Wall clock time and date at job start Wed Apr 1 2020 04:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00037 * 2 1 4 4 H 1.08000 * 119.99913 * 208.28835 * 3 2 1 5 5 C 1.38818 * 119.99985 * 28.29036 * 3 2 1 6 6 N 1.31618 * 119.99878 * 8.11122 * 5 3 2 7 7 Si 1.86794 * 119.99900 * 188.11337 * 5 3 2 8 8 H 1.48496 * 109.47353 * 59.99998 * 7 5 3 9 9 H 1.48504 * 109.47069 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47248 * 299.99988 * 7 5 3 11 11 C 1.46496 * 119.99813 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47280 * 89.99805 * 11 2 1 13 13 C 1.53002 * 109.47257 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47605 * 179.97438 * 13 12 11 15 15 C 1.46505 * 120.00319 * 270.00704 * 14 13 12 16 16 C 1.34773 * 119.99970 * 89.99838 * 14 13 12 17 17 O 1.21589 * 119.99924 * 4.46919 * 16 14 13 18 18 C 1.47579 * 120.00400 * 184.46720 * 16 14 13 19 19 C 1.38651 * 120.41538 * 310.65719 * 18 16 14 20 20 C 1.39254 * 120.72046 * 179.97438 * 19 18 16 21 21 F 1.35101 * 119.43440 * 179.97438 * 20 19 18 22 22 C 1.36553 * 121.13120 * 0.25156 * 20 19 18 23 23 C 1.40292 * 119.91697 * 359.50321 * 22 20 19 24 24 C 1.40712 * 122.07959 * 180.21689 * 23 22 20 25 25 C 1.36238 * 118.66920 * 180.27445 * 24 23 22 26 26 N 1.32521 * 121.83871 * 0.02562 * 25 24 23 27 27 C 1.31325 * 122.71954 * 359.96123 * 26 25 24 28 28 C 1.40112 * 119.92838 * 0.03989 * 27 26 25 29 29 H 1.08999 * 109.46987 * 265.49671 * 1 2 3 30 30 H 1.09003 * 109.46747 * 25.49463 * 1 2 3 31 31 H 1.08999 * 109.47123 * 145.49351 * 1 2 3 32 32 H 0.96996 * 119.99637 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47289 * 329.99589 * 11 2 1 34 34 H 1.09002 * 109.47026 * 209.99916 * 11 2 1 35 35 H 1.09000 * 109.47211 * 60.00191 * 12 11 2 36 36 H 1.08997 * 109.47277 * 299.99553 * 12 11 2 37 37 H 1.09004 * 109.47040 * 59.99949 * 13 12 11 38 38 H 1.09002 * 109.47298 * 300.00263 * 13 12 11 39 39 H 1.09001 * 109.46862 * 272.95079 * 15 14 13 40 40 H 1.08996 * 109.46789 * 32.94744 * 15 14 13 41 41 H 1.08990 * 109.47175 * 152.94870 * 15 14 13 42 42 H 1.08006 * 119.64234 * 359.97438 * 19 18 16 43 43 H 1.07997 * 120.04206 * 179.72263 * 22 20 19 44 44 H 1.08004 * 120.66006 * 0.28819 * 24 23 22 45 45 H 1.07999 * 119.08198 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.03726 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1330 1.2417 -0.4433 5 6 1.5800 2.3163 0.5698 6 7 0.4570 2.2161 1.2489 7 14 2.4071 3.9795 0.3726 8 1 2.5050 4.3157 -1.0705 9 1 1.6052 5.0169 1.0697 10 1 3.7690 3.9281 0.9623 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2180 -3.0345 -1.4438 14 7 3.4616 -3.4573 -2.8251 15 6 2.4849 -4.3033 -3.5155 16 6 4.5842 -3.0677 -3.4610 17 8 5.4326 -2.4340 -2.8635 18 6 4.7839 -3.4103 -4.8825 19 6 4.5968 -4.7113 -5.3240 20 6 4.7829 -5.0415 -6.6640 21 9 4.5940 -6.3174 -7.0658 22 6 5.1586 -4.0989 -7.5778 23 6 5.3531 -2.7699 -7.1725 24 6 5.7357 -1.7614 -8.0762 25 6 5.9108 -0.4947 -7.6062 26 7 5.7314 -0.1921 -6.3285 27 6 5.3745 -1.0824 -5.4315 28 6 5.1688 -2.4149 -5.8125 29 1 -0.3633 -0.0807 1.0245 30 1 -0.3633 0.9276 -0.4424 31 1 -0.3633 -0.8468 -0.5822 32 1 0.0592 3.0059 1.6473 33 1 1.6084 -2.0286 0.5130 34 1 3.1499 -1.1386 0.5133 35 1 3.0416 -0.9500 -1.9567 36 1 1.5001 -1.8400 -1.9571 37 1 2.6292 -3.7946 -0.9301 38 1 4.1704 -2.9041 -0.9300 39 1 2.6963 -5.3510 -3.3016 40 1 1.4814 -4.0570 -3.1684 41 1 2.5502 -4.1314 -4.5897 42 1 4.3034 -5.4769 -4.6210 43 1 5.3023 -4.3753 -8.6118 44 1 5.8872 -1.9871 -9.1215 45 1 6.2048 0.2844 -8.2939 46 1 5.2400 -0.7878 -4.4012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502245470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:29 Heat of formation + Delta-G solvation = 7.380027 kcal Electronic energy + Delta-G solvation = -29734.052911 eV Core-core repulsion = 25539.377327 eV Total energy + Delta-G solvation = -4194.675585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.46380 -41.47128 -39.80930 -37.38063 -36.39542 -35.38984 -33.58440 -32.28699 -31.28447 -30.59481 -29.76043 -27.20672 -26.18444 -25.67923 -24.65548 -23.98978 -23.49787 -21.97932 -20.23200 -19.88100 -18.83256 -17.95329 -17.73574 -16.88089 -16.60640 -16.37586 -16.21843 -15.94708 -15.48427 -15.20880 -14.85861 -14.65399 -14.37106 -14.24825 -13.96490 -13.79494 -13.39805 -13.29100 -12.98463 -12.94159 -12.80563 -12.63649 -12.54968 -12.02968 -11.91768 -11.74334 -11.28645 -10.94380 -10.77440 -10.75404 -10.63645 -10.40191 -10.17827 -10.03838 -9.86609 -9.76687 -9.70701 -9.41258 -8.81747 -8.54468 -8.43918 -6.60330 -5.69401 -3.18250 -0.34039 0.32613 1.25571 2.21304 2.53072 2.82517 3.44811 3.48523 3.51366 3.55709 3.66032 3.88179 4.07910 4.28531 4.31752 4.37648 4.40802 4.55675 4.75853 4.84476 4.97195 5.08897 5.11044 5.26720 5.29169 5.35820 5.41801 5.44257 5.47797 5.49344 5.59457 5.74187 5.76454 5.97761 6.05691 6.11289 6.12811 6.31453 6.47005 6.53235 6.81215 6.83291 7.03956 7.15706 7.41330 7.69826 7.72693 7.87616 7.89700 8.50534 9.31044 9.92734 10.44162 11.37437 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.002828 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.682075 B = 9899.876604 C =11544.726593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.601 5.601 3 C -0.256 4.256 4 H 0.066 0.934 5 C 0.004 3.996 6 N -0.910 5.910 7 Si 0.904 3.096 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.155 3.845 12 C -0.152 4.152 13 C 0.114 3.886 14 N -0.601 5.601 15 C 0.068 3.932 16 C 0.554 3.446 17 O -0.515 6.515 18 C -0.049 4.049 19 C -0.127 4.127 20 C 0.121 3.879 21 F -0.132 7.132 22 C -0.135 4.135 23 C -0.001 4.001 24 C -0.165 4.165 25 C 0.092 3.908 26 N -0.483 5.483 27 C 0.169 3.831 28 C -0.096 4.096 29 H 0.018 0.982 30 H 0.053 0.947 31 H -0.009 1.009 32 H 0.253 0.747 33 H 0.034 0.966 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.158 0.842 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 -17.912 -19.324 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.324 5.324 3 C -0.385 4.385 4 H 0.083 0.917 5 C -0.194 4.194 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.209 1.209 9 H -0.217 1.217 10 H -0.208 1.208 11 C 0.027 3.973 12 C -0.193 4.193 13 C -0.007 4.007 14 N -0.333 5.333 15 C -0.075 4.075 16 C 0.340 3.660 17 O -0.391 6.391 18 C -0.055 4.055 19 C -0.146 4.146 20 C 0.100 3.900 21 F -0.110 7.110 22 C -0.154 4.154 23 C -0.006 4.006 24 C -0.184 4.184 25 C -0.051 4.051 26 N -0.190 5.190 27 C -0.001 4.001 28 C -0.098 4.098 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.009 0.991 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.175 0.825 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.469 -16.563 -18.767 26.122 hybrid contribution 0.066 -0.308 -0.579 0.659 sum 7.536 -16.871 -19.346 26.753 Atomic orbital electron populations 1.20739 0.82966 0.96945 0.97450 1.43813 1.01663 1.00689 1.86190 1.19149 1.01363 0.86813 1.31208 0.91665 1.25142 0.97869 0.98916 0.97473 1.70025 1.20104 1.28316 1.36993 0.86344 0.78842 0.83660 0.77771 1.20942 1.21655 1.20776 1.20618 0.96208 0.88520 0.91953 1.22625 0.99278 0.95083 1.02341 1.21721 1.01853 0.97344 0.79825 1.47875 1.19897 1.50369 1.15199 1.22065 0.93373 0.94084 0.98000 1.18028 0.82394 0.80063 0.85483 1.90871 1.42425 1.39130 1.66705 1.19810 0.98812 0.93062 0.93783 1.21410 1.01550 0.96943 0.94723 1.17195 1.00750 0.79342 0.92674 1.91555 1.92595 1.35824 1.91047 1.21011 1.02215 0.91646 1.00550 1.17776 0.96947 0.93499 0.92376 1.21865 1.02620 0.93558 1.00391 1.22405 0.94934 0.95530 0.92232 1.67626 1.11682 1.37292 1.02446 1.23584 0.89527 0.87076 0.99919 1.18799 1.02546 0.95634 0.92865 0.96396 0.92832 0.99077 0.93718 0.94769 0.93317 0.91773 0.92780 0.90423 0.89462 0.92156 0.90237 0.90809 0.83283 0.83399 0.83906 0.82459 0.80770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 8.99 59.85 0.54 4.63 16 2 N -0.60 -15.45 2.91 -181.12 -0.53 -15.97 16 3 C -0.26 -7.24 9.61 -15.06 -0.14 -7.39 16 4 H 0.07 1.84 7.84 -52.49 -0.41 1.42 16 5 C 0.00 0.12 5.12 -17.43 -0.09 0.03 16 6 N -0.91 -27.07 10.84 55.49 0.60 -26.47 16 7 Si 0.90 22.51 29.56 -169.99 -5.03 17.49 16 8 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.16 3.17 5.69 -4.05 -0.02 3.15 16 12 C -0.15 -2.62 5.86 -26.73 -0.16 -2.77 16 13 C 0.11 1.53 5.46 -4.04 -0.02 1.51 16 14 N -0.60 -7.17 2.87 -182.79 -0.53 -7.69 16 15 C 0.07 0.55 9.10 59.85 0.54 1.10 16 16 C 0.55 7.51 6.67 -12.45 -0.08 7.43 16 17 O -0.52 -8.81 14.99 5.29 0.08 -8.73 16 18 C -0.05 -0.56 4.91 -104.67 -0.51 -1.07 16 19 C -0.13 -1.11 7.57 -39.05 -0.30 -1.41 16 20 C 0.12 1.00 7.22 -39.81 -0.29 0.71 16 21 F -0.13 -1.09 17.24 2.25 0.04 -1.05 16 22 C -0.14 -1.06 9.75 -39.42 -0.38 -1.44 16 23 C 0.00 -0.01 5.74 -106.84 -0.61 -0.62 16 24 C -0.16 -1.37 9.88 -39.37 -0.39 -1.76 16 25 C 0.09 0.92 11.07 -17.97 -0.20 0.72 16 26 N -0.48 -6.54 10.30 -13.22 -0.14 -6.68 16 27 C 0.17 2.35 10.46 -17.07 -0.18 2.17 16 28 C -0.10 -1.15 5.76 -106.58 -0.61 -1.76 16 29 H 0.02 0.47 7.78 -51.93 -0.40 0.07 16 30 H 0.05 1.45 6.93 -51.93 -0.36 1.09 16 31 H -0.01 -0.20 8.11 -51.93 -0.42 -0.62 16 32 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 34 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 38 H 0.09 1.28 7.37 -51.93 -0.38 0.89 16 39 H 0.06 0.36 7.58 -51.93 -0.39 -0.03 16 40 H 0.08 0.63 8.09 -51.93 -0.42 0.20 16 41 H 0.07 0.56 5.69 -51.93 -0.30 0.27 16 42 H 0.15 1.02 6.58 -52.48 -0.35 0.67 16 43 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 45 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.18 2.67 6.32 -52.49 -0.33 2.34 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -33.98 384.13 -8.89 -42.87 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -6.27 Total: -2.79 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.91 Total: 3.24 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.59 Total: -56.81 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.73 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.98 -8.89 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502245470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.249 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds