Wall clock time and date at job start Wed Apr 1 2020 03:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46973 * 2 1 4 4 C 1.35529 * 125.68207 * 265.51459 * 3 2 1 5 5 C 1.35444 * 108.87481 * 179.97438 * 4 3 2 6 6 C 1.39844 * 107.86386 * 359.74244 * 5 4 3 7 7 C 1.37651 * 125.67431 * 85.49103 * 3 2 1 8 8 C 1.46676 * 126.23240 * 0.02562 * 7 3 2 9 9 O 1.21690 * 120.00396 * 355.02747 * 8 7 3 10 10 N 1.34783 * 119.99813 * 175.30639 * 8 7 3 11 11 C 1.46500 * 119.99874 * 184.94439 * 10 8 7 12 12 C 1.50699 * 109.47287 * 179.97438 * 11 10 8 13 13 N 1.31795 * 119.09236 * 89.99956 * 12 11 10 14 14 C 1.32788 * 120.71842 * 180.02562 * 13 12 11 15 15 O 1.35522 * 120.51280 * 179.97438 * 14 13 12 16 16 C 1.39422 * 118.97831 * 359.97438 * 14 13 12 17 17 C 1.38196 * 118.34598 * 0.02562 * 16 14 13 18 18 C 1.50698 * 120.40852 * 179.97438 * 17 16 14 19 19 N 1.46499 * 109.46863 * 95.00270 * 18 17 16 20 20 C 1.36939 * 120.00106 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99799 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00018 * 179.97438 * 20 19 18 23 23 N 1.31612 * 119.99900 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99868 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46874 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47234 * 120.00005 * 24 22 20 27 27 H 1.48500 * 109.46620 * 240.00040 * 24 22 20 28 28 N 1.31760 * 119.09689 * 269.73805 * 12 11 10 29 29 H 1.09005 * 109.46761 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47035 * 299.99468 * 1 2 3 31 31 H 1.08994 * 109.47188 * 59.99976 * 1 2 3 32 32 H 1.09005 * 109.47035 * 240.00532 * 2 1 3 33 33 H 1.08999 * 109.47606 * 120.00234 * 2 1 3 34 34 H 1.08006 * 125.56110 * 359.95417 * 4 3 2 35 35 H 1.08000 * 126.07232 * 180.02562 * 5 4 3 36 36 H 1.07998 * 126.45594 * 180.26807 * 6 5 4 37 37 H 0.96998 * 120.00265 * 4.94387 * 10 8 7 38 38 H 1.08995 * 109.47693 * 300.00240 * 11 10 8 39 39 H 1.09006 * 109.46924 * 60.00265 * 11 10 8 40 40 H 0.96706 * 113.99357 * 90.00096 * 15 14 13 41 41 H 1.07997 * 120.82708 * 180.02562 * 16 14 13 42 42 H 1.08993 * 109.47256 * 214.99967 * 18 17 16 43 43 H 1.08999 * 109.47713 * 335.00455 * 18 17 16 44 44 H 0.97001 * 119.99878 * 359.97438 * 19 18 17 45 45 H 0.97003 * 119.99766 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3630 2.0979 -1.0975 5 6 2.7657 3.3307 -0.7071 6 6 2.6652 3.3936 0.6863 7 6 2.2030 2.1674 1.1147 8 6 1.9483 1.7743 2.5047 9 8 1.4486 0.6920 2.7492 10 7 2.2626 2.6142 3.5109 11 6 2.1097 2.1804 4.9019 12 6 2.5260 3.2966 5.8248 13 7 1.6225 4.1697 6.2227 14 6 1.9540 5.1662 7.0355 15 8 1.0217 6.0620 7.4416 16 6 3.2760 5.2766 7.4645 17 6 4.1898 4.3390 7.0224 18 6 5.6309 4.4145 7.4566 19 7 5.8362 3.5485 8.6203 20 6 7.0764 3.4542 9.1933 21 1 7.9030 4.0185 8.7876 22 6 7.2708 2.6340 10.2963 23 7 6.2630 1.9474 10.7915 24 14 8.9623 2.5059 11.0784 25 1 9.9162 3.3712 10.3391 26 1 8.8878 2.9473 12.4942 27 1 9.4278 1.0968 11.0230 28 7 3.7821 3.3697 6.2159 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.3233 1.7436 -2.1170 35 1 3.1003 4.1258 -1.3569 36 1 2.9068 4.2419 1.3095 37 1 2.5901 3.5057 3.3142 38 1 1.0674 1.9229 5.0897 39 1 2.7376 1.3077 5.0814 40 1 0.5670 5.8134 8.2581 41 1 3.5783 6.0750 8.1259 42 1 6.2740 4.0851 6.6406 43 1 5.8774 5.4428 7.7211 44 1 5.0937 3.0419 8.9849 45 1 6.3990 1.3740 11.5620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489082902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:13 Heat of formation + Delta-G solvation = 13.171542 kcal Electronic energy + Delta-G solvation = -28816.489220 eV Core-core repulsion = 24641.984736 eV Total energy + Delta-G solvation = -4174.504484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52204 -42.30759 -40.15250 -38.80769 -37.18342 -36.11621 -35.02650 -34.59216 -33.18167 -32.43281 -30.70561 -30.24021 -28.39385 -28.16326 -25.25232 -24.62596 -24.31205 -23.44689 -22.82270 -21.45936 -20.73237 -19.91442 -19.43930 -18.97469 -18.73415 -17.48055 -17.09794 -16.81306 -16.64894 -16.57690 -16.28498 -15.79897 -15.55845 -15.48450 -15.33454 -15.00682 -14.91819 -14.59440 -14.38862 -14.14194 -13.99735 -13.57471 -13.46380 -13.21861 -13.17952 -13.10532 -12.96520 -12.84831 -12.80470 -12.13742 -12.08011 -11.97388 -11.81397 -11.53086 -11.25469 -11.03336 -10.63312 -10.44140 -10.36957 -9.70569 -9.18095 -9.08899 -7.97629 -5.28870 -0.43311 -0.22625 0.44015 1.49344 1.50534 1.57787 1.60616 1.82295 2.08170 2.18415 2.33007 2.52177 2.63071 2.73071 3.11123 3.37831 3.64629 3.79457 3.82274 3.88092 4.08887 4.11616 4.12590 4.16742 4.20519 4.38345 4.43013 4.43586 4.46254 4.53566 4.77580 4.79525 4.86798 4.88672 5.07252 5.10539 5.16262 5.19800 5.27578 5.49104 5.78289 5.81346 6.00778 6.21465 6.31062 6.36766 6.45122 6.87209 7.01609 7.29073 7.95929 8.21133 9.26020 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.002259 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.598760 B =12391.503288 C =13468.603505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.093 3.907 3 N -0.413 5.413 4 C 0.028 3.972 5 C -0.221 4.221 6 C -0.140 4.140 7 C -0.086 4.086 8 C 0.590 3.410 9 O -0.574 6.574 10 N -0.702 5.702 11 C 0.206 3.794 12 C 0.317 3.683 13 N -0.536 5.536 14 C 0.364 3.636 15 O -0.473 6.473 16 C -0.209 4.209 17 C 0.183 3.817 18 C 0.198 3.802 19 N -0.735 5.735 20 C -0.243 4.243 21 H 0.086 0.914 22 C -0.074 4.074 23 N -0.971 5.971 24 Si 0.977 3.023 25 H -0.261 1.261 26 H -0.292 1.292 27 H -0.297 1.297 28 N -0.514 5.514 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.205 0.795 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.410 0.590 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.430 0.570 41 H 0.176 0.824 42 H 0.043 0.957 43 H 0.067 0.933 44 H 0.372 0.628 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.463 4.539 -23.141 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.027 4.027 3 N -0.087 5.087 4 C -0.108 4.108 5 C -0.244 4.244 6 C -0.167 4.167 7 C -0.199 4.199 8 C 0.380 3.620 9 O -0.456 6.456 10 N -0.355 5.355 11 C 0.081 3.919 12 C 0.048 3.952 13 N -0.262 5.262 14 C 0.176 3.824 15 O -0.284 6.284 16 C -0.233 4.233 17 C 0.039 3.961 18 C 0.072 3.928 19 N -0.378 5.378 20 C -0.374 4.374 21 H 0.104 0.896 22 C -0.267 4.267 23 N -0.621 5.621 24 Si 0.806 3.194 25 H -0.185 1.185 26 H -0.219 1.219 27 H -0.224 1.224 28 N -0.231 5.231 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.099 0.901 34 H 0.221 0.779 35 H 0.181 0.819 36 H 0.168 0.832 37 H 0.246 0.754 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.294 0.706 41 H 0.194 0.806 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.203 0.797 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.883 3.089 -23.915 27.339 hybrid contribution 0.662 0.424 2.005 2.153 sum -12.221 3.513 -21.910 25.333 Atomic orbital electron populations 1.22005 0.93665 1.03741 1.01877 1.22142 0.96308 0.79002 1.05265 1.44294 1.47029 1.12237 1.05092 1.22688 1.02955 0.92551 0.92572 1.21172 1.10006 0.98587 0.94643 1.21655 1.02731 0.95523 0.96802 1.19873 1.18122 0.94599 0.87326 1.17189 0.77149 0.83470 0.84165 1.90776 1.45654 1.23705 1.85451 1.45307 1.67741 1.18098 1.04308 1.19743 1.02873 0.91697 0.77589 1.22767 0.84259 0.93462 0.94686 1.67753 1.39596 1.04297 1.14579 1.19434 0.87857 0.85635 0.89475 1.84665 1.53722 1.41361 1.48695 1.23088 0.93768 1.03136 1.03323 1.21908 0.97538 0.87919 0.88727 1.19774 0.87244 0.95897 0.89929 1.42336 1.09448 1.53336 1.32721 1.19687 0.88365 1.21185 1.08173 0.89617 1.25622 1.01258 0.99892 0.99888 1.69837 1.31992 1.33496 1.26771 0.85018 0.79458 0.77054 0.77867 1.18535 1.21923 1.22426 1.68109 1.18048 1.23820 1.13155 0.89263 0.94401 0.91207 0.86059 0.90140 0.77862 0.81891 0.83165 0.75428 0.88195 0.89186 0.70615 0.80645 0.93871 0.91515 0.79669 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 10.18 71.98 0.73 -1.63 16 2 C 0.09 1.50 6.10 86.38 0.53 2.03 16 3 N -0.41 -7.92 2.76 -511.02 -1.41 -9.33 16 4 C 0.03 0.40 11.37 83.48 0.95 1.35 16 5 C -0.22 -3.47 10.81 22.01 0.24 -3.23 16 6 C -0.14 -2.76 10.36 22.57 0.23 -2.53 16 7 C -0.09 -2.03 6.88 40.35 0.28 -1.76 16 8 C 0.59 16.22 7.77 86.45 0.67 16.89 16 9 O -0.57 -18.47 14.32 -4.32 -0.06 -18.53 16 10 N -0.70 -17.83 5.53 -470.81 -2.61 -20.43 16 11 C 0.21 5.76 6.11 85.63 0.52 6.28 16 12 C 0.32 9.70 7.01 138.76 0.97 10.67 16 13 N -0.54 -15.57 10.36 -300.69 -3.12 -18.69 16 14 C 0.36 9.62 7.83 84.83 0.66 10.28 16 15 O -0.47 -9.59 13.58 -88.25 -1.20 -10.79 16 16 C -0.21 -5.84 9.79 22.55 0.22 -5.62 16 17 C 0.18 6.21 6.18 42.44 0.26 6.48 16 18 C 0.20 7.58 6.61 85.63 0.57 8.15 16 19 N -0.74 -36.46 5.59 -347.19 -1.94 -38.40 16 20 C -0.24 -13.12 9.99 84.03 0.84 -12.28 16 21 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 22 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 23 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 24 Si 0.98 45.25 29.55 68.60 2.03 47.27 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 28 N -0.51 -17.88 10.27 -176.23 -1.81 -19.69 16 29 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.04 0.82 7.66 -2.38 -0.02 0.80 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.12 1.09 8.13 -2.38 -0.02 1.07 16 33 H 0.08 1.71 6.70 -2.39 -0.02 1.70 16 34 H 0.20 1.20 8.06 -2.91 -0.02 1.17 16 35 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.15 2.50 7.45 -2.91 -0.02 2.48 16 37 H 0.41 9.22 7.36 -92.71 -0.68 8.53 16 38 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 40 H 0.43 4.46 9.06 -74.05 -0.67 3.79 16 41 H 0.18 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 2.28 8.06 -2.39 -0.02 2.26 16 44 H 0.37 20.19 7.66 -92.71 -0.71 19.48 16 45 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -75.35 391.95 -2.69 -78.03 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -1.00 Total: 37.94 kcal Atomic # 6 Polarization: 23.20 SS G_CDS: 8.15 Total: 31.34 kcal Atomic # 7 Polarization: -154.67 SS G_CDS: -10.60 Total: -165.27 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.26 Total: -29.32 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.35 -2.69 -78.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489082902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.203 kcal (2) G-P(sol) polarization free energy of solvation -75.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds