Wall clock time and date at job start Wed Apr 1 2020 03:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35082 * 125.91240 * 2 1 4 4 C 1.35013 * 108.03327 * 179.74715 * 3 2 1 5 5 C 1.41043 * 107.84054 * 0.39947 * 4 3 2 6 6 C 1.47856 * 126.06263 * 179.85654 * 5 4 3 7 7 C 1.36735 * 126.81742 * 180.02562 * 6 5 4 8 8 C 1.41889 * 103.81578 * 180.10496 * 7 6 5 9 9 C 1.48349 * 126.84001 * 179.89543 * 8 7 6 10 10 O 1.21493 * 119.99995 * 359.71022 * 9 8 7 11 11 N 1.34780 * 120.00095 * 179.70325 * 9 8 7 12 12 C 1.47426 * 125.64293 * 4.79425 * 11 9 8 13 13 C 1.54907 * 104.82665 * 204.15977 * 12 11 9 14 14 C 1.55150 * 101.58578 * 322.99340 * 13 12 11 15 15 C 1.47017 * 125.64800 * 184.83471 * 11 9 8 16 16 H 1.08995 * 109.88261 * 59.33725 * 15 11 9 17 17 C 1.53001 * 109.88099 * 298.32048 * 15 11 9 18 18 N 1.46502 * 109.46829 * 175.91744 * 17 15 11 19 19 C 1.36937 * 120.00078 * 174.94595 * 18 17 15 20 20 H 1.08004 * 120.00020 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00359 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99941 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47209 * 180.02562 * 23 21 19 25 25 H 1.48498 * 109.46733 * 300.00066 * 23 21 19 26 26 H 1.48499 * 109.46980 * 59.99899 * 23 21 19 27 27 N 1.31091 * 106.31773 * 359.62665 * 8 7 6 28 28 O 1.20878 * 111.76947 * 0.24475 * 27 8 7 29 29 N 1.31812 * 107.86809 * 359.59925 * 5 4 3 30 30 H 1.08999 * 109.46937 * 269.97495 * 1 2 3 31 31 H 1.08998 * 109.47063 * 29.96820 * 1 2 3 32 32 H 1.09003 * 109.47390 * 149.96866 * 1 2 3 33 33 H 1.08001 * 125.98303 * 0.02562 * 3 2 1 34 34 H 1.07997 * 126.07868 * 180.27314 * 4 3 2 35 35 H 1.07997 * 128.08927 * 359.97360 * 7 6 5 36 36 H 1.08993 * 110.37142 * 323.00116 * 12 11 9 37 37 H 1.09000 * 110.36577 * 85.21541 * 12 11 9 38 38 H 1.09005 * 111.00855 * 81.06946 * 13 12 11 39 39 H 1.09001 * 111.00312 * 204.91714 * 13 12 11 40 40 H 1.09005 * 110.72179 * 277.13887 * 14 13 12 41 41 H 1.09001 * 110.72257 * 153.87012 * 14 13 12 42 42 H 1.08996 * 109.46861 * 55.92270 * 17 15 11 43 43 H 1.08996 * 109.47397 * 295.91711 * 17 15 11 44 44 H 0.96995 * 120.00323 * 354.93895 * 18 17 15 45 45 H 0.96994 * 119.99935 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2573 1.0941 0.0000 4 6 3.5423 0.6796 0.0057 5 6 3.5413 -0.7309 0.0000 6 6 4.7360 -1.6020 0.0003 7 6 4.7531 -2.9693 -0.0057 8 6 6.1351 -3.2908 0.0002 9 6 6.7323 -4.6488 -0.0005 10 8 6.0138 -5.6284 -0.0013 11 7 8.0721 -4.7957 -0.0004 12 6 9.0562 -3.7027 0.1005 13 6 10.3438 -4.2672 -0.5500 14 6 10.3027 -5.7479 -0.0883 15 6 8.7940 -6.0724 -0.1017 16 1 8.5290 -6.5754 -1.0316 17 6 8.4431 -6.9646 1.0907 18 7 9.0899 -8.2695 0.9312 19 6 9.0044 -9.2026 1.9297 20 1 8.4598 -8.9769 2.8347 21 6 9.6166 -10.4391 1.7785 22 7 10.2799 -10.7145 0.6754 23 14 9.4994 -11.7124 3.1403 24 1 10.2327 -12.9387 2.7359 25 1 10.0996 -11.1644 4.3832 26 1 8.0731 -12.0458 3.3847 27 7 6.7790 -2.1489 0.0005 28 8 6.0213 -1.2071 0.0006 29 7 2.2865 -1.1345 -0.0001 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3634 -0.8897 -0.5143 33 1 1.9217 2.1206 0.0004 34 1 4.4155 1.3150 0.0113 35 1 3.9116 -3.6460 -0.0112 36 1 8.7077 -2.8266 -0.4462 37 1 9.2366 -3.4499 1.1454 38 1 10.2965 -4.1954 -1.6366 39 1 11.2297 -3.7623 -0.1649 40 1 10.7102 -5.8497 0.9176 41 1 10.8407 -6.3857 -0.7897 42 1 7.3624 -7.0982 1.1388 43 1 8.7926 -6.4959 2.0106 44 1 9.5785 -8.4725 0.1183 45 1 10.3405 -10.0536 -0.0319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569540904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:15 Heat of formation + Delta-G solvation = 141.763319 kcal Electronic energy + Delta-G solvation = -29128.160036 eV Core-core repulsion = 24959.231710 eV Total energy + Delta-G solvation = -4168.928326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.27684 -41.62809 -40.06378 -37.49291 -34.82190 -34.65067 -34.07895 -32.14571 -31.40202 -31.28592 -30.62882 -28.52868 -27.27001 -25.55604 -24.55591 -23.61546 -22.97174 -22.25539 -21.70632 -21.32377 -20.47072 -18.96733 -18.06822 -18.04843 -17.33467 -17.05251 -16.67137 -16.27460 -15.99011 -15.33896 -14.96230 -14.42339 -14.31934 -14.28685 -14.08644 -13.66166 -13.62262 -13.41812 -13.32293 -13.19760 -13.06907 -12.99966 -12.66814 -12.19256 -11.95568 -11.63876 -11.29215 -10.99878 -10.86931 -10.77693 -10.69808 -10.56984 -10.52656 -10.48075 -10.07642 -9.91579 -9.46723 -9.15327 -8.95038 -8.78630 -8.54037 -6.91648 -6.02889 -3.01620 0.49329 1.18122 1.54229 1.65601 2.57416 2.59114 2.78241 3.14877 3.57353 3.61832 3.71371 3.78745 3.97764 4.03765 4.33525 4.59041 4.61962 4.63309 4.69198 4.75751 4.76411 4.87521 4.97656 5.06451 5.09328 5.22116 5.37350 5.40982 5.49764 5.63852 5.66301 5.70596 5.79883 5.88958 5.89859 5.93975 6.02878 6.10630 6.35205 6.38148 6.46075 6.76552 6.97301 6.99438 7.47433 7.69969 7.89029 8.10614 8.83243 9.30390 10.16509 10.31740 11.45865 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.002073 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.278407 B =13501.440602 C =14773.672424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.365 5.365 3 C 0.058 3.942 4 C -0.245 4.245 5 C 0.139 3.861 6 C 0.037 3.963 7 C -0.139 4.139 8 C -0.011 4.011 9 C 0.606 3.394 10 O -0.507 6.507 11 N -0.596 5.596 12 C 0.095 3.905 13 C -0.134 4.134 14 C -0.120 4.120 15 C 0.130 3.870 16 H 0.078 0.922 17 C 0.150 3.850 18 N -0.739 5.739 19 C -0.325 4.325 20 H 0.063 0.937 21 C -0.047 4.047 22 N -0.945 5.945 23 Si 1.081 2.919 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.295 1.295 27 N -0.321 5.321 28 O 0.134 5.866 29 N -0.258 5.258 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.183 0.817 34 H 0.159 0.841 35 H 0.187 0.813 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.036 0.964 43 H 0.023 0.977 44 H 0.366 0.634 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.043 31.276 -4.052 34.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.148 5.148 3 C -0.087 4.087 4 C -0.274 4.274 5 C -0.025 4.025 6 C -0.028 4.028 7 C -0.163 4.163 8 C -0.169 4.169 9 C 0.391 3.609 10 O -0.380 6.380 11 N -0.331 5.331 12 C -0.028 4.028 13 C -0.172 4.172 14 C -0.158 4.158 15 C 0.028 3.972 16 H 0.096 0.904 17 C 0.022 3.978 18 N -0.385 5.385 19 C -0.456 4.456 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.591 5.591 23 Si 0.912 3.088 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.223 1.223 27 N -0.022 5.022 28 O 0.057 5.943 29 N -0.084 5.084 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.200 0.800 34 H 0.177 0.823 35 H 0.204 0.796 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.054 0.946 43 H 0.041 0.959 44 H 0.199 0.801 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.822 28.516 -3.381 32.315 hybrid contribution -0.637 2.005 -0.604 2.189 sum -15.459 30.521 -3.986 34.444 Atomic orbital electron populations 1.21991 0.73243 1.05032 1.03952 1.48566 1.06973 1.03319 1.55978 1.22557 0.90712 0.93713 1.01711 1.21562 0.97777 0.93180 1.14872 1.18788 0.88744 0.91722 1.03291 1.20743 0.84274 0.91430 1.06331 1.22673 0.96767 0.93735 1.03148 1.23392 0.92487 0.94016 1.07009 1.16436 0.81057 0.85421 0.78001 1.90869 1.59855 1.38001 1.49305 1.48311 1.04160 1.09435 1.71157 1.22566 0.88461 0.90338 1.01401 1.22807 0.96977 0.96539 1.00834 1.22680 0.94309 0.95402 1.03433 1.21921 0.91200 0.83492 1.00593 0.90391 1.20928 0.97233 0.86150 0.93526 1.42193 1.64241 1.11814 1.20257 1.20015 1.31849 0.96271 0.97474 0.91864 1.25769 0.98109 0.97702 1.02841 1.70882 1.44284 1.37054 1.06920 0.83227 0.75694 0.75966 0.73917 1.21042 1.22334 1.22290 1.74229 1.16168 0.95603 1.16171 1.84875 1.12739 1.30553 1.66089 1.77716 0.99836 1.07410 1.23478 0.90186 0.88930 0.88826 0.80031 0.82303 0.79561 0.89170 0.91148 0.90745 0.89730 0.89735 0.89771 0.94574 0.95945 0.80071 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.25 11.46 59.85 0.69 0.94 16 2 N -0.36 -2.49 4.01 -68.20 -0.27 -2.77 16 3 C 0.06 0.30 11.46 -17.27 -0.20 0.10 16 4 C -0.24 -1.78 10.77 -39.67 -0.43 -2.21 16 5 C 0.14 1.42 7.11 -82.88 -0.59 0.83 16 6 C 0.04 0.42 7.35 -36.19 -0.27 0.16 16 7 C -0.14 -1.82 10.94 -38.73 -0.42 -2.24 16 8 C -0.01 -0.16 7.01 -82.63 -0.58 -0.74 16 9 C 0.61 10.82 7.69 -12.10 -0.09 10.72 16 10 O -0.51 -10.82 15.75 5.37 0.08 -10.74 16 11 N -0.60 -9.95 3.06 -163.94 -0.50 -10.45 16 12 C 0.10 1.25 6.34 -2.53 -0.02 1.23 16 13 C -0.13 -1.58 7.08 -24.59 -0.17 -1.75 16 14 C -0.12 -1.85 6.18 -24.90 -0.15 -2.01 16 15 C 0.13 2.41 2.96 -66.95 -0.20 2.21 16 16 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 17 C 0.15 3.46 5.64 -4.04 -0.02 3.44 16 18 N -0.74 -19.88 5.40 -59.91 -0.32 -20.20 16 19 C -0.32 -9.75 9.99 -15.06 -0.15 -9.90 16 20 H 0.06 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.05 -1.43 5.50 -17.43 -0.10 -1.53 16 22 N -0.95 -30.11 13.70 55.49 0.76 -29.35 16 23 Si 1.08 27.08 29.92 -169.99 -5.09 22.00 16 24 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 27 N -0.32 -4.18 9.19 33.35 0.31 -3.88 16 28 O 0.13 1.52 11.20 16.05 0.18 1.70 16 29 N -0.26 -2.71 12.60 33.36 0.42 -2.29 16 30 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.18 0.17 8.06 -52.49 -0.42 -0.25 16 34 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.19 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.09 1.10 5.96 -51.93 -0.31 0.79 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.40 7.78 -51.93 -0.40 1.00 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.04 0.93 6.58 -51.93 -0.34 0.59 16 43 H 0.02 0.53 8.04 -51.93 -0.42 0.11 16 44 H 0.37 9.83 6.41 -40.82 -0.26 9.57 16 45 H 0.25 7.93 6.77 -40.82 -0.28 7.65 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -38.29 382.33 -7.24 -45.54 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.87 Total: 5.42 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.70 Total: -0.74 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: 0.39 Total: -68.94 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.26 Total: -9.04 kcal Atomic # 14 Polarization: 27.08 SS G_CDS: -5.09 Total: 22.00 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.29 -7.24 -45.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569540904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.299 kcal (2) G-P(sol) polarization free energy of solvation -38.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds