Wall clock time and date at job start Wed Apr 1 2020 04:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99868 * 2 1 4 4 H 1.08002 * 120.00157 * 320.22279 * 3 2 1 5 5 C 1.38811 * 119.99555 * 140.22916 * 3 2 1 6 6 N 1.31621 * 119.99964 * 160.64586 * 5 3 2 7 7 Si 1.86800 * 120.00192 * 340.64207 * 5 3 2 8 8 H 1.48496 * 109.47062 * 95.26904 * 7 5 3 9 9 H 1.48508 * 109.47121 * 215.26684 * 7 5 3 10 10 H 1.48497 * 109.47117 * 335.26228 * 7 5 3 11 11 C 1.46504 * 119.99546 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47003 * 90.00325 * 11 2 1 13 13 H 1.09000 * 110.88778 * 302.56613 * 12 11 2 14 14 C 1.55165 * 111.03544 * 178.66838 * 12 11 2 15 15 C 1.54324 * 102.94026 * 206.40819 * 14 12 11 16 16 N 1.47186 * 107.29696 * 22.27775 * 15 14 12 17 17 C 1.34774 * 125.73657 * 181.03326 * 16 15 14 18 18 O 1.21577 * 120.00178 * 174.29731 * 17 16 15 19 19 C 1.47679 * 119.99942 * 354.29105 * 17 16 15 20 20 C 1.39919 * 120.38899 * 185.30347 * 19 17 16 21 21 N 1.31452 * 121.13503 * 179.71758 * 20 19 17 22 22 C 1.32465 * 121.81199 * 0.54810 * 21 20 19 23 23 N 1.37874 * 133.45003 * 179.74115 * 22 21 20 24 24 H 0.96997 * 126.25100 * 0.02562 * 23 22 21 25 25 C 1.36521 * 107.50052 * 179.97438 * 23 22 21 26 26 O 1.35262 * 125.02504 * 179.97438 * 25 23 22 27 27 N 1.30714 * 109.95269 * 0.02562 * 25 23 22 28 28 C 1.35899 * 109.40171 * 359.97438 * 27 25 23 29 29 C 1.39410 * 133.63393 * 180.02562 * 28 27 25 30 30 C 1.47419 * 108.61400 * 0.91381 * 16 15 14 31 31 H 1.08997 * 109.47113 * 275.01728 * 1 2 3 32 32 H 1.08999 * 109.47186 * 35.01884 * 1 2 3 33 33 H 1.09005 * 109.47375 * 155.02209 * 1 2 3 34 34 H 0.97002 * 120.00173 * 179.97438 * 6 5 3 35 35 H 1.08997 * 109.47131 * 329.99662 * 11 2 1 36 36 H 1.09000 * 109.46567 * 209.99771 * 11 2 1 37 37 H 1.08994 * 110.71595 * 324.76340 * 14 12 11 38 38 H 1.08998 * 110.72046 * 87.86328 * 14 12 11 39 39 H 1.08998 * 109.88529 * 141.61187 * 15 14 12 40 40 H 1.09006 * 109.87823 * 262.62005 * 15 14 12 41 41 H 1.07998 * 119.43168 * 359.97438 * 20 19 17 42 42 H 0.96701 * 114.00009 * 270.03403 * 26 25 23 43 43 H 1.08000 * 120.97061 * 359.97438 * 29 28 27 44 44 H 1.09001 * 110.36901 * 217.11390 * 30 16 15 45 45 H 1.09001 * 110.36727 * 94.89723 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7971 2.0130 -0.5984 5 6 3.2969 1.3249 0.7691 6 7 4.1578 2.2832 0.4994 7 14 3.6187 0.1520 2.1868 8 1 4.4963 -0.9534 1.7252 9 1 4.2856 0.8842 3.2935 10 1 2.3303 -0.4071 2.6690 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5156 -1.8032 -1.9924 14 6 3.2568 -3.0359 -1.4863 15 6 3.9799 -2.9575 -2.8474 16 7 4.0460 -1.5368 -3.2266 17 6 4.5855 -1.0493 -4.3613 18 8 4.4923 0.1353 -4.6187 19 6 5.2899 -1.9539 -5.2921 20 6 5.9478 -1.4412 -6.4155 21 7 6.5840 -2.2324 -7.2506 22 6 6.6236 -3.5449 -7.0761 23 7 7.1996 -4.5785 -7.7837 24 1 7.7169 -4.4964 -8.6001 25 6 6.9099 -5.7386 -7.1248 26 8 7.3041 -6.9723 -7.5150 27 7 6.1943 -5.4810 -6.0617 28 6 5.9823 -4.1415 -5.9738 29 6 5.3024 -3.3328 -5.0643 30 6 3.4208 -0.7353 -2.1590 31 1 -0.3633 0.0899 1.0237 32 1 -0.3633 0.8416 -0.5897 33 1 -0.3634 -0.9316 -0.4340 34 1 4.9593 2.3806 1.0370 35 1 1.6083 -2.0286 0.5130 36 1 3.1499 -1.1387 0.5133 37 1 3.9769 -3.0769 -0.6691 38 1 2.5866 -3.8948 -1.4514 39 1 4.9877 -3.3625 -2.7558 40 1 3.4216 -3.5190 -3.5966 41 1 5.9363 -0.3767 -6.5974 42 1 6.6796 -7.4165 -8.1048 43 1 4.8001 -3.7593 -4.2087 44 1 2.8690 0.1018 -2.5867 45 1 4.1780 -0.3737 -1.4632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494142623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:42 Heat of formation + Delta-G solvation = 47.382777 kcal Electronic energy + Delta-G solvation = -30203.883517 eV Core-core repulsion = 26030.862544 eV Total energy + Delta-G solvation = -4173.020974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.60733 -41.48401 -39.82055 -38.92477 -37.86353 -37.26471 -35.14129 -33.92172 -33.29774 -32.18840 -30.62877 -30.27858 -28.03932 -27.57051 -25.84841 -24.74123 -23.90726 -23.14717 -22.78029 -21.46997 -20.95004 -20.43518 -19.61086 -18.79175 -18.39380 -17.91723 -17.33633 -17.19725 -17.10788 -16.90923 -16.29308 -15.84607 -15.72872 -15.43638 -15.09343 -14.87186 -14.70059 -14.51166 -14.23896 -14.12251 -13.79190 -13.60235 -13.40060 -13.35408 -13.25358 -12.86741 -12.60941 -12.46725 -12.44848 -12.16790 -12.10200 -11.80852 -11.75031 -11.56049 -11.32902 -11.25098 -10.60695 -10.43467 -10.20857 -9.80569 -9.60471 -8.66716 -8.13084 -5.56310 -0.57560 -0.41839 0.94147 1.31005 1.35734 1.44065 1.55125 1.67648 1.84238 2.37177 2.45029 2.60868 3.05727 3.09572 3.31817 3.39501 3.50430 3.58715 3.72186 3.77291 3.93877 4.02647 4.06681 4.26621 4.41284 4.48549 4.59313 4.67032 4.69553 4.77832 4.79144 4.81127 4.84643 4.98723 5.06996 5.12116 5.17581 5.19071 5.23048 5.33595 5.48778 5.66250 5.99839 6.22922 6.33075 6.39037 6.47401 6.63636 7.00047 7.05770 7.68422 8.09324 9.06432 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.002667 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.086965 B =10495.989911 C =10979.026170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.628 5.628 3 C -0.250 4.250 4 H 0.028 0.972 5 C -0.020 4.020 6 N -0.952 5.952 7 Si 0.945 3.055 8 H -0.266 1.266 9 H -0.316 1.316 10 H -0.253 1.253 11 C 0.141 3.859 12 C -0.105 4.105 13 H 0.090 0.910 14 C -0.122 4.122 15 C 0.080 3.920 16 N -0.612 5.612 17 C 0.572 3.428 18 O -0.580 6.580 19 C -0.189 4.189 20 C 0.193 3.807 21 N -0.489 5.489 22 C 0.256 3.744 23 N -0.573 5.573 24 H 0.444 0.556 25 C 0.489 3.511 26 O -0.431 6.431 27 N -0.496 5.496 28 C -0.004 4.004 29 C -0.008 4.008 30 C 0.139 3.861 31 H 0.014 0.986 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.260 0.740 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.182 0.818 42 H 0.441 0.559 43 H 0.199 0.801 44 H 0.040 0.960 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -25.110 -16.099 29.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.352 5.352 3 C -0.380 4.380 4 H 0.046 0.954 5 C -0.216 4.216 6 N -0.596 5.596 7 Si 0.774 3.226 8 H -0.193 1.193 9 H -0.245 1.245 10 H -0.177 1.177 11 C 0.016 3.984 12 C -0.126 4.126 13 H 0.109 0.891 14 C -0.160 4.160 15 C -0.041 4.041 16 N -0.344 5.344 17 C 0.362 3.638 18 O -0.461 6.461 19 C -0.197 4.197 20 C 0.024 3.976 21 N -0.202 5.202 22 C 0.018 3.982 23 N -0.202 5.202 24 H 0.288 0.712 25 C 0.183 3.817 26 O -0.237 6.237 27 N -0.228 5.228 28 C -0.123 4.123 29 C -0.034 4.034 30 C 0.017 3.983 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.144 0.856 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.198 0.802 42 H 0.306 0.694 43 H 0.215 0.785 44 H 0.059 0.941 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.503 -24.766 -16.088 29.739 hybrid contribution 0.447 0.897 0.020 1.003 sum 3.950 -23.869 -16.068 29.043 Atomic orbital electron populations 1.21172 0.82361 1.00250 0.98269 1.44210 1.02321 1.01551 1.87144 1.18489 1.07134 0.91766 1.20586 0.95380 1.26135 0.97096 0.98449 0.99957 1.70022 1.11410 1.37205 1.40994 0.85832 0.78557 0.78554 0.79692 1.19281 1.24511 1.17665 1.21311 0.95845 0.87379 0.93908 1.22895 0.97741 0.94023 0.97982 0.89132 1.22823 0.99557 0.97918 0.95682 1.22904 1.02171 0.80630 0.98356 1.48669 1.57217 1.09939 1.18588 1.17925 0.78502 0.86920 0.80442 1.90806 1.61377 1.18315 1.75589 1.20419 1.06069 0.93810 0.99432 1.22814 0.88212 0.99790 0.86751 1.66550 1.20988 1.01638 1.31018 1.19038 0.97062 0.88705 0.93389 1.42994 1.46984 1.04380 1.25870 0.71220 1.20243 0.91861 0.81803 0.87823 1.84854 1.49081 1.20217 1.69584 1.70730 1.19364 1.13335 1.19383 1.19489 1.04277 0.90826 0.97742 1.22515 0.92574 0.90321 0.97963 1.21888 0.94881 0.94163 0.87370 0.96793 0.95417 0.91146 0.93130 0.89777 0.94882 0.90454 0.85568 0.88792 0.87428 0.80162 0.69406 0.78496 0.94112 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.56 10.69 127.77 1.37 5.92 16 2 N -0.63 -28.21 2.40 -726.94 -1.74 -29.95 16 3 C -0.25 -14.10 9.00 84.03 0.76 -13.34 16 4 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 5 C -0.02 -1.18 5.34 84.86 0.45 -0.73 16 6 N -0.95 -60.86 13.97 21.65 0.30 -60.55 16 7 Si 0.95 45.34 24.94 68.60 1.71 47.05 16 8 H -0.27 -11.79 6.71 99.48 0.67 -11.12 16 9 H -0.32 -15.74 7.11 99.48 0.71 -15.03 16 10 H -0.25 -11.31 7.11 99.48 0.71 -10.61 16 11 C 0.14 5.21 3.99 86.38 0.34 5.56 16 12 C -0.10 -3.31 3.29 -9.40 -0.03 -3.34 16 13 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 14 C -0.12 -2.57 6.42 31.79 0.20 -2.37 16 15 C 0.08 1.71 4.87 86.70 0.42 2.13 16 16 N -0.61 -20.37 3.33 -820.32 -2.73 -23.11 16 17 C 0.57 20.55 7.81 86.74 0.68 21.23 16 18 O -0.58 -26.37 16.59 -3.96 -0.07 -26.43 16 19 C -0.19 -5.26 5.89 -20.01 -0.12 -5.37 16 20 C 0.19 5.16 10.74 85.16 0.91 6.08 16 21 N -0.49 -12.06 10.36 -191.60 -1.99 -14.04 16 22 C 0.26 5.51 8.45 133.83 1.13 6.64 16 23 N -0.57 -7.72 6.23 -307.00 -1.91 -9.63 16 24 H 0.44 3.07 8.96 -92.71 -0.83 2.24 16 25 C 0.49 6.68 9.39 179.72 1.69 8.37 16 26 O -0.43 -2.69 13.63 -85.46 -1.16 -3.86 16 27 N -0.50 -9.89 11.32 -306.40 -3.47 -13.36 16 28 C 0.00 -0.09 7.22 39.42 0.28 0.20 16 29 C -0.01 -0.17 8.75 22.92 0.20 0.03 16 30 C 0.14 5.75 5.38 86.86 0.47 6.21 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 33 H 0.07 2.03 8.03 -2.38 -0.02 2.01 16 34 H 0.26 15.84 8.31 -92.71 -0.77 15.06 16 35 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 36 H 0.03 1.39 3.29 -2.39 -0.01 1.38 16 37 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 38 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 1.72 6.65 -2.39 -0.02 1.70 16 40 H 0.11 1.67 6.83 -2.38 -0.02 1.66 16 41 H 0.18 4.78 7.64 -2.91 -0.02 4.76 16 42 H 0.44 -2.44 9.06 -74.06 -0.67 -3.11 16 43 H 0.20 3.56 2.87 -4.98 -0.01 3.55 16 44 H 0.04 2.03 7.98 -2.39 -0.02 2.01 16 45 H 0.04 1.83 8.00 -2.39 -0.02 1.81 16 Total: -1.00 -85.82 365.24 -2.76 -88.58 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -0.46 Total: 8.07 kcal Atomic # 6 Polarization: 28.47 SS G_CDS: 8.76 Total: 37.23 kcal Atomic # 7 Polarization: -139.11 SS G_CDS: -11.54 Total: -150.65 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.23 Total: -30.29 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.71 Total: 47.05 kcal Total: -85.82 -2.76 -88.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494142623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.965 kcal (2) G-P(sol) polarization free energy of solvation -85.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds