Wall clock time and date at job start Wed Apr 1 2020 03:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46973 * 2 1 4 4 C 1.35529 * 125.68207 * 265.51459 * 3 2 1 5 5 C 1.35444 * 108.87481 * 179.97438 * 4 3 2 6 6 C 1.39844 * 107.86386 * 359.74244 * 5 4 3 7 7 C 1.37651 * 125.67431 * 85.49103 * 3 2 1 8 8 C 1.46676 * 126.23240 * 0.02562 * 7 3 2 9 9 O 1.21690 * 120.00396 * 355.02747 * 8 7 3 10 10 N 1.34783 * 119.99813 * 175.30639 * 8 7 3 11 11 C 1.46500 * 119.99874 * 184.94439 * 10 8 7 12 12 C 1.50699 * 109.47287 * 179.97438 * 11 10 8 13 13 N 1.31795 * 119.09236 * 89.99956 * 12 11 10 14 14 C 1.32788 * 120.71842 * 180.02562 * 13 12 11 15 15 O 1.35522 * 120.51280 * 179.97438 * 14 13 12 16 16 C 1.39422 * 118.97831 * 359.97438 * 14 13 12 17 17 C 1.38196 * 118.34598 * 0.02562 * 16 14 13 18 18 C 1.50698 * 120.40852 * 179.97438 * 17 16 14 19 19 N 1.46499 * 109.46863 * 95.00270 * 18 17 16 20 20 C 1.36939 * 120.00106 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99799 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00018 * 179.97438 * 20 19 18 23 23 N 1.31612 * 119.99900 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99868 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46874 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47234 * 120.00005 * 24 22 20 27 27 H 1.48500 * 109.46620 * 240.00040 * 24 22 20 28 28 N 1.31760 * 119.09689 * 269.73805 * 12 11 10 29 29 H 1.09005 * 109.46761 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47035 * 299.99468 * 1 2 3 31 31 H 1.08994 * 109.47188 * 59.99976 * 1 2 3 32 32 H 1.09005 * 109.47035 * 240.00532 * 2 1 3 33 33 H 1.08999 * 109.47606 * 120.00234 * 2 1 3 34 34 H 1.08006 * 125.56110 * 359.95417 * 4 3 2 35 35 H 1.08000 * 126.07232 * 180.02562 * 5 4 3 36 36 H 1.07998 * 126.45594 * 180.26807 * 6 5 4 37 37 H 0.96998 * 120.00265 * 4.94387 * 10 8 7 38 38 H 1.08995 * 109.47693 * 300.00240 * 11 10 8 39 39 H 1.09006 * 109.46924 * 60.00265 * 11 10 8 40 40 H 0.96706 * 113.99357 * 90.00096 * 15 14 13 41 41 H 1.07997 * 120.82708 * 180.02562 * 16 14 13 42 42 H 1.08993 * 109.47256 * 214.99967 * 18 17 16 43 43 H 1.08999 * 109.47713 * 335.00455 * 18 17 16 44 44 H 0.97001 * 119.99878 * 359.97438 * 19 18 17 45 45 H 0.97003 * 119.99766 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3630 2.0979 -1.0975 5 6 2.7657 3.3307 -0.7071 6 6 2.6652 3.3936 0.6863 7 6 2.2030 2.1674 1.1147 8 6 1.9483 1.7743 2.5047 9 8 1.4486 0.6920 2.7492 10 7 2.2626 2.6142 3.5109 11 6 2.1097 2.1804 4.9019 12 6 2.5260 3.2966 5.8248 13 7 1.6225 4.1697 6.2227 14 6 1.9540 5.1662 7.0355 15 8 1.0217 6.0620 7.4416 16 6 3.2760 5.2766 7.4645 17 6 4.1898 4.3390 7.0224 18 6 5.6309 4.4145 7.4566 19 7 5.8362 3.5485 8.6203 20 6 7.0764 3.4542 9.1933 21 1 7.9030 4.0185 8.7876 22 6 7.2708 2.6340 10.2963 23 7 6.2630 1.9474 10.7915 24 14 8.9623 2.5059 11.0784 25 1 9.9162 3.3712 10.3391 26 1 8.8878 2.9473 12.4942 27 1 9.4278 1.0968 11.0230 28 7 3.7821 3.3697 6.2159 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.3233 1.7436 -2.1170 35 1 3.1003 4.1258 -1.3569 36 1 2.9068 4.2419 1.3095 37 1 2.5901 3.5057 3.3142 38 1 1.0674 1.9229 5.0897 39 1 2.7376 1.3077 5.0814 40 1 0.5670 5.8134 8.2581 41 1 3.5783 6.0750 8.1259 42 1 6.2740 4.0851 6.6406 43 1 5.8774 5.4428 7.7211 44 1 5.0937 3.0419 8.9849 45 1 6.3990 1.3740 11.5620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489082902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:14 Heat of formation + Delta-G solvation = 40.845780 kcal Electronic energy + Delta-G solvation = -28815.289175 eV Core-core repulsion = 24641.984736 eV Total energy + Delta-G solvation = -4173.304439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64990 -41.23208 -39.16155 -37.77492 -35.73419 -34.90652 -34.16577 -33.13442 -31.89540 -30.74295 -29.78693 -29.56243 -27.28037 -26.57937 -23.89117 -23.53012 -23.22450 -22.34202 -21.52031 -20.73025 -19.81143 -18.84857 -18.17787 -17.75017 -17.27305 -16.37711 -16.16682 -15.70348 -15.59555 -15.26112 -14.93330 -14.78338 -14.60954 -14.22301 -14.12920 -13.91315 -13.77670 -13.35037 -13.03886 -12.89874 -12.74005 -12.66556 -12.55187 -12.46180 -12.20365 -12.12957 -11.91100 -11.47697 -11.07415 -10.89319 -10.66287 -10.40381 -10.23117 -10.12725 -9.84183 -9.44408 -9.31881 -9.21263 -9.00867 -8.98618 -8.43383 -7.07753 -5.85757 -3.17197 0.73839 0.98891 1.27862 2.39080 2.52459 3.08574 3.17230 3.24291 3.39208 3.44811 3.47236 3.77899 3.85881 4.32479 4.42922 4.55168 4.55898 4.72227 4.76636 4.88601 4.99518 5.09779 5.11252 5.14665 5.28232 5.32921 5.39500 5.46676 5.51555 5.57822 5.71363 5.82082 5.83354 5.94350 5.96219 6.11838 6.18518 6.33855 6.44700 6.51940 6.76162 6.97993 7.00473 7.26978 7.29011 7.61171 7.99849 8.08417 8.29921 9.42386 9.92984 10.28476 11.36670 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.002259 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.598760 B =12391.503288 C =13468.603505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.406 5.406 4 C 0.015 3.985 5 C -0.208 4.208 6 C -0.140 4.140 7 C -0.049 4.049 8 C 0.594 3.406 9 O -0.545 6.545 10 N -0.708 5.708 11 C 0.200 3.800 12 C 0.315 3.685 13 N -0.532 5.532 14 C 0.354 3.646 15 O -0.477 6.477 16 C -0.216 4.216 17 C 0.200 3.800 18 C 0.196 3.804 19 N -0.722 5.722 20 C -0.244 4.244 21 H 0.075 0.925 22 C -0.010 4.010 23 N -0.930 5.930 24 Si 0.912 3.088 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 N -0.490 5.490 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.167 0.833 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.404 0.596 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.408 0.592 41 H 0.157 0.843 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.545 3.127 -21.249 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.080 5.080 4 C -0.121 4.121 5 C -0.232 4.232 6 C -0.166 4.166 7 C -0.162 4.162 8 C 0.382 3.618 9 O -0.425 6.425 10 N -0.360 5.360 11 C 0.075 3.925 12 C 0.046 3.954 13 N -0.258 5.258 14 C 0.167 3.833 15 O -0.285 6.285 16 C -0.240 4.240 17 C 0.055 3.945 18 C 0.068 3.932 19 N -0.367 5.367 20 C -0.375 4.375 21 H 0.093 0.907 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.742 3.258 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.217 1.217 28 N -0.206 5.206 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.185 0.815 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.239 0.761 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.267 0.733 41 H 0.174 0.826 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.968 1.620 -22.010 25.597 hybrid contribution 0.781 0.771 1.538 1.890 sum -12.187 2.391 -20.472 23.944 Atomic orbital electron populations 1.22067 0.93934 1.03084 1.02925 1.22044 0.96095 0.79481 1.04855 1.44070 1.47043 1.11759 1.05083 1.22007 1.05413 0.93040 0.91613 1.20815 1.09739 0.97522 0.95090 1.21367 1.03748 0.95842 0.95680 1.19942 1.15359 0.93296 0.87638 1.16875 0.77746 0.83892 0.83316 1.90802 1.44177 1.22542 1.84935 1.45401 1.67849 1.17868 1.04918 1.19873 1.03108 0.92484 0.77053 1.22664 0.84787 0.93184 0.94770 1.67671 1.39828 1.04009 1.14258 1.19367 0.87509 0.86119 0.90350 1.84698 1.54254 1.42238 1.47279 1.22982 0.93976 1.03383 1.03693 1.22197 0.98140 0.86667 0.87492 1.19722 0.85464 0.96055 0.91920 1.42179 1.10570 1.52709 1.31283 1.19247 0.87244 1.22280 1.08687 0.90669 1.24784 0.97733 0.99404 0.98736 1.69679 1.29902 1.32134 1.26094 0.86056 0.83315 0.77459 0.78953 1.20380 1.21774 1.21723 1.68185 1.16926 1.23224 1.12303 0.90715 0.91233 0.92492 0.89411 0.87672 0.81541 0.84036 0.84047 0.76131 0.88466 0.88046 0.73307 0.82576 0.93386 0.93764 0.78102 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 10.18 37.16 0.38 -0.91 16 2 C 0.10 0.81 6.10 -4.04 -0.02 0.79 16 3 N -0.41 -4.11 2.76 -112.87 -0.31 -4.42 16 4 C 0.01 0.12 11.37 -16.92 -0.19 -0.07 16 5 C -0.21 -1.86 10.81 -39.98 -0.43 -2.29 16 6 C -0.14 -1.44 10.36 -39.12 -0.41 -1.84 16 7 C -0.05 -0.57 6.88 -81.98 -0.56 -1.14 16 8 C 0.59 7.82 7.77 -12.85 -0.10 7.72 16 9 O -0.55 -8.29 14.32 5.20 0.07 -8.21 16 10 N -0.71 -8.69 5.53 -62.80 -0.35 -9.04 16 11 C 0.20 2.68 6.11 -5.19 -0.03 2.65 16 12 C 0.32 4.78 7.01 -157.22 -1.10 3.68 16 13 N -0.53 -7.93 10.36 -10.78 -0.11 -8.04 16 14 C 0.35 4.97 7.83 -16.70 -0.13 4.83 16 15 O -0.48 -5.43 13.58 -18.26 -0.25 -5.68 16 16 C -0.22 -3.17 9.79 -39.16 -0.38 -3.56 16 17 C 0.20 3.43 6.18 -82.31 -0.51 2.92 16 18 C 0.20 3.80 6.61 -5.20 -0.03 3.76 16 19 N -0.72 -17.82 5.59 -61.09 -0.34 -18.16 16 20 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 21 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 24 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 N -0.49 -8.43 10.27 -7.05 -0.07 -8.50 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.11 1.08 6.70 -51.93 -0.35 0.73 16 34 H 0.17 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.14 1.22 7.45 -52.49 -0.39 0.83 16 37 H 0.40 4.45 7.36 -40.82 -0.30 4.15 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.41 2.67 9.06 45.56 0.41 3.09 16 41 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 44 H 0.39 10.25 7.66 -40.82 -0.31 9.94 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -34.48 391.95 -8.64 -43.12 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -5.11 Total: 13.74 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -3.78 Total: 9.41 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -0.46 Total: -75.19 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.17 Total: -13.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.48 -8.64 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489082902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.962 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds