Wall clock time and date at job start Wed Apr 1 2020 04:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99868 * 2 1 4 4 H 1.08002 * 120.00157 * 320.22279 * 3 2 1 5 5 C 1.38811 * 119.99555 * 140.22916 * 3 2 1 6 6 N 1.31621 * 119.99964 * 160.64586 * 5 3 2 7 7 Si 1.86800 * 120.00192 * 340.64207 * 5 3 2 8 8 H 1.48496 * 109.47062 * 95.26904 * 7 5 3 9 9 H 1.48508 * 109.47121 * 215.26684 * 7 5 3 10 10 H 1.48497 * 109.47117 * 335.26228 * 7 5 3 11 11 C 1.46504 * 119.99546 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47003 * 90.00325 * 11 2 1 13 13 H 1.09000 * 110.88778 * 302.56613 * 12 11 2 14 14 C 1.55165 * 111.03544 * 178.66838 * 12 11 2 15 15 C 1.54324 * 102.94026 * 206.40819 * 14 12 11 16 16 N 1.47186 * 107.29696 * 22.27775 * 15 14 12 17 17 C 1.34774 * 125.73657 * 181.03326 * 16 15 14 18 18 O 1.21577 * 120.00178 * 174.29731 * 17 16 15 19 19 C 1.47679 * 119.99942 * 354.29105 * 17 16 15 20 20 C 1.39919 * 120.38899 * 185.30347 * 19 17 16 21 21 N 1.31452 * 121.13503 * 179.71758 * 20 19 17 22 22 C 1.32465 * 121.81199 * 0.54810 * 21 20 19 23 23 N 1.37874 * 133.45003 * 179.74115 * 22 21 20 24 24 H 0.96997 * 126.25100 * 0.02562 * 23 22 21 25 25 C 1.36521 * 107.50052 * 179.97438 * 23 22 21 26 26 O 1.35262 * 125.02504 * 179.97438 * 25 23 22 27 27 N 1.30714 * 109.95269 * 0.02562 * 25 23 22 28 28 C 1.35899 * 109.40171 * 359.97438 * 27 25 23 29 29 C 1.39410 * 133.63393 * 180.02562 * 28 27 25 30 30 C 1.47419 * 108.61400 * 0.91381 * 16 15 14 31 31 H 1.08997 * 109.47113 * 275.01728 * 1 2 3 32 32 H 1.08999 * 109.47186 * 35.01884 * 1 2 3 33 33 H 1.09005 * 109.47375 * 155.02209 * 1 2 3 34 34 H 0.97002 * 120.00173 * 179.97438 * 6 5 3 35 35 H 1.08997 * 109.47131 * 329.99662 * 11 2 1 36 36 H 1.09000 * 109.46567 * 209.99771 * 11 2 1 37 37 H 1.08994 * 110.71595 * 324.76340 * 14 12 11 38 38 H 1.08998 * 110.72046 * 87.86328 * 14 12 11 39 39 H 1.08998 * 109.88529 * 141.61187 * 15 14 12 40 40 H 1.09006 * 109.87823 * 262.62005 * 15 14 12 41 41 H 1.07998 * 119.43168 * 359.97438 * 20 19 17 42 42 H 0.96701 * 114.00009 * 270.03403 * 26 25 23 43 43 H 1.08000 * 120.97061 * 359.97438 * 29 28 27 44 44 H 1.09001 * 110.36901 * 217.11390 * 30 16 15 45 45 H 1.09001 * 110.36727 * 94.89723 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7971 2.0130 -0.5984 5 6 3.2969 1.3249 0.7691 6 7 4.1578 2.2832 0.4994 7 14 3.6187 0.1520 2.1868 8 1 4.4963 -0.9534 1.7252 9 1 4.2856 0.8842 3.2935 10 1 2.3303 -0.4071 2.6690 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5156 -1.8032 -1.9924 14 6 3.2568 -3.0359 -1.4863 15 6 3.9799 -2.9575 -2.8474 16 7 4.0460 -1.5368 -3.2266 17 6 4.5855 -1.0493 -4.3613 18 8 4.4923 0.1353 -4.6187 19 6 5.2899 -1.9539 -5.2921 20 6 5.9478 -1.4412 -6.4155 21 7 6.5840 -2.2324 -7.2506 22 6 6.6236 -3.5449 -7.0761 23 7 7.1996 -4.5785 -7.7837 24 1 7.7169 -4.4964 -8.6001 25 6 6.9099 -5.7386 -7.1248 26 8 7.3041 -6.9723 -7.5150 27 7 6.1943 -5.4810 -6.0617 28 6 5.9823 -4.1415 -5.9738 29 6 5.3024 -3.3328 -5.0643 30 6 3.4208 -0.7353 -2.1590 31 1 -0.3633 0.0899 1.0237 32 1 -0.3633 0.8416 -0.5897 33 1 -0.3634 -0.9316 -0.4340 34 1 4.9593 2.3806 1.0370 35 1 1.6083 -2.0286 0.5130 36 1 3.1499 -1.1387 0.5133 37 1 3.9769 -3.0769 -0.6691 38 1 2.5866 -3.8948 -1.4514 39 1 4.9877 -3.3625 -2.7558 40 1 3.4216 -3.5190 -3.5966 41 1 5.9363 -0.3767 -6.5974 42 1 6.6796 -7.4165 -8.1048 43 1 4.8001 -3.7593 -4.2087 44 1 2.8690 0.1018 -2.5867 45 1 4.1780 -0.3737 -1.4632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494142623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:43 Heat of formation + Delta-G solvation = 78.098170 kcal Electronic energy + Delta-G solvation = -30202.551598 eV Core-core repulsion = 26030.862544 eV Total energy + Delta-G solvation = -4171.689054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.78866 -40.27978 -38.89977 -37.69780 -37.03047 -35.63209 -34.20303 -32.45164 -31.62503 -30.96602 -29.68169 -29.05926 -26.38850 -25.88665 -24.75234 -23.77911 -22.75213 -22.28257 -21.12505 -20.16741 -19.72859 -19.67501 -18.77248 -17.51639 -16.91731 -16.87077 -16.24638 -16.20747 -15.73648 -15.26369 -15.13168 -14.92187 -14.36125 -14.09663 -13.76181 -13.46117 -13.42394 -13.16530 -12.90998 -12.69228 -12.55775 -12.49017 -12.24564 -11.94923 -11.73263 -11.59429 -11.42165 -11.32269 -10.98652 -10.84221 -10.62675 -10.31486 -10.26618 -9.99446 -9.76500 -9.54014 -9.41605 -9.26012 -8.85416 -8.53202 -8.31689 -6.78097 -5.96727 -3.43153 0.30639 0.55000 1.64468 2.13093 2.87513 3.01337 3.20760 3.26958 3.45536 3.49795 3.66700 3.86155 4.24277 4.38921 4.50369 4.56890 4.59300 4.75190 4.88312 4.94764 5.05845 5.25555 5.35073 5.36705 5.45299 5.57719 5.65004 5.71910 5.87761 5.94923 6.02139 6.10782 6.16910 6.17979 6.26382 6.38410 6.47204 6.56753 6.70147 6.73204 6.84117 6.93549 6.94884 7.11521 7.45756 7.75373 8.07687 8.33568 8.41398 8.99216 9.71012 10.12300 11.18026 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.002667 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.086965 B =10495.989911 C =10979.026170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.613 5.613 3 C -0.268 4.268 4 H 0.079 0.921 5 C 0.038 3.962 6 N -0.896 5.896 7 Si 0.877 3.123 8 H -0.286 1.286 9 H -0.302 1.302 10 H -0.270 1.270 11 C 0.148 3.852 12 C -0.113 4.113 13 H 0.077 0.923 14 C -0.134 4.134 15 C 0.088 3.912 16 N -0.611 5.611 17 C 0.577 3.423 18 O -0.525 6.525 19 C -0.181 4.181 20 C 0.201 3.799 21 N -0.485 5.485 22 C 0.265 3.735 23 N -0.588 5.588 24 H 0.429 0.571 25 C 0.462 3.538 26 O -0.437 6.437 27 N -0.468 5.468 28 C 0.003 3.997 29 C -0.019 4.019 30 C 0.130 3.870 31 H 0.008 0.992 32 H 0.039 0.961 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.185 0.815 42 H 0.413 0.587 43 H 0.182 0.818 44 H 0.089 0.911 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 -19.344 -15.656 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.337 5.337 3 C -0.396 4.396 4 H 0.096 0.904 5 C -0.163 4.163 6 N -0.537 5.537 7 Si 0.707 3.293 8 H -0.214 1.214 9 H -0.230 1.230 10 H -0.194 1.194 11 C 0.021 3.979 12 C -0.135 4.135 13 H 0.095 0.905 14 C -0.172 4.172 15 C -0.035 4.035 16 N -0.344 5.344 17 C 0.364 3.636 18 O -0.402 6.402 19 C -0.188 4.188 20 C 0.033 3.967 21 N -0.198 5.198 22 C 0.028 3.972 23 N -0.215 5.215 24 H 0.269 0.731 25 C 0.157 3.843 26 O -0.238 6.238 27 N -0.199 5.199 28 C -0.116 4.116 29 C -0.045 4.045 30 C 0.010 3.990 31 H 0.026 0.974 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.202 0.798 42 H 0.272 0.728 43 H 0.198 0.802 44 H 0.108 0.892 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.817 -18.883 -15.599 24.789 hybrid contribution 0.347 -0.778 0.089 0.857 sum 4.164 -19.661 -15.510 25.386 Atomic orbital electron populations 1.21073 0.84559 0.98542 0.97803 1.44053 1.00810 1.01924 1.86911 1.18751 1.07341 0.91057 1.22485 0.90363 1.25516 0.97210 0.96270 0.97348 1.69852 1.10438 1.33952 1.39429 0.86943 0.77925 0.80396 0.84014 1.21360 1.23011 1.19449 1.21149 0.96624 0.88083 0.92037 1.23059 0.97488 0.92697 1.00296 0.90496 1.22777 0.99562 0.99166 0.95738 1.22519 1.00298 0.83242 0.97455 1.48637 1.57941 1.08242 1.19590 1.17373 0.79066 0.87084 0.80068 1.90844 1.59369 1.15819 1.74217 1.20834 1.04886 0.93531 0.99599 1.22863 0.87738 0.99604 0.86532 1.66535 1.20987 1.01015 1.31230 1.18828 0.96823 0.88652 0.92856 1.43006 1.47512 1.05362 1.25666 0.73103 1.20153 0.94357 0.80844 0.88979 1.84864 1.48171 1.21901 1.68895 1.70715 1.17354 1.14120 1.17718 1.19376 1.04349 0.90161 0.97734 1.22469 0.93044 0.91367 0.97631 1.22319 0.95662 0.93818 0.87209 0.97363 0.94263 0.95151 0.92697 0.93662 0.92687 0.90406 0.90074 0.90771 0.90742 0.79827 0.72752 0.80163 0.89221 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.41 10.69 59.85 0.64 3.05 16 2 N -0.61 -13.86 2.40 -181.12 -0.43 -14.29 16 3 C -0.27 -7.19 9.00 -15.06 -0.14 -7.32 16 4 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 5 C 0.04 1.05 5.34 -17.43 -0.09 0.95 16 6 N -0.90 -26.85 13.97 55.49 0.78 -26.07 16 7 Si 0.88 21.56 24.94 -169.99 -4.24 17.32 16 8 H -0.29 -6.69 6.71 56.52 0.38 -6.31 16 9 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 C 0.15 2.90 3.99 -4.04 -0.02 2.89 16 12 C -0.11 -1.90 3.29 -88.47 -0.29 -2.19 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.13 -1.71 6.42 -24.89 -0.16 -1.87 16 15 C 0.09 1.08 4.87 -2.97 -0.01 1.06 16 16 N -0.61 -10.06 3.33 -173.25 -0.58 -10.64 16 17 C 0.58 9.88 7.81 -12.41 -0.10 9.78 16 18 O -0.53 -10.96 16.59 5.30 0.09 -10.87 16 19 C -0.18 -2.50 5.89 -104.84 -0.62 -3.12 16 20 C 0.20 2.62 10.74 -17.09 -0.18 2.44 16 21 N -0.49 -6.13 10.36 -11.91 -0.12 -6.26 16 22 C 0.26 3.11 8.45 -155.42 -1.31 1.80 16 23 N -0.59 -4.86 6.23 -13.36 -0.08 -4.94 16 24 H 0.43 2.17 8.96 -40.82 -0.37 1.80 16 25 C 0.46 4.02 9.39 -88.83 -0.83 3.19 16 26 O -0.44 -2.33 13.63 -17.48 -0.24 -2.57 16 27 N -0.47 -5.45 11.32 -12.21 -0.14 -5.59 16 28 C 0.00 0.04 7.22 -84.66 -0.61 -0.57 16 29 C -0.02 -0.23 8.75 -38.58 -0.34 -0.56 16 30 C 0.13 2.57 5.38 -2.53 -0.01 2.55 16 31 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.03 0.49 8.03 -51.93 -0.42 0.07 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.06 1.20 3.29 -51.93 -0.17 1.03 16 37 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.81 6.65 -51.93 -0.35 0.47 16 40 H 0.07 0.76 6.83 -51.93 -0.35 0.40 16 41 H 0.18 2.23 7.64 -52.49 -0.40 1.83 16 42 H 0.41 -0.14 9.06 45.56 0.41 0.27 16 43 H 0.18 1.94 2.87 -54.69 -0.16 1.78 16 44 H 0.09 2.04 7.98 -51.93 -0.41 1.63 16 45 H 0.08 1.85 8.00 -51.93 -0.42 1.44 16 LS Contribution 365.24 15.07 5.50 5.50 Total: -1.00 -35.67 365.24 -8.28 -43.94 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.73 Total: 2.39 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: -4.08 Total: 12.08 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -0.58 Total: -67.80 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.15 Total: -13.44 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.24 Total: 17.32 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.67 -8.28 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494142623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.042 kcal (2) G-P(sol) polarization free energy of solvation -35.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds