Wall clock time and date at job start Wed Apr 1 2020 03:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35082 * 125.91240 * 2 1 4 4 C 1.35013 * 108.03327 * 179.74715 * 3 2 1 5 5 C 1.41043 * 107.84054 * 0.39947 * 4 3 2 6 6 C 1.47856 * 126.06263 * 179.85654 * 5 4 3 7 7 C 1.36735 * 126.81742 * 180.02562 * 6 5 4 8 8 C 1.41889 * 103.81578 * 180.10496 * 7 6 5 9 9 C 1.48349 * 126.84001 * 179.89543 * 8 7 6 10 10 O 1.21493 * 119.99995 * 359.71022 * 9 8 7 11 11 N 1.34780 * 120.00095 * 179.70325 * 9 8 7 12 12 C 1.47426 * 125.64293 * 4.79425 * 11 9 8 13 13 C 1.54907 * 104.82665 * 204.15977 * 12 11 9 14 14 C 1.55150 * 101.58578 * 322.99340 * 13 12 11 15 15 C 1.47017 * 125.64800 * 184.83471 * 11 9 8 16 16 H 1.08995 * 109.88261 * 59.33725 * 15 11 9 17 17 C 1.53001 * 109.88099 * 298.32048 * 15 11 9 18 18 N 1.46502 * 109.46829 * 175.91744 * 17 15 11 19 19 C 1.36937 * 120.00078 * 174.94595 * 18 17 15 20 20 H 1.08004 * 120.00020 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00359 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99941 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47209 * 180.02562 * 23 21 19 25 25 H 1.48498 * 109.46733 * 300.00066 * 23 21 19 26 26 H 1.48499 * 109.46980 * 59.99899 * 23 21 19 27 27 N 1.31091 * 106.31773 * 359.62665 * 8 7 6 28 28 O 1.20878 * 111.76947 * 0.24475 * 27 8 7 29 29 N 1.31812 * 107.86809 * 359.59925 * 5 4 3 30 30 H 1.08999 * 109.46937 * 269.97495 * 1 2 3 31 31 H 1.08998 * 109.47063 * 29.96820 * 1 2 3 32 32 H 1.09003 * 109.47390 * 149.96866 * 1 2 3 33 33 H 1.08001 * 125.98303 * 0.02562 * 3 2 1 34 34 H 1.07997 * 126.07868 * 180.27314 * 4 3 2 35 35 H 1.07997 * 128.08927 * 359.97360 * 7 6 5 36 36 H 1.08993 * 110.37142 * 323.00116 * 12 11 9 37 37 H 1.09000 * 110.36577 * 85.21541 * 12 11 9 38 38 H 1.09005 * 111.00855 * 81.06946 * 13 12 11 39 39 H 1.09001 * 111.00312 * 204.91714 * 13 12 11 40 40 H 1.09005 * 110.72179 * 277.13887 * 14 13 12 41 41 H 1.09001 * 110.72257 * 153.87012 * 14 13 12 42 42 H 1.08996 * 109.46861 * 55.92270 * 17 15 11 43 43 H 1.08996 * 109.47397 * 295.91711 * 17 15 11 44 44 H 0.96995 * 120.00323 * 354.93895 * 18 17 15 45 45 H 0.96994 * 119.99935 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2573 1.0941 0.0000 4 6 3.5423 0.6796 0.0057 5 6 3.5413 -0.7309 0.0000 6 6 4.7360 -1.6020 0.0003 7 6 4.7531 -2.9693 -0.0057 8 6 6.1351 -3.2908 0.0002 9 6 6.7323 -4.6488 -0.0005 10 8 6.0138 -5.6284 -0.0013 11 7 8.0721 -4.7957 -0.0004 12 6 9.0562 -3.7027 0.1005 13 6 10.3438 -4.2672 -0.5500 14 6 10.3027 -5.7479 -0.0883 15 6 8.7940 -6.0724 -0.1017 16 1 8.5290 -6.5754 -1.0316 17 6 8.4431 -6.9646 1.0907 18 7 9.0899 -8.2695 0.9312 19 6 9.0044 -9.2026 1.9297 20 1 8.4598 -8.9769 2.8347 21 6 9.6166 -10.4391 1.7785 22 7 10.2799 -10.7145 0.6754 23 14 9.4994 -11.7124 3.1403 24 1 10.2327 -12.9387 2.7359 25 1 10.0996 -11.1644 4.3832 26 1 8.0731 -12.0458 3.3847 27 7 6.7790 -2.1489 0.0005 28 8 6.0213 -1.2071 0.0006 29 7 2.2865 -1.1345 -0.0001 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3634 -0.8897 -0.5143 33 1 1.9217 2.1206 0.0004 34 1 4.4155 1.3150 0.0113 35 1 3.9116 -3.6460 -0.0112 36 1 8.7077 -2.8266 -0.4462 37 1 9.2366 -3.4499 1.1454 38 1 10.2965 -4.1954 -1.6366 39 1 11.2297 -3.7623 -0.1649 40 1 10.7102 -5.8497 0.9176 41 1 10.8407 -6.3857 -0.7897 42 1 7.3624 -7.0982 1.1388 43 1 8.7926 -6.4959 2.0106 44 1 9.5785 -8.4725 0.1183 45 1 10.3405 -10.0536 -0.0319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569540904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:14 Heat of formation + Delta-G solvation = 114.964171 kcal Electronic energy + Delta-G solvation = -29129.322134 eV Core-core repulsion = 24959.231710 eV Total energy + Delta-G solvation = -4170.090424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.31891 -42.15638 -41.46283 -38.93549 -36.84395 -35.49312 -35.06207 -33.54772 -32.91598 -32.38099 -31.18734 -30.26504 -27.74519 -26.85115 -26.36407 -24.77125 -24.46118 -23.66444 -22.65918 -21.85617 -21.74769 -20.22311 -19.38208 -19.10023 -18.84502 -18.31665 -17.71369 -17.39572 -16.97612 -16.43424 -16.07123 -15.85621 -15.76109 -15.66739 -15.21990 -15.12530 -15.02757 -14.66596 -14.41120 -14.01464 -13.81629 -13.75701 -13.70170 -13.29045 -13.25939 -13.03030 -12.77911 -12.63676 -12.11693 -12.07078 -11.90091 -11.87357 -11.82579 -11.74755 -11.58859 -11.55909 -11.35878 -10.97894 -10.12008 -9.98263 -9.54657 -9.19832 -8.46707 -5.40892 -0.41726 0.07217 1.02313 1.04116 1.41391 1.55152 1.65684 1.77156 1.82885 1.92901 1.96425 2.53598 2.67668 3.09440 3.32771 3.45709 3.49631 3.56519 3.64394 3.73233 3.80123 3.89953 4.06242 4.12114 4.14447 4.15878 4.35038 4.46578 4.58429 4.59284 4.61170 4.72740 4.73329 4.74921 4.77549 4.87571 4.91472 4.95727 5.00025 5.18571 5.24019 5.35458 5.49605 6.03639 6.13519 6.41432 6.43718 6.59934 6.79627 7.01122 7.89477 8.02323 9.05156 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.002073 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.278407 B =13501.440602 C =14773.672424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.362 5.362 3 C 0.076 3.924 4 C -0.257 4.257 5 C 0.110 3.890 6 C 0.060 3.940 7 C -0.158 4.158 8 C -0.028 4.028 9 C 0.600 3.400 10 O -0.556 6.556 11 N -0.596 5.596 12 C 0.092 3.908 13 C -0.115 4.115 14 C -0.116 4.116 15 C 0.137 3.863 16 H 0.063 0.937 17 C 0.157 3.843 18 N -0.745 5.745 19 C -0.341 4.341 20 H 0.058 0.942 21 C -0.099 4.099 22 N -0.967 5.967 23 Si 1.131 2.869 24 H -0.286 1.286 25 H -0.274 1.274 26 H -0.282 1.282 27 N -0.317 5.317 28 O 0.156 5.844 29 N -0.302 5.302 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.231 0.769 34 H 0.177 0.823 35 H 0.182 0.818 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.005 0.995 43 H 0.019 0.981 44 H 0.365 0.635 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.370 34.798 -3.778 38.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.146 5.146 3 C -0.070 4.070 4 C -0.286 4.286 5 C -0.053 4.053 6 C -0.005 4.005 7 C -0.183 4.183 8 C -0.185 4.185 9 C 0.387 3.613 10 O -0.433 6.433 11 N -0.329 5.329 12 C -0.030 4.030 13 C -0.153 4.153 14 C -0.154 4.154 15 C 0.033 3.967 16 H 0.081 0.919 17 C 0.029 3.971 18 N -0.391 5.391 19 C -0.472 4.472 20 H 0.076 0.924 21 C -0.290 4.290 22 N -0.614 5.614 23 Si 0.954 3.046 24 H -0.211 1.211 25 H -0.200 1.200 26 H -0.209 1.209 27 N -0.014 5.014 28 O 0.076 5.924 29 N -0.131 5.131 30 H 0.109 0.891 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.248 0.752 34 H 0.195 0.805 35 H 0.200 0.800 36 H 0.122 0.878 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.022 0.978 43 H 0.037 0.963 44 H 0.197 0.803 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.121 32.082 -3.112 35.603 hybrid contribution -0.718 1.084 -0.695 1.475 sum -15.839 33.166 -3.807 36.951 Atomic orbital electron populations 1.22375 0.71035 1.06547 1.05158 1.48978 1.08261 1.02897 1.54457 1.23318 0.89704 0.95119 0.98836 1.21906 0.99629 0.91830 1.15265 1.18865 0.88152 0.92967 1.05282 1.20889 0.84547 0.90933 1.04087 1.22650 0.96083 0.94736 1.04817 1.22955 0.93145 0.93043 1.09311 1.16877 0.81195 0.86183 0.77017 1.90830 1.61049 1.39861 1.51544 1.48432 1.04417 1.09720 1.70356 1.22829 0.88157 0.89637 1.02333 1.22824 0.97381 0.93390 1.01711 1.22608 0.91298 0.98376 1.03083 1.21709 0.93760 0.83768 0.97453 0.91910 1.20870 0.94881 0.85625 0.95678 1.42277 1.64341 1.12809 1.19655 1.20318 1.31656 0.97268 0.97953 0.92410 1.27311 0.97469 0.99905 1.04327 1.70988 1.45716 1.37135 1.07604 0.82611 0.76431 0.73523 0.72012 1.21133 1.20032 1.20879 1.74174 1.16272 0.95101 1.15846 1.84851 1.12804 1.29693 1.65057 1.77634 1.00507 1.09970 1.24947 0.89101 0.85253 0.89527 0.75223 0.80520 0.80050 0.87765 0.90467 0.89295 0.86458 0.90911 0.89484 0.97751 0.96270 0.80274 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.23 11.46 127.77 1.46 1.70 16 2 N -0.36 -4.15 4.01 -369.70 -1.48 -5.63 16 3 C 0.08 0.52 11.46 83.45 0.96 1.48 16 4 C -0.26 -3.12 10.77 22.22 0.24 -2.88 16 5 C 0.11 2.16 7.11 42.38 0.30 2.46 16 6 C 0.06 1.37 7.35 24.47 0.18 1.55 16 7 C -0.16 -4.36 10.94 22.82 0.25 -4.11 16 8 C -0.03 -0.86 7.01 42.85 0.30 -0.55 16 9 C 0.60 22.59 7.69 86.94 0.67 23.26 16 10 O -0.56 -25.61 15.75 -3.69 -0.06 -25.67 16 11 N -0.60 -20.37 3.06 -790.88 -2.42 -22.79 16 12 C 0.09 2.27 6.34 86.85 0.55 2.82 16 13 C -0.12 -2.44 7.08 31.98 0.23 -2.21 16 14 C -0.12 -3.51 6.18 31.78 0.20 -3.32 16 15 C 0.14 5.23 2.96 45.34 0.13 5.37 16 16 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 17 C 0.16 7.64 5.64 86.38 0.49 8.13 16 18 N -0.75 -41.69 5.40 -343.46 -1.85 -43.55 16 19 C -0.34 -20.95 9.99 84.03 0.84 -20.11 16 20 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 21 C -0.10 -6.04 5.50 84.86 0.47 -5.58 16 22 N -0.97 -62.53 13.70 21.65 0.30 -62.24 16 23 Si 1.13 54.66 29.92 68.60 2.05 56.71 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 27 N -0.32 -8.04 9.19 -48.99 -0.45 -8.49 16 28 O 0.16 3.37 11.20 67.62 0.76 4.13 16 29 N -0.30 -6.26 12.60 -48.36 -0.61 -6.86 16 30 H 0.09 0.07 8.14 -2.39 -0.02 0.06 16 31 H 0.13 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.23 -0.86 8.06 -2.91 -0.02 -0.88 16 34 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.18 5.05 8.06 -2.91 -0.02 5.03 16 36 H 0.10 2.34 5.96 -2.39 -0.01 2.33 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 38 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 2.40 7.78 -2.38 -0.02 2.38 16 41 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.00 0.25 6.58 -2.39 -0.02 0.24 16 43 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 44 H 0.36 20.39 6.41 -92.71 -0.59 19.79 16 45 H 0.24 15.72 6.77 -92.71 -0.63 15.10 16 Total: -1.00 -87.39 382.33 4.07 -83.31 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.58 Total: 23.07 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 7.26 Total: 8.02 kcal Atomic # 7 Polarization: -143.05 SS G_CDS: -6.52 Total: -149.57 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.70 Total: -21.54 kcal Atomic # 14 Polarization: 54.66 SS G_CDS: 2.05 Total: 56.71 kcal Total: -87.39 4.07 -83.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569540904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.278 kcal (2) G-P(sol) polarization free energy of solvation -87.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds