Wall clock time and date at job start Wed Apr 1 2020 04:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36930 * 120.00299 * 2 1 4 4 H 1.08005 * 119.99796 * 321.77265 * 3 2 1 5 5 C 1.38812 * 120.00185 * 141.76889 * 3 2 1 6 6 N 1.31615 * 119.99884 * 156.12460 * 5 3 2 7 7 Si 1.86803 * 120.00035 * 336.12649 * 5 3 2 8 8 H 1.48504 * 109.47093 * 95.41406 * 7 5 3 9 9 H 1.48492 * 109.47076 * 215.41685 * 7 5 3 10 10 H 1.48504 * 109.47033 * 335.42108 * 7 5 3 11 11 C 1.46500 * 119.99613 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46891 * 90.00118 * 11 2 1 13 13 H 1.09007 * 110.88748 * 54.29917 * 12 11 2 14 14 C 1.55164 * 111.00518 * 178.17815 * 12 11 2 15 15 C 1.54370 * 102.91919 * 153.54891 * 14 12 11 16 16 N 1.47022 * 107.29037 * 337.85946 * 15 14 12 17 17 C 1.34776 * 125.64795 * 178.87590 * 16 15 14 18 18 O 1.21551 * 119.99842 * 180.02562 * 17 16 15 19 19 C 1.47852 * 120.00043 * 0.04119 * 17 16 15 20 20 C 1.39720 * 119.43718 * 179.73409 * 19 17 16 21 21 C 1.36995 * 119.59130 * 179.75998 * 20 19 17 22 22 C 1.39899 * 118.36983 * 0.46365 * 21 20 19 23 23 N 1.35417 * 133.68467 * 179.79658 * 22 21 20 24 24 C 1.30933 * 109.56706 * 180.02562 * 23 22 21 25 25 O 1.35188 * 124.99763 * 179.97438 * 24 23 22 26 26 N 1.36385 * 110.00698 * 359.97438 * 24 23 22 27 27 H 0.97002 * 126.32389 * 180.02562 * 26 24 23 28 28 C 1.38250 * 107.36175 * 0.02562 * 26 24 23 29 29 N 1.31765 * 133.71499 * 180.02562 * 28 26 24 30 30 C 1.47429 * 108.70021 * 358.91023 * 16 15 14 31 31 H 1.08997 * 109.47093 * 85.83787 * 1 2 3 32 32 H 1.09004 * 109.47047 * 325.84099 * 1 2 3 33 33 H 1.08999 * 109.47131 * 205.83955 * 1 2 3 34 34 H 0.97008 * 119.99583 * 180.02562 * 6 5 3 35 35 H 1.08999 * 109.47479 * 209.99673 * 11 2 1 36 36 H 1.09002 * 109.47428 * 330.00311 * 11 2 1 37 37 H 1.09002 * 110.71883 * 271.93948 * 14 12 11 38 38 H 1.09004 * 110.71855 * 35.21056 * 14 12 11 39 39 H 1.09009 * 109.89418 * 218.42346 * 15 14 12 40 40 H 1.08993 * 109.97650 * 97.34303 * 15 14 12 41 41 H 1.08003 * 120.20110 * 359.97227 * 20 19 17 42 42 H 1.07998 * 120.81344 * 180.23957 * 21 20 19 43 43 H 0.96703 * 113.99667 * 270.00075 * 25 24 23 44 44 H 1.08996 * 110.36828 * 265.28483 * 30 16 15 45 45 H 1.09003 * 110.45643 * 143.01692 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7834 2.0209 -0.5788 5 6 3.3146 1.3147 0.7439 6 7 4.2108 2.2195 0.4117 7 14 3.6100 0.2040 2.2165 8 1 4.4350 -0.9591 1.8017 9 1 4.3226 0.9641 3.2747 10 1 2.3074 -0.2760 2.7438 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 1 2.9533 -0.9247 -2.0066 14 6 3.2674 -3.0308 -1.4831 15 6 2.8473 -3.6538 -2.8315 16 7 1.5491 -3.0689 -3.1976 17 6 0.8546 -3.3390 -4.3206 18 8 -0.2132 -2.7937 -4.5207 19 6 1.3912 -4.2988 -5.3089 20 6 0.6587 -4.5743 -6.4664 21 6 1.1553 -5.4594 -7.3866 22 6 2.3872 -6.0688 -7.1253 23 7 3.1470 -6.9675 -7.7953 24 6 4.2339 -7.2200 -7.1104 25 8 5.2099 -8.0740 -7.4920 26 7 4.2366 -6.4949 -5.9553 27 1 4.9277 -6.5009 -5.2747 28 6 3.0723 -5.7496 -5.9333 29 7 2.5584 -4.8884 -5.0787 30 6 1.1334 -2.1373 -2.1333 31 1 -0.3633 0.0746 -1.0249 32 1 -0.3633 0.8504 0.5770 33 1 -0.3633 -0.9249 0.4479 34 1 5.0250 2.3093 0.9313 35 1 3.1499 -1.1383 0.5143 36 1 1.6083 -2.0282 0.5147 37 1 4.3375 -2.8238 -1.4698 38 1 2.9892 -3.6819 -0.6543 39 1 2.7507 -4.7345 -2.7268 40 1 3.5880 -3.4204 -3.5963 41 1 -0.2915 -4.0899 -6.6362 42 1 0.6075 -5.6839 -8.2898 43 1 5.0787 -8.9825 -7.1876 44 1 0.4782 -2.6411 -1.4228 45 1 0.6317 -1.2694 -2.5612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567736960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:51 Heat of formation + Delta-G solvation = 33.780332 kcal Electronic energy + Delta-G solvation = -29963.983999 eV Core-core repulsion = 25790.373179 eV Total energy + Delta-G solvation = -4173.610820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.56443 -41.41512 -39.84194 -38.93967 -37.85331 -37.22191 -35.02001 -33.93812 -33.06533 -32.37718 -30.80532 -30.14387 -28.39947 -27.31372 -25.66693 -24.56047 -23.93619 -22.94857 -22.78475 -21.56610 -21.13099 -20.39138 -19.09464 -18.73262 -18.55236 -18.46828 -17.55339 -17.24598 -16.87225 -16.67490 -16.28261 -15.98180 -15.58387 -15.32022 -15.11621 -14.84076 -14.57663 -14.44929 -14.27739 -13.97004 -13.91304 -13.72344 -13.42394 -13.29549 -13.22834 -12.89603 -12.69817 -12.51107 -12.46738 -12.32921 -12.20750 -11.92200 -11.78518 -11.53495 -11.41430 -11.33615 -10.60267 -10.40231 -10.16057 -9.79826 -9.55341 -8.72115 -8.19503 -5.58041 -0.82195 0.02116 0.91314 1.16093 1.32054 1.45000 1.56642 1.72052 1.83161 2.39184 2.43991 2.66779 2.97660 3.03791 3.23606 3.41691 3.59807 3.72156 3.74916 3.85057 3.89515 4.02640 4.33026 4.42026 4.47753 4.51607 4.53872 4.66735 4.74152 4.80935 4.84800 4.88957 4.91168 4.92533 5.01066 5.07405 5.14914 5.21594 5.24753 5.33976 5.45552 5.65493 5.95548 6.18422 6.27508 6.37806 6.42325 6.59501 6.94637 7.01382 7.64707 8.06786 9.00748 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.002553 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.158777 B =10965.704060 C =12026.770483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.624 5.624 3 C -0.264 4.264 4 H 0.031 0.969 5 C -0.018 4.018 6 N -0.948 5.948 7 Si 0.944 3.056 8 H -0.262 1.262 9 H -0.310 1.310 10 H -0.258 1.258 11 C 0.146 3.854 12 C -0.111 4.111 13 H 0.052 0.948 14 C -0.127 4.127 15 C 0.129 3.871 16 N -0.599 5.599 17 C 0.578 3.422 18 O -0.566 6.566 19 C 0.105 3.895 20 C -0.115 4.115 21 C -0.022 4.022 22 C 0.029 3.971 23 N -0.511 5.511 24 C 0.498 3.502 25 O -0.434 6.434 26 N -0.573 5.573 27 H 0.444 0.556 28 C 0.231 3.769 29 N -0.446 5.446 30 C 0.127 3.873 31 H 0.012 0.988 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.264 0.736 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.167 0.833 42 H 0.179 0.821 43 H 0.442 0.558 44 H 0.080 0.920 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 -27.492 -12.588 30.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.348 5.348 3 C -0.394 4.394 4 H 0.048 0.952 5 C -0.215 4.215 6 N -0.592 5.592 7 Si 0.772 3.228 8 H -0.188 1.188 9 H -0.239 1.239 10 H -0.182 1.182 11 C 0.021 3.979 12 C -0.132 4.132 13 H 0.071 0.929 14 C -0.166 4.166 15 C 0.007 3.993 16 N -0.330 5.330 17 C 0.366 3.634 18 O -0.445 6.445 19 C -0.041 4.041 20 C -0.139 4.139 21 C -0.049 4.049 22 C -0.093 4.093 23 N -0.244 5.244 24 C 0.193 3.807 25 O -0.240 6.240 26 N -0.203 5.203 27 H 0.288 0.712 28 C -0.008 4.008 29 N -0.162 5.162 30 C 0.005 3.995 31 H 0.030 0.970 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.184 0.816 42 H 0.197 0.803 43 H 0.307 0.693 44 H 0.098 0.902 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.220 -26.960 -13.039 29.948 hybrid contribution 0.603 0.201 1.158 1.321 sum 0.823 -26.759 -11.881 29.290 Atomic orbital electron populations 1.21232 0.82580 1.00307 0.98181 1.44174 1.02126 1.01596 1.86924 1.18555 1.06335 0.91662 1.22805 0.95175 1.26132 0.96459 0.98612 1.00279 1.70044 1.08953 1.39680 1.40497 0.85830 0.78449 0.78441 0.80085 1.18783 1.23892 1.18200 1.21249 0.96078 0.87061 0.93554 1.22816 0.94978 0.96906 0.98530 0.92926 1.22836 1.00874 0.95413 0.97465 1.22111 0.83163 0.98167 0.95827 1.48522 1.22363 1.42858 1.19239 1.17700 0.83638 0.81584 0.80513 1.90786 1.23015 1.53468 1.77237 1.20605 0.90987 0.97094 0.95450 1.21658 1.01906 0.98043 0.92267 1.20717 0.91595 0.92466 1.00097 1.19973 0.97493 0.98685 0.93164 1.70672 1.03650 1.19589 1.30485 1.20310 0.87743 0.91092 0.81566 1.84824 1.39749 1.24518 1.74906 1.43002 1.18774 1.37264 1.21218 0.71242 1.18654 0.89891 0.97406 0.94835 1.66416 1.11806 1.07277 1.30750 1.22186 0.97103 0.91777 0.88449 0.96974 0.94609 0.91977 0.92756 0.93962 0.90717 0.89472 0.88595 0.89317 0.91128 0.81579 0.80332 0.69292 0.90200 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.75 10.01 127.77 1.28 6.03 16 2 N -0.62 -28.96 2.40 -726.93 -1.75 -30.70 16 3 C -0.26 -15.04 9.91 84.03 0.83 -14.21 16 4 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 5 C -0.02 -1.05 5.27 84.86 0.45 -0.60 16 6 N -0.95 -59.01 13.97 21.65 0.30 -58.70 16 7 Si 0.94 44.44 25.19 68.60 1.73 46.17 16 8 H -0.26 -11.23 6.66 99.48 0.66 -10.57 16 9 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 11 C 0.15 5.69 4.07 86.38 0.35 6.05 16 12 C -0.11 -3.87 3.27 -9.40 -0.03 -3.90 16 13 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 14 C -0.13 -3.25 6.43 31.80 0.20 -3.05 16 15 C 0.13 3.15 5.39 86.74 0.47 3.62 16 16 N -0.60 -18.12 3.33 -815.09 -2.71 -20.84 16 17 C 0.58 18.10 7.83 86.79 0.68 18.78 16 18 O -0.57 -20.90 16.54 -3.88 -0.06 -20.96 16 19 C 0.11 2.66 6.72 41.91 0.28 2.94 16 20 C -0.12 -2.35 9.55 22.34 0.21 -2.14 16 21 C -0.02 -0.37 10.16 22.38 0.23 -0.14 16 22 C 0.03 0.57 7.24 39.71 0.29 0.86 16 23 N -0.51 -9.55 11.30 -306.02 -3.46 -13.01 16 24 C 0.50 6.40 9.39 179.70 1.69 8.09 16 25 O -0.43 -2.59 13.62 -84.68 -1.15 -3.75 16 26 N -0.57 -7.14 6.25 -307.02 -1.92 -9.06 16 27 H 0.44 2.92 8.96 -92.71 -0.83 2.09 16 28 C 0.23 4.51 8.46 134.00 1.13 5.64 16 29 N -0.45 -10.11 6.82 -181.67 -1.24 -11.34 16 30 C 0.13 4.22 5.56 86.85 0.48 4.70 16 31 H 0.01 0.47 7.64 -2.39 -0.02 0.45 16 32 H 0.04 1.42 8.07 -2.38 -0.02 1.40 16 33 H 0.06 2.00 7.84 -2.39 -0.02 1.98 16 34 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 35 H 0.04 1.80 3.48 -2.39 -0.01 1.79 16 36 H 0.07 2.43 7.76 -2.39 -0.02 2.41 16 37 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.10 2.04 8.04 -2.38 -0.02 2.02 16 39 H 0.09 1.84 7.53 -2.38 -0.02 1.82 16 40 H 0.07 1.76 7.39 -2.39 -0.02 1.74 16 41 H 0.17 3.11 7.61 -2.91 -0.02 3.08 16 42 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.44 -2.56 9.06 -74.06 -0.67 -3.23 16 44 H 0.08 2.41 7.96 -2.39 -0.02 2.40 16 45 H 0.05 2.08 7.55 -2.39 -0.02 2.06 16 Total: -1.00 -80.09 369.14 -2.20 -82.29 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -0.48 Total: 7.24 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: 8.54 Total: 32.66 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -10.77 Total: -143.65 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -1.22 Total: -24.71 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.73 Total: 46.17 kcal Total: -80.09 -2.20 -82.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567736960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.068 kcal (2) G-P(sol) polarization free energy of solvation -80.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds