Wall clock time and date at job start Wed Apr 1 2020 04:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00452 * 2 1 4 4 C 1.52995 * 109.46873 * 269.99586 * 3 2 1 5 5 H 1.08996 * 109.47614 * 305.00067 * 4 3 2 6 6 O 1.42899 * 109.47293 * 64.99966 * 4 3 2 7 7 C 1.52999 * 109.47406 * 184.99721 * 4 3 2 8 8 N 1.46499 * 109.47577 * 179.97438 * 7 4 3 9 9 C 1.36936 * 119.99660 * 179.72405 * 8 7 4 10 10 H 1.07991 * 120.00745 * 0.28149 * 9 8 7 11 11 C 1.38821 * 119.99533 * 180.27722 * 9 8 7 12 12 N 1.31619 * 120.00033 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99859 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47030 * 90.00214 * 13 11 9 15 15 H 1.48501 * 109.46644 * 209.99846 * 13 11 9 16 16 H 1.48489 * 109.47308 * 329.99741 * 13 11 9 17 17 C 1.34779 * 119.99736 * 179.97438 * 2 1 3 18 18 O 1.21576 * 120.00022 * 175.50161 * 17 2 1 19 19 C 1.47666 * 119.99828 * 355.50499 * 17 2 1 20 20 C 1.40224 * 120.49718 * 40.72450 * 19 17 2 21 21 C 1.38039 * 118.35677 * 179.79889 * 20 19 17 22 22 C 1.39151 * 119.25067 * 0.45459 * 21 20 19 23 23 N 1.39496 * 119.52494 * 179.76385 * 22 21 20 24 24 C 1.35920 * 126.10460 * 180.02562 * 23 22 21 25 25 C 1.35245 * 107.60669 * 180.02562 * 24 23 22 26 26 C 1.40002 * 107.96793 * 0.02562 * 25 24 23 27 27 N 1.30794 * 108.37740 * 359.71378 * 26 25 24 28 28 N 1.32439 * 120.94574 * 359.78518 * 22 21 20 29 29 C 1.31626 * 121.80056 * 359.97438 * 28 22 21 30 30 H 1.09002 * 109.46960 * 95.17353 * 1 2 3 31 31 H 1.08994 * 109.47839 * 215.17418 * 1 2 3 32 32 H 1.08999 * 109.46823 * 335.18059 * 1 2 3 33 33 H 1.08999 * 109.46984 * 150.00035 * 3 2 1 34 34 H 1.08996 * 109.46726 * 29.99465 * 3 2 1 35 35 H 0.96704 * 114.00545 * 59.99715 * 6 4 3 36 36 H 1.09010 * 109.46898 * 59.99994 * 7 4 3 37 37 H 1.08996 * 109.47017 * 300.00712 * 7 4 3 38 38 H 0.96996 * 119.99476 * 0.02562 * 8 7 4 39 39 H 0.96991 * 120.00209 * 180.02562 * 12 11 9 40 40 H 1.07999 * 120.82379 * 0.02562 * 20 19 17 41 41 H 1.08003 * 120.37050 * 180.21664 * 21 20 19 42 42 H 1.07997 * 126.19500 * 0.02844 * 24 23 22 43 43 H 1.07994 * 126.01502 * 179.97438 * 25 24 23 44 44 H 1.08007 * 125.80839 * 180.02562 * 26 25 24 45 45 H 1.08003 * 119.68035 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4527 1.7102 -1.4425 5 1 2.9643 0.9129 -1.9815 6 8 1.2063 1.9934 -2.0815 7 6 3.3240 2.9679 -1.4444 8 7 3.5688 3.3903 -2.8257 9 6 4.3248 4.5040 -3.0772 10 1 4.7443 5.0684 -2.2576 11 6 4.5519 4.9076 -4.3858 12 7 5.2781 5.9784 -4.6277 13 14 3.8257 3.9318 -5.8035 14 1 2.4804 4.4666 -6.1347 15 1 4.7109 4.0494 -6.9900 16 1 3.7085 2.5040 -5.4130 17 6 2.1388 -1.1673 0.0005 18 8 3.3518 -1.1690 -0.0821 19 6 1.4038 -2.4440 0.1013 20 6 0.2043 -2.6319 -0.6003 21 6 -0.4441 -3.8444 -0.4774 22 6 0.1039 -4.8288 0.3392 23 7 -0.5491 -6.0544 0.4713 24 6 -0.1361 -7.1043 1.2293 25 6 -1.0441 -8.0960 1.0839 26 6 -2.0420 -7.6436 0.2124 27 7 -1.7500 -6.4212 -0.1498 28 7 1.2364 -4.6187 0.9930 29 6 1.8895 -3.4797 0.9007 30 1 -0.3633 -0.0927 -1.0235 31 1 -0.3634 -0.8399 0.5919 32 1 -0.3633 0.9328 0.4314 33 1 3.1500 1.1383 0.5138 34 1 1.6085 2.0283 0.5137 35 1 0.6957 2.6949 -1.6544 36 1 4.2748 2.7519 -0.9570 37 1 2.8123 3.7652 -0.9054 38 1 3.1917 2.8836 -3.5618 39 1 5.4365 6.2606 -5.5420 40 1 -0.2003 -1.8488 -1.2243 41 1 -1.3683 -4.0254 -1.0062 42 1 0.7556 -7.1401 1.8376 43 1 -1.0056 -9.0665 1.5562 44 1 -2.9083 -8.2062 -0.1029 45 1 2.8100 -3.3451 1.4494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486292947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:21 Heat of formation + Delta-G solvation = 46.038976 kcal Electronic energy + Delta-G solvation = -28942.089678 eV Core-core repulsion = 24769.010433 eV Total energy + Delta-G solvation = -4173.079245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.68250 -41.73927 -40.38453 -38.84688 -36.65163 -35.94346 -34.82728 -33.87521 -33.48728 -31.78215 -31.16185 -30.53179 -28.15080 -27.32937 -25.50065 -25.12994 -24.09246 -22.82441 -22.35646 -21.83799 -20.96254 -19.82454 -19.54509 -18.55410 -17.99324 -17.46015 -17.23056 -16.74581 -16.63813 -16.56564 -16.42950 -15.95594 -15.42565 -15.40949 -15.21130 -15.04793 -14.74769 -14.63836 -14.44137 -14.31454 -13.92282 -13.79538 -13.76252 -13.66612 -13.30804 -13.17828 -12.84070 -12.58093 -12.29709 -11.97735 -11.94992 -11.87291 -11.62727 -11.38256 -11.22511 -11.13115 -11.03945 -10.80751 -10.29013 -9.69509 -9.40468 -9.32714 -8.05785 -5.38473 -0.79231 -0.05939 0.81378 0.99204 1.36612 1.38147 1.46076 1.57938 1.79068 1.82956 2.45586 2.52074 3.04294 3.25111 3.27858 3.33691 3.37877 3.59813 3.65732 3.78419 3.93782 4.01018 4.02764 4.09680 4.21225 4.31832 4.37021 4.53309 4.54165 4.60086 4.65454 4.71888 4.74425 4.78885 4.91433 4.94492 5.00861 5.12989 5.18771 5.40835 5.55030 5.71889 5.92082 6.16008 6.18359 6.25187 6.68448 6.87364 6.95080 7.05678 7.82228 8.00189 9.15484 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.001914 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.611128 B =14621.839582 C =15006.826333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.594 5.594 3 C 0.096 3.904 4 C 0.100 3.900 5 H 0.071 0.929 6 O -0.561 6.561 7 C 0.125 3.875 8 N -0.754 5.754 9 C -0.236 4.236 10 H 0.060 0.940 11 C -0.061 4.061 12 N -0.981 5.981 13 Si 0.956 3.044 14 H -0.274 1.274 15 H -0.295 1.295 16 H -0.264 1.264 17 C 0.561 3.439 18 O -0.571 6.571 19 C -0.202 4.202 20 C -0.009 4.009 21 C -0.172 4.172 22 C 0.377 3.623 23 N -0.346 5.346 24 C 0.058 3.942 25 C -0.254 4.254 26 C 0.072 3.928 27 N -0.317 5.317 28 N -0.520 5.520 29 C 0.187 3.813 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.388 0.612 36 H 0.028 0.972 37 H 0.048 0.952 38 H 0.366 0.634 39 H 0.258 0.742 40 H 0.177 0.823 41 H 0.164 0.836 42 H 0.193 0.807 43 H 0.187 0.813 44 H 0.230 0.770 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.071 -28.320 16.560 38.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.325 5.325 3 C -0.028 4.028 4 C 0.040 3.960 5 H 0.089 0.911 6 O -0.368 6.368 7 C -0.002 4.002 8 N -0.400 5.400 9 C -0.367 4.367 10 H 0.078 0.922 11 C -0.253 4.253 12 N -0.631 5.631 13 Si 0.784 3.216 14 H -0.200 1.200 15 H -0.222 1.222 16 H -0.189 1.189 17 C 0.349 3.651 18 O -0.451 6.451 19 C -0.208 4.208 20 C -0.035 4.035 21 C -0.194 4.194 22 C 0.149 3.851 23 N -0.125 5.125 24 C -0.081 4.081 25 C -0.282 4.282 26 C -0.117 4.117 27 N -0.135 5.135 28 N -0.233 5.233 29 C 0.028 3.972 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.237 0.763 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.199 0.801 39 H 0.067 0.933 40 H 0.194 0.806 41 H 0.181 0.819 42 H 0.210 0.790 43 H 0.204 0.796 44 H 0.246 0.754 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -20.136 -28.214 16.047 38.197 hybrid contribution 0.164 0.255 -0.744 0.803 sum -19.972 -27.959 15.303 37.614 Atomic orbital electron populations 1.22400 0.76808 1.05175 1.03058 1.47675 1.08645 1.04694 1.71447 1.22167 0.99244 0.85456 0.95893 1.22234 0.84671 0.95270 0.93869 0.91102 1.86546 1.31875 1.60196 1.58223 1.21438 0.97612 0.95322 0.85869 1.42602 1.62512 1.31201 1.03716 1.19075 1.22986 1.01754 0.92860 0.92158 1.25463 1.01075 0.98928 0.99848 1.69869 1.45462 1.27821 1.19988 0.85389 0.77985 0.79097 0.79111 1.20005 1.22178 1.18945 1.18287 0.86507 0.84143 0.76190 1.90836 1.15302 1.87648 1.51319 1.20776 0.98625 0.96394 1.04989 1.22182 0.90529 0.96884 0.93891 1.21667 1.03733 0.92564 1.01402 1.18189 0.89516 0.84428 0.92927 1.45938 1.18869 1.10330 1.37324 1.23407 1.01499 0.87065 0.96128 1.22134 0.96497 1.02653 1.06895 1.24934 1.00468 0.91470 0.94835 1.77451 0.97472 1.17441 1.21113 1.66969 1.07538 1.24446 1.24391 1.22759 0.96931 0.84689 0.92838 0.90807 0.90101 0.88131 0.89762 0.85866 0.76257 0.95422 0.93428 0.80078 0.93277 0.80552 0.81855 0.79030 0.79604 0.75418 0.80084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 8.57 127.77 1.09 1.78 16 2 N -0.59 -11.03 2.84 -850.42 -2.41 -13.44 16 3 C 0.10 1.96 5.07 86.38 0.44 2.40 16 4 C 0.10 2.85 3.30 30.59 0.10 2.95 16 5 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 6 O -0.56 -14.42 12.64 -148.98 -1.88 -16.30 16 7 C 0.12 4.53 5.92 86.38 0.51 5.05 16 8 N -0.75 -36.14 5.30 -343.45 -1.82 -37.96 16 9 C -0.24 -13.73 10.47 84.04 0.88 -12.85 16 10 H 0.06 3.79 8.06 -2.92 -0.02 3.77 16 11 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 12 N -0.98 -63.75 13.97 21.65 0.30 -63.45 16 13 Si 0.96 47.53 27.74 68.60 1.90 49.43 16 14 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 16 H -0.26 -12.42 6.52 99.48 0.65 -11.77 16 17 C 0.56 13.30 7.34 86.73 0.64 13.94 16 18 O -0.57 -18.62 16.57 -3.96 -0.07 -18.68 16 19 C -0.20 -3.84 5.18 -19.99 -0.10 -3.94 16 20 C -0.01 -0.13 7.72 22.71 0.18 0.04 16 21 C -0.17 -2.77 9.68 22.44 0.22 -2.55 16 22 C 0.38 7.36 7.55 132.89 1.00 8.36 16 23 N -0.35 -6.48 3.80 -192.19 -0.73 -7.20 16 24 C 0.06 0.85 11.09 83.37 0.92 1.77 16 25 C -0.25 -2.52 10.80 22.01 0.24 -2.28 16 26 C 0.07 0.77 12.02 85.28 1.02 1.79 16 27 N -0.32 -5.52 11.81 -56.95 -0.67 -6.19 16 28 N -0.52 -10.38 9.83 -191.84 -1.88 -12.26 16 29 C 0.19 3.59 10.81 85.04 0.92 4.51 16 30 H 0.07 0.71 6.87 -2.39 -0.02 0.69 16 31 H 0.08 0.67 5.96 -2.39 -0.01 0.66 16 32 H 0.10 0.61 7.83 -2.39 -0.02 0.59 16 33 H 0.08 2.00 7.49 -2.39 -0.02 1.98 16 34 H 0.12 1.62 7.86 -2.39 -0.02 1.60 16 35 H 0.39 6.90 9.05 -74.05 -0.67 6.23 16 36 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.37 17.45 5.41 -92.71 -0.50 16.95 16 39 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 40 H 0.18 1.84 5.54 -2.91 -0.02 1.82 16 41 H 0.16 2.30 7.67 -2.91 -0.02 2.28 16 42 H 0.19 2.20 8.05 -2.91 -0.02 2.18 16 43 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.23 0.52 8.06 -2.91 -0.02 0.50 16 45 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -84.34 382.92 1.08 -83.25 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.18 Total: 25.06 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 8.53 Total: 17.73 kcal Atomic # 7 Polarization: -133.28 SS G_CDS: -7.22 Total: -140.50 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.95 Total: -34.99 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.90 Total: 49.43 kcal Total: -84.34 1.08 -83.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486292947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.291 kcal (2) G-P(sol) polarization free energy of solvation -84.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds