Wall clock time and date at job start Wed Apr 1 2020 04:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36930 * 120.00299 * 2 1 4 4 H 1.08005 * 119.99796 * 321.77265 * 3 2 1 5 5 C 1.38812 * 120.00185 * 141.76889 * 3 2 1 6 6 N 1.31615 * 119.99884 * 156.12460 * 5 3 2 7 7 Si 1.86803 * 120.00035 * 336.12649 * 5 3 2 8 8 H 1.48504 * 109.47093 * 95.41406 * 7 5 3 9 9 H 1.48492 * 109.47076 * 215.41685 * 7 5 3 10 10 H 1.48504 * 109.47033 * 335.42108 * 7 5 3 11 11 C 1.46500 * 119.99613 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46891 * 90.00118 * 11 2 1 13 13 H 1.09007 * 110.88748 * 54.29917 * 12 11 2 14 14 C 1.55164 * 111.00518 * 178.17815 * 12 11 2 15 15 C 1.54370 * 102.91919 * 153.54891 * 14 12 11 16 16 N 1.47022 * 107.29037 * 337.85946 * 15 14 12 17 17 C 1.34776 * 125.64795 * 178.87590 * 16 15 14 18 18 O 1.21551 * 119.99842 * 180.02562 * 17 16 15 19 19 C 1.47852 * 120.00043 * 0.04119 * 17 16 15 20 20 C 1.39720 * 119.43718 * 179.73409 * 19 17 16 21 21 C 1.36995 * 119.59130 * 179.75998 * 20 19 17 22 22 C 1.39899 * 118.36983 * 0.46365 * 21 20 19 23 23 N 1.35417 * 133.68467 * 179.79658 * 22 21 20 24 24 C 1.30933 * 109.56706 * 180.02562 * 23 22 21 25 25 O 1.35188 * 124.99763 * 179.97438 * 24 23 22 26 26 N 1.36385 * 110.00698 * 359.97438 * 24 23 22 27 27 H 0.97002 * 126.32389 * 180.02562 * 26 24 23 28 28 C 1.38250 * 107.36175 * 0.02562 * 26 24 23 29 29 N 1.31765 * 133.71499 * 180.02562 * 28 26 24 30 30 C 1.47429 * 108.70021 * 358.91023 * 16 15 14 31 31 H 1.08997 * 109.47093 * 85.83787 * 1 2 3 32 32 H 1.09004 * 109.47047 * 325.84099 * 1 2 3 33 33 H 1.08999 * 109.47131 * 205.83955 * 1 2 3 34 34 H 0.97008 * 119.99583 * 180.02562 * 6 5 3 35 35 H 1.08999 * 109.47479 * 209.99673 * 11 2 1 36 36 H 1.09002 * 109.47428 * 330.00311 * 11 2 1 37 37 H 1.09002 * 110.71883 * 271.93948 * 14 12 11 38 38 H 1.09004 * 110.71855 * 35.21056 * 14 12 11 39 39 H 1.09009 * 109.89418 * 218.42346 * 15 14 12 40 40 H 1.08993 * 109.97650 * 97.34303 * 15 14 12 41 41 H 1.08003 * 120.20110 * 359.97227 * 20 19 17 42 42 H 1.07998 * 120.81344 * 180.23957 * 21 20 19 43 43 H 0.96703 * 113.99667 * 270.00075 * 25 24 23 44 44 H 1.08996 * 110.36828 * 265.28483 * 30 16 15 45 45 H 1.09003 * 110.45643 * 143.01692 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7834 2.0209 -0.5788 5 6 3.3146 1.3147 0.7439 6 7 4.2108 2.2195 0.4117 7 14 3.6100 0.2040 2.2165 8 1 4.4350 -0.9591 1.8017 9 1 4.3226 0.9641 3.2747 10 1 2.3074 -0.2760 2.7438 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 1 2.9533 -0.9247 -2.0066 14 6 3.2674 -3.0308 -1.4831 15 6 2.8473 -3.6538 -2.8315 16 7 1.5491 -3.0689 -3.1976 17 6 0.8546 -3.3390 -4.3206 18 8 -0.2132 -2.7937 -4.5207 19 6 1.3912 -4.2988 -5.3089 20 6 0.6587 -4.5743 -6.4664 21 6 1.1553 -5.4594 -7.3866 22 6 2.3872 -6.0688 -7.1253 23 7 3.1470 -6.9675 -7.7953 24 6 4.2339 -7.2200 -7.1104 25 8 5.2099 -8.0740 -7.4920 26 7 4.2366 -6.4949 -5.9553 27 1 4.9277 -6.5009 -5.2747 28 6 3.0723 -5.7496 -5.9333 29 7 2.5584 -4.8884 -5.0787 30 6 1.1334 -2.1373 -2.1333 31 1 -0.3633 0.0746 -1.0249 32 1 -0.3633 0.8504 0.5770 33 1 -0.3633 -0.9249 0.4479 34 1 5.0250 2.3093 0.9313 35 1 3.1499 -1.1383 0.5143 36 1 1.6083 -2.0282 0.5147 37 1 4.3375 -2.8238 -1.4698 38 1 2.9892 -3.6819 -0.6543 39 1 2.7507 -4.7345 -2.7268 40 1 3.5880 -3.4204 -3.5963 41 1 -0.2915 -4.0899 -6.6362 42 1 0.6075 -5.6839 -8.2898 43 1 5.0787 -8.9825 -7.1876 44 1 0.4782 -2.6411 -1.4228 45 1 0.6317 -1.2694 -2.5612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567736960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:52 Heat of formation + Delta-G solvation = 62.282478 kcal Electronic energy + Delta-G solvation = -29962.748053 eV Core-core repulsion = 25790.373179 eV Total energy + Delta-G solvation = -4172.374874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.85565 -40.33081 -38.98044 -37.79320 -37.10865 -35.56079 -34.27226 -32.25953 -31.68977 -31.26158 -29.91725 -28.87253 -26.80666 -25.67627 -24.61939 -23.68855 -22.85351 -22.21533 -21.07578 -20.33529 -19.98142 -19.69548 -18.29743 -17.91448 -17.44115 -16.82115 -16.53448 -16.01915 -15.63088 -15.39436 -15.18049 -14.88804 -14.50289 -13.88598 -13.78579 -13.71618 -13.41431 -13.06784 -13.00124 -12.73652 -12.68500 -12.43750 -12.29929 -12.19504 -11.78489 -11.73963 -11.61585 -11.32515 -10.93652 -10.83301 -10.82097 -10.36740 -10.22963 -10.17651 -9.82512 -9.59015 -9.48913 -9.41465 -8.90634 -8.52353 -8.45128 -6.79297 -6.02356 -3.42995 -0.02831 0.79193 1.54296 1.91079 2.69711 2.90156 3.07373 3.26628 3.44298 3.50074 3.56970 3.73417 4.06139 4.36756 4.46243 4.50100 4.63100 4.85220 4.90836 5.12658 5.21097 5.25671 5.30427 5.38301 5.55632 5.59653 5.63389 5.74410 5.94522 5.97688 6.00646 6.07926 6.11034 6.16617 6.24031 6.29575 6.31794 6.50735 6.62481 6.71457 6.77531 6.86164 6.92745 7.04735 7.24858 7.57764 8.04330 8.11891 8.38656 8.98754 9.69880 10.11811 11.13396 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.002553 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.158777 B =10965.704060 C =12026.770483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.611 5.611 3 C -0.269 4.269 4 H 0.077 0.923 5 C 0.037 3.963 6 N -0.897 5.897 7 Si 0.874 3.126 8 H -0.285 1.285 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.150 3.850 12 C -0.114 4.114 13 H 0.093 0.907 14 C -0.137 4.137 15 C 0.121 3.879 16 N -0.593 5.593 17 C 0.581 3.419 18 O -0.532 6.532 19 C 0.130 3.870 20 C -0.118 4.118 21 C -0.027 4.027 22 C 0.034 3.966 23 N -0.479 5.479 24 C 0.475 3.525 25 O -0.437 6.437 26 N -0.586 5.586 27 H 0.431 0.569 28 C 0.245 3.755 29 N -0.443 5.443 30 C 0.118 3.882 31 H 0.012 0.988 32 H 0.042 0.958 33 H 0.027 0.973 34 H 0.263 0.737 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.415 0.585 44 H 0.065 0.935 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 -23.305 -12.773 26.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.335 5.335 3 C -0.397 4.397 4 H 0.095 0.905 5 C -0.163 4.163 6 N -0.538 5.538 7 Si 0.704 3.296 8 H -0.213 1.213 9 H -0.229 1.229 10 H -0.194 1.194 11 C 0.023 3.977 12 C -0.135 4.135 13 H 0.111 0.889 14 C -0.176 4.176 15 C -0.001 4.001 16 N -0.325 5.325 17 C 0.367 3.633 18 O -0.408 6.408 19 C -0.018 4.018 20 C -0.142 4.142 21 C -0.054 4.054 22 C -0.088 4.088 23 N -0.211 5.211 24 C 0.169 3.831 25 O -0.239 6.239 26 N -0.213 5.213 27 H 0.272 0.728 28 C 0.007 3.993 29 N -0.159 5.159 30 C -0.003 4.003 31 H 0.030 0.970 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.179 0.821 42 H 0.170 0.830 43 H 0.275 0.725 44 H 0.083 0.917 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.412 -22.696 -13.238 26.278 hybrid contribution 0.734 -1.026 1.399 1.884 sum 0.322 -23.723 -11.838 26.514 Atomic orbital electron populations 1.21177 0.84469 0.98827 0.97908 1.44058 1.00801 1.01943 1.86661 1.18743 1.06148 0.90943 1.23903 0.90496 1.25501 0.96746 0.96398 0.97701 1.69907 1.08092 1.36719 1.39070 0.86968 0.77957 0.79905 0.84796 1.21290 1.22901 1.19429 1.21130 0.96704 0.87755 0.92064 1.23098 0.93878 0.95994 1.00574 0.88883 1.22828 1.01078 0.97563 0.96151 1.22069 0.84359 0.97295 0.96423 1.48451 1.21577 1.43080 1.19387 1.17270 0.84057 0.81607 0.80370 1.90821 1.21496 1.52007 1.76496 1.20975 0.89726 0.96064 0.95060 1.21610 1.01877 0.97883 0.92792 1.20464 0.91837 0.93441 0.99666 1.19669 0.97099 0.98895 0.93123 1.70650 1.02387 1.18594 1.29505 1.20223 0.88462 0.91926 0.82441 1.84841 1.41021 1.23011 1.74984 1.43039 1.19296 1.38064 1.20910 0.72845 1.18534 0.88788 0.97140 0.94828 1.66581 1.12119 1.07032 1.30197 1.22423 0.97753 0.92223 0.87929 0.96998 0.93924 0.95465 0.92726 0.92285 0.94069 0.90156 0.91022 0.91390 0.90994 0.82124 0.82980 0.72519 0.91665 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.41 10.01 59.85 0.60 3.01 16 2 N -0.61 -14.20 2.40 -181.12 -0.44 -14.63 16 3 C -0.27 -7.40 9.91 -15.06 -0.15 -7.55 16 4 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 5 C 0.04 1.05 5.27 -17.43 -0.09 0.96 16 6 N -0.90 -26.92 13.97 55.49 0.78 -26.15 16 7 Si 0.87 21.54 25.19 -169.99 -4.28 17.26 16 8 H -0.28 -6.68 6.66 56.52 0.38 -6.31 16 9 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 C 0.15 3.06 4.07 -4.04 -0.02 3.04 16 12 C -0.11 -2.02 3.27 -88.47 -0.29 -2.31 16 13 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 14 C -0.14 -1.93 6.43 -24.87 -0.16 -2.09 16 15 C 0.12 1.60 5.39 -3.04 -0.02 1.58 16 16 N -0.59 -9.15 3.33 -171.60 -0.57 -9.72 16 17 C 0.58 9.07 7.83 -12.33 -0.10 8.97 16 18 O -0.53 -9.58 16.54 5.32 0.09 -9.49 16 19 C 0.13 1.68 6.72 -82.97 -0.56 1.12 16 20 C -0.12 -1.25 9.55 -39.48 -0.38 -1.63 16 21 C -0.03 -0.25 10.16 -39.41 -0.40 -0.65 16 22 C 0.03 0.37 7.24 -84.56 -0.61 -0.25 16 23 N -0.48 -5.04 11.30 -12.11 -0.14 -5.18 16 24 C 0.47 3.74 9.39 -88.78 -0.83 2.91 16 25 O -0.44 -2.07 13.62 -17.26 -0.24 -2.31 16 26 N -0.59 -4.44 6.25 -13.33 -0.08 -4.52 16 27 H 0.43 2.07 8.96 -40.82 -0.37 1.70 16 28 C 0.24 2.62 8.46 -155.52 -1.32 1.31 16 29 N -0.44 -5.33 6.82 -8.77 -0.06 -5.39 16 30 C 0.12 1.98 5.56 -2.53 -0.01 1.97 16 31 H 0.01 0.23 7.64 -51.93 -0.40 -0.17 16 32 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.03 0.47 7.84 -51.93 -0.41 0.06 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 35 H 0.06 1.32 3.48 -51.93 -0.18 1.14 16 36 H 0.04 0.75 7.76 -51.93 -0.40 0.35 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 39 H 0.07 0.81 7.53 -51.92 -0.39 0.42 16 40 H 0.07 0.95 7.39 -51.93 -0.38 0.56 16 41 H 0.16 1.52 7.61 -52.48 -0.40 1.12 16 42 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.42 -0.38 9.06 45.56 0.41 0.03 16 44 H 0.07 1.05 7.96 -51.93 -0.41 0.63 16 45 H 0.08 1.57 7.55 -51.93 -0.39 1.18 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -35.37 369.14 -8.72 -44.09 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.01 Total: 0.09 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: -4.33 Total: 10.40 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.51 Total: -65.60 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.15 Total: -11.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.28 Total: 17.26 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.37 -8.72 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567736960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.372 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds