21496 * 119.99408 * 359.71095 * 9 8 7 11 11 N 1.34773 * 120.00317 * 179.71480 * 9 8 7 12 12 C 1.47423 * 125.64906 * 5.17900 * 11 9 8 13 13 C 1.54901 * 104.83500 * 155.89250 * 12 11 9 14 14 C 1.55159 * 101.58536 * 37.00551 * 13 12 11 15 15 C 1.47018 * 125.64861 * 185.19710 * 11 9 8 16 16 H 1.09005 * 110.01573 * 300.53401 * 15 11 9 17 17 C 1.52998 * 109.88154 * 61.62287 * 15 11 9 18 18 N 1.46499 * 109.47324 * 183.40407 * 17 15 11 19 19 C 1.36938 * 120.00392 * 175.01578 * 18 17 15 20 20 H 1.08000 * 119.99865 * 5.04579 * 19 18 17 21 21 C 1.38810 * 120.00524 * 185.04716 * 19 18 17 22 22 N 1.31621 * 120.00366 * 175.07131 * 21 19 18 23 23 Si 1.86799 * 119.99576 * 355.07656 * 21 19 18 24 24 H 1.48500 * 109.46906 * 275.10505 * 23 21 19 25 25 H 1.48495 * 109.47489 * 35.10678 * 23 21 19 26 26 H 1.48510 * 109.47055 * 155.10834 * 23 21 19 27 27 N 1.31100 * 106.31537 * 359.63598 * 8 7 6 28 28 O 1.20873 * 111.76432 * 0.23328 * 27 8 7 29 29 N 1.31826 * 107.86333 * 359.56589 * 5 4 3 30 30 H 1.08997 * 109.47395 * 269.97621 * 1 2 3 31 31 H 1.09003 * 109.46800 * 29.97877 * 1 2 3 32 32 H 1.08995 * 109.47213 * 149.97468 * 1 2 3 33 33 H 1.08003 * 125.98534 * 0.02562 * 3 2 1 34 34 H 1.08003 * 126.07308 * 180.25925 * 4 3 2 35 35 H 1.07998 * 128.09313 * 359.97294 * 7 6 5 36 36 H 1.08997 * 110.36895 * 37.04330 * 12 11 9 37 37 H 1.09003 * 110.45423 * 274.77574 * 12 11 9 38 38 H 1.08997 * 111.00695 * 278.93277 * 13 12 11 39 39 H 1.08999 * 111.00758 * 155.08127 * 13 12 11 40 40 H 1.08993 * 110.72373 * 206.13964 * 14 13 12 41 41 H 1.09005 * 110.72066 * 82.85641 * 14 13 12 42 42 H 1.09000 * 109.47565 * 63.39780 * 17 15 11 43 43 H 1.09009 * 109.47021 * 303.39901 * 17 15 11 44 44 H 0.97003 * 119.99904 * 355.01524 * 18 17 15 45 45 H 0.97001 * 119.99772 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2573 1.0941 0.0000 4 6 3.5422 0.6796 0.0062 5 6 3.5414 -0.7307 0.0002 6 6 4.7361 -1.6019 0.0003 7 6 4.7532 -2.9691 -0.0060 8 6 6.1351 -3.2907 -0.0021 9 6 6.7325 -4.6486 -0.0039 10 8 6.0139 -5.6283 -0.0038 11 7 8.0722 -4.7955 -0.0055 12 6 9.0564 -3.7033 0.1025 13 6 10.3333 -4.3744 0.6668 14 6 10.3024 -5.7521 -0.0462 15 6 8.7941 -6.0715 -0.1155 16 1 8.5163 -6.7295 0.7079 17 6 8.4651 -6.7420 -1.4508 18 7 9.1240 -8.0488 -1.5165 19 6 8.8917 -8.8801 -2.5796 20 1 8.2881 -8.5409 -3.4085 21 6 9.4320 -10.1587 -2.5920 22 7 9.1302 -10.9913 -3.5657 23 14 10.5872 -10.6976 -1.2266 24 1 11.9701 -10.2617 -1.5474 25 1 10.1593 -10.0827 0.0555 26 1 10.5508 -12.1771 -1.1025 27 7 6.7790 -2.1487 -0.0023 28 8 6.0213 -1.2070 -0.0011 29 7 2.2865 -1.1344 0.0002 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 1.9217 2.1207 0.0004 34 1 4.4154 1.3151 0.0118 35 1 3.9116 -3.6460 -0.0116 36 1 8.6972 -2.9351 0.7873 37 1 9.2563 -3.2723 -0.8786 38 1 10.2671 -4.4927 1.7483 39 1 11.2251 -3.8116 0.3909 40 1 10.8289 -6.5031 0.5426 41 1 10.7272 -5.6778 -1.0474 42 1 8.8189 -6.1150 -2.2692 43 1 7.3863 -6.8745 -1.5347 44 1 9.7249 -8.3252 -0.8070 45 1 9.5075 -11.8849 -3.5740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482057285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:09 Heat of formation + Delta-G solvation = 116.998664 kcal Electronic energy + Delta-G solvation = -29172.345122 eV Core-core repulsion = 25002.342920 eV Total energy + Delta-G solvation = -4170.002202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.28783 -42.14392 -41.40749 -38.89665 -36.66668 -35.45722 -35.02037 -33.73094 -32.93086 -32.33819 -31.17437 -30.79786 -27.73137 -26.96331 -26.50837 -24.51625 -24.25959 -23.54519 -22.61208 -21.84290 -21.66461 -20.39149 -19.50702 -19.06997 -18.80376 -18.26681 -17.64725 -17.38931 -16.62521 -16.51413 -16.41690 -15.76904 -15.75373 -15.47345 -15.14883 -15.02411 -14.81231 -14.65437 -14.33235 -14.10920 -13.86490 -13.78632 -13.74480 -13.33136 -13.27647 -13.11934 -12.96008 -12.82507 -12.29464 -12.10350 -11.91493 -11.86064 -11.85185 -11.74922 -11.68639 -11.55782 -11.50538 -11.01246 -10.10420 -9.92825 -9.53263 -9.40131 -8.07695 -5.44200 -0.38999 0.10452 1.03418 1.06330 1.34929 1.41271 1.45049 1.48992 1.81339 1.95099 1.98373 2.45503 2.57720 3.11809 3.20837 3.48110 3.53060 3.58633 3.67248 3.68987 3.86660 3.91392 4.08115 4.15027 4.18327 4.21123 4.41091 4.47413 4.61012 4.61953 4.66717 4.73986 4.76898 4.78441 4.80028 4.92654 4.93067 5.02300 5.06677 5.23265 5.30633 5.36645 5.67488 6.04695 6.13366 6.18770 6.42926 6.63766 6.82904 7.00208 7.71184 7.96574 9.13625 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.002140 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.172898 B =13082.820856 C =14205.242132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.362 5.362 3 C 0.075 3.925 4 C -0.258 4.258 5 C 0.110 3.890 6 C 0.059 3.941 7 C -0.159 4.159 8 C -0.029 4.029 9 C 0.601 3.399 10 O -0.556 6.556 11 N -0.596 5.596 12 C 0.095 3.905 13 C -0.116 4.116 14 C -0.123 4.123 15 C 0.132 3.868 16 H 0.070 0.930 17 C 0.155 3.845 18 N -0.745 5.745 19 C -0.245 4.245 20 H 0.046 0.954 21 C -0.063 4.063 22 N -0.981 5.981 23 Si 0.962 3.038 24 H -0.263 1.263 25 H -0.253 1.253 26 H -0.293 1.293 27 N -0.315 5.315 28 O 0.155 5.845 29 N -0.303 5.303 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.024 0.976 43 H 0.007 0.993 44 H 0.370 0.630 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.935 35.036 13.795 39.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.146 5.146 3 C -0.070 4.070 4 C -0.287 4.287 5 C -0.052 4.052 6 C -0.006 4.006 7 C -0.184 4.184 8 C -0.186 4.186 9 C 0.388 3.612 10 O -0.433 6.433 11 N -0.329 5.329 12 C -0.026 4.026 13 C -0.153 4.153 14 C -0.161 4.161 15 C 0.028 3.972 16 H 0.088 0.912 17 C 0.027 3.973 18 N -0.392 5.392 19 C -0.376 4.376 20 H 0.064 0.936 21 C -0.254 4.254 22 N -0.631 5.631 23 Si 0.787 3.213 24 H -0.188 1.188 25 H -0.177 1.177 26 H -0.220 1.220 27 N -0.013 5.013 28 O 0.075 5.925 29 N -0.131 5.131 30 H 0.110 0.890 31 H 0.147 0.853 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.195 0.805 35 H 0.199 0.801 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.042 0.958 43 H 0.025 0.975 44 H 0.204 0.796 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.101 33.718 13.597 38.013 hybrid contribution -0.046 -1.032 0.020 1.033 sum -11.147 32.686 13.617 37.122 Atomic orbital electron populations 1.22370 0.71057 1.06494 1.05189 1.48976 1.08257 1.02910 1.54485 1.23318 0.89716 0.95112 0.98860 1.21904 0.99617 0.91850 1.15281 1.18873 0.88171 0.92970 1.05217 1.20883 0.84556 0.90955 1.04203 1.22657 0.96196 0.94720 1.04801 1.23000 0.93082 0.93239 1.09256 1.16832 0.81319 0.86047 0.77015 1.90835 1.61078 1.39856 1.51510 1.48414 1.04292 1.10064 1.70169 1.22742 0.88291 0.89042 1.02502 1.22825 0.97299 0.94356 1.00840 1.22745 0.91108 0.99322 1.02929 1.21791 0.94027 0.84757 0.96610 0.91199 1.20900 0.95012 0.85987 0.95408 1.42336 1.55141 1.16853 1.24866 1.18931 1.26837 0.94546 0.97303 0.93636 1.25636 1.02912 0.95631 1.01237 1.69917 1.49359 1.07410 1.36405 0.85341 0.79407 0.77035 0.79499 1.18835 1.17729 1.21985 1.74207 1.16285 0.95070 1.15691 1.84843 1.12784 1.29720 1.65149 1.77639 1.00525 1.09962 1.24975 0.88976 0.85325 0.89613 0.75236 0.80517 0.80126 0.88651 0.90423 0.89298 0.86393 0.88511 0.90052 0.95848 0.97457 0.79578 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.26 11.46 127.77 1.46 1.72 16 2 N -0.36 -4.26 4.01 -369.71 -1.48 -5.75 16 3 C 0.08 0.54 11.46 83.45 0.96 1.49 16 4 C -0.26 -3.17 10.77 22.21 0.24 -2.93 16 5 C 0.11 2.19 7.11 42.38 0.30 2.50 16 6 C 0.06 1.35 7.35 24.47 0.18 1.53 16 7 C -0.16 -4.38 10.94 22.82 0.25 -4.13 16 8 C -0.03 -0.88 6.99 42.85 0.30 -0.58 16 9 C 0.60 21.91 7.60 86.94 0.66 22.57 16 10 O -0.56 -24.96 16.14 -3.70 -0.06 -25.02 16 11 N -0.60 -19.12 3.06 -790.89 -2.42 -21.54 16 12 C 0.10 2.16 6.00 86.85 0.52 2.68 16 13 C -0.12 -2.06 7.08 31.98 0.23 -1.84 16 14 C -0.12 -3.15 6.01 31.78 0.19 -2.96 16 15 C 0.13 4.59 2.94 45.34 0.13 4.72 16 16 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 17 C 0.15 7.02 5.64 86.38 0.49 7.51 16 18 N -0.75 -38.17 5.24 -343.45 -1.80 -39.97 16 19 C -0.25 -15.22 10.47 84.03 0.88 -14.34 16 20 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 21 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.98 -65.65 13.97 21.65 0.30 -65.35 16 23 Si 0.96 46.66 27.66 68.60 1.90 48.56 16 24 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.25 -11.15 6.63 99.48 0.66 -10.49 16 26 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 27 N -0.32 -7.91 9.42 -48.99 -0.46 -8.37 16 28 O 0.15 3.35 11.20 67.74 0.76 4.11 16 29 N -0.30 -6.35 12.60 -48.36 -0.61 -6.96 16 30 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.13 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.23 -0.81 8.06 -2.91 -0.02 -0.83 16 34 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 35 H 0.18 5.06 8.06 -2.91 -0.02 5.03 16 36 H 0.10 1.97 6.56 -2.39 -0.02 1.96 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.08 2.21 7.79 -2.38 -0.02 2.19 16 42 H 0.02 1.07 8.06 -2.39 -0.02 1.05 16 43 H 0.01 0.39 6.93 -2.38 -0.02 0.37 16 44 H 0.37 17.32 5.34 -92.71 -0.50 16.83 16 45 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 Total: -1.00 -89.07 381.86 3.87 -85.21 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.49 Total: 20.55 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 7.26 Total: 14.53 kcal Atomic # 7 Polarization: -141.47 SS G_CDS: -6.48 Total: -147.95 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.70 Total: -20.91 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.90 Total: 48.56 kcal Total: -89.07 3.87 -85.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482057285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.207 kcal (2) G-P(sol) polarization free energy of solvation -89.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds