Wall clock time and date at job start Wed Apr 1 2020 03:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.39795 * 125.34057 * 2 1 4 4 C 1.30193 * 110.13487 * 179.97438 * 3 2 1 5 5 C 1.45978 * 107.58596 * 0.02562 * 4 3 2 6 6 C 1.39656 * 134.12369 * 180.02562 * 5 4 3 7 7 C 1.39503 * 117.95206 * 179.97438 * 6 5 4 8 8 C 1.47689 * 120.40999 * 179.97438 * 7 6 5 9 9 O 1.21572 * 119.99922 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99859 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99504 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46567 * 180.02562 * 11 10 8 13 13 O 1.42899 * 110.89074 * 303.88149 * 12 11 10 14 14 C 1.55157 * 111.00339 * 180.02562 * 12 11 10 15 15 C 1.54326 * 102.94369 * 206.38768 * 14 12 11 16 16 N 1.47018 * 107.27077 * 22.19167 * 15 14 12 17 17 C 1.36933 * 125.64791 * 181.02164 * 16 15 14 18 18 H 1.08003 * 120.00191 * 169.69505 * 17 16 15 19 19 C 1.38815 * 120.00279 * 349.70283 * 17 16 15 20 20 N 1.31618 * 119.99973 * 152.99416 * 19 17 16 21 21 Si 1.86804 * 119.99596 * 332.99374 * 19 17 16 22 22 H 1.48502 * 109.47022 * 85.20223 * 21 19 17 23 23 H 1.48492 * 109.46735 * 205.20234 * 21 19 17 24 24 H 1.48498 * 109.47060 * 325.20175 * 21 19 17 25 25 C 1.47432 * 108.70453 * 1.28826 * 16 15 14 26 26 C 1.40189 * 119.17966 * 0.25049 * 7 6 5 27 27 N 1.31186 * 121.37285 * 359.49827 * 26 7 6 28 28 C 1.32928 * 121.84429 * 0.48258 * 27 26 7 29 29 H 1.08997 * 109.46766 * 90.02898 * 1 2 3 30 30 H 1.09002 * 109.47089 * 210.02715 * 1 2 3 31 31 H 1.08997 * 109.47332 * 330.02641 * 1 2 3 32 32 H 1.08000 * 126.20895 * 179.97438 * 4 3 2 33 33 H 1.07995 * 121.02066 * 359.93029 * 6 5 4 34 34 H 0.96993 * 119.99696 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47312 * 60.00362 * 11 10 8 36 36 H 1.08998 * 109.47316 * 299.99960 * 11 10 8 37 37 H 0.96704 * 113.99845 * 56.11485 * 13 12 11 38 38 H 1.08996 * 110.71868 * 88.02316 * 14 12 11 39 39 H 1.09000 * 110.87135 * 324.81930 * 14 12 11 40 40 H 1.08994 * 109.88143 * 262.77454 * 15 14 12 41 41 H 1.09004 * 109.88181 * 141.60811 * 15 14 12 42 42 H 0.96998 * 120.00029 * 5.04598 * 20 19 17 43 43 H 1.08998 * 110.36548 * 94.48169 * 25 16 15 44 44 H 1.08998 * 110.36594 * 216.80377 * 25 16 15 45 45 H 1.08000 * 119.30868 * 179.72685 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5301 0.7989 0.0005 5 6 3.5907 -0.6597 0.0003 6 6 4.6327 -1.5895 0.0011 7 6 4.3001 -2.9443 0.0011 8 6 5.3589 -3.9739 0.0013 9 8 6.5287 -3.6429 0.0020 10 7 5.0282 -5.2805 0.0018 11 6 6.0786 -6.3018 0.0015 12 6 5.4384 -7.6915 0.0016 13 8 4.5495 -7.8431 1.1101 14 6 6.5214 -8.8026 0.0019 15 6 5.7979 -9.9907 -0.6666 16 7 4.6911 -9.4371 -1.4603 17 6 3.7925 -10.1652 -2.1934 18 1 2.9181 -9.6851 -2.6072 19 6 4.0053 -11.5206 -2.4045 20 7 2.9827 -12.3229 -2.6115 21 14 5.7431 -12.2058 -2.3947 22 1 6.1477 -12.5093 -0.9985 23 1 5.7894 -13.4494 -3.2049 24 1 6.6737 -11.2034 -2.9729 25 6 4.7129 -7.9677 -1.3415 26 6 2.9485 -3.3163 -0.0051 27 7 1.9928 -2.4176 -0.0010 28 6 2.2554 -1.1146 -0.0004 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5134 32 1 4.3743 1.4724 0.0003 33 1 5.6642 -1.2695 0.0010 34 1 4.0949 -5.5445 0.0017 35 1 6.6977 -6.1866 0.8912 36 1 6.6968 -6.1870 -0.8888 37 1 3.8554 -7.1711 1.1523 38 1 6.8155 -9.0541 1.0208 39 1 7.3887 -8.4998 -0.5848 40 1 5.4066 -10.6633 0.0966 41 1 6.4888 -10.5268 -1.3173 42 1 2.0876 -11.9575 -2.6895 43 1 5.2659 -7.5282 -2.1715 44 1 3.6967 -7.5745 -1.3111 45 1 2.6887 -4.3646 -0.0096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569763248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:34 Heat of formation + Delta-G solvation = 63.502139 kcal Electronic energy + Delta-G solvation = -29539.936080 eV Core-core repulsion = 25367.614095 eV Total energy + Delta-G solvation = -4172.321986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.08559 -40.25805 -38.91271 -38.04030 -35.49635 -34.42454 -34.26044 -32.42889 -32.15884 -31.03004 -29.91262 -28.67464 -27.40086 -26.03794 -24.41704 -24.15028 -22.95350 -21.42609 -21.19469 -20.59075 -20.20098 -18.62510 -18.18787 -17.53204 -17.27384 -16.42379 -16.35093 -16.09505 -15.62310 -15.42007 -15.12443 -14.69817 -14.60232 -14.16372 -14.00058 -13.86932 -13.63036 -13.59100 -13.48254 -13.14108 -13.00937 -12.97786 -12.72673 -12.28276 -11.86128 -11.63161 -11.37190 -11.21859 -10.96752 -10.93474 -10.82322 -10.50605 -10.26598 -9.85740 -9.84528 -9.58097 -9.54375 -9.33280 -9.16911 -8.78561 -8.42539 -7.11094 -6.34136 -3.19047 0.26536 0.35929 1.61574 1.92077 2.54651 2.81057 3.41163 3.43285 3.51185 3.57787 3.69207 3.75279 4.06325 4.23495 4.29534 4.33670 4.51003 4.59932 4.60339 4.77861 4.80316 4.87428 4.90054 5.02015 5.07768 5.09255 5.17494 5.41725 5.49486 5.59199 5.66669 5.67758 5.80203 5.89301 5.99533 6.09868 6.12785 6.22587 6.27198 6.32183 6.55566 6.79918 6.87716 7.16195 7.33803 7.64957 7.76440 7.92367 8.32385 9.02132 9.57786 10.23759 11.14437 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.002263 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.675908 B =12369.920412 C =13359.038461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.392 5.392 3 N -0.240 5.240 4 C 0.097 3.903 5 C -0.240 4.240 6 C 0.075 3.925 7 C -0.234 4.234 8 C 0.574 3.426 9 O -0.536 6.536 10 N -0.722 5.722 11 C 0.105 3.895 12 C 0.101 3.899 13 O -0.534 6.534 14 C -0.112 4.112 15 C 0.120 3.880 16 N -0.602 5.602 17 C -0.332 4.332 18 H 0.075 0.925 19 C -0.019 4.019 20 N -0.917 5.917 21 Si 1.069 2.931 22 H -0.292 1.292 23 H -0.300 1.300 24 H -0.293 1.293 25 C 0.115 3.885 26 C 0.207 3.793 27 N -0.502 5.502 28 C 0.330 3.670 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.207 0.793 33 H 0.156 0.844 34 H 0.397 0.603 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.365 0.635 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.029 0.971 42 H 0.263 0.737 43 H 0.031 0.969 44 H 0.044 0.956 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 26.219 7.695 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.181 5.181 3 N -0.051 5.051 4 C -0.102 4.102 5 C -0.250 4.250 6 C 0.046 3.954 7 C -0.241 4.241 8 C 0.360 3.640 9 O -0.414 6.414 10 N -0.375 5.375 11 C -0.019 4.019 12 C 0.059 3.941 13 O -0.339 6.339 14 C -0.151 4.151 15 C -0.005 4.005 16 N -0.329 5.329 17 C -0.459 4.459 18 H 0.093 0.907 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.903 3.097 22 H -0.220 1.220 23 H -0.228 1.228 24 H -0.221 1.221 25 C -0.011 4.011 26 C 0.036 3.964 27 N -0.216 5.216 28 C 0.091 3.909 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.223 0.777 33 H 0.174 0.826 34 H 0.233 0.767 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.211 0.789 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.900 25.278 7.645 26.424 hybrid contribution -0.480 1.386 -0.168 1.476 sum 0.420 26.663 7.477 27.695 Atomic orbital electron populations 1.21895 0.72960 1.04713 1.03619 1.48177 1.06576 0.99996 1.63368 1.76761 1.02744 1.07338 1.18307 1.25165 0.94927 0.92483 0.97602 1.20474 0.93995 0.94880 1.15614 1.21166 0.99383 0.89918 0.84889 1.20627 0.94810 0.94531 1.14157 1.17751 0.87993 0.81981 0.76235 1.90793 1.19134 1.81445 1.50034 1.45831 1.10527 1.05632 1.75490 1.22049 0.90315 0.85980 1.03558 1.22736 0.91325 0.92116 0.87912 1.86650 1.44287 1.55672 1.47261 1.22561 0.96065 0.94594 1.01844 1.21643 0.90054 0.94806 0.94022 1.44652 1.33577 0.99666 1.55028 1.19973 1.00977 0.93160 1.31747 0.90697 1.25795 1.05266 0.91893 0.99020 1.70925 0.99470 1.34997 1.50326 0.83717 0.75423 0.74470 0.76125 1.22006 1.22763 1.22117 1.22215 0.97883 0.87793 0.93252 1.22883 0.86812 0.98397 0.88304 1.66680 1.37293 0.98508 1.19123 1.19151 0.88714 0.88180 0.94869 0.90774 0.88884 0.89197 0.77682 0.82639 0.76738 0.90241 0.89890 0.78871 0.90009 0.89879 0.93659 0.95341 0.92707 0.95115 0.93749 0.81409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.67 11.43 59.85 0.68 1.35 16 2 N -0.39 -3.72 4.03 -67.17 -0.27 -3.99 16 3 N -0.24 -2.21 12.39 31.87 0.39 -1.81 16 4 C 0.10 0.71 12.30 -15.15 -0.19 0.53 16 5 C -0.24 -2.21 6.36 -105.20 -0.67 -2.88 16 6 C 0.08 0.68 9.76 -38.58 -0.38 0.30 16 7 C -0.23 -2.27 5.89 -104.83 -0.62 -2.88 16 8 C 0.57 6.54 7.77 -12.40 -0.10 6.44 16 9 O -0.54 -7.78 16.40 5.30 0.09 -7.69 16 10 N -0.72 -7.42 5.15 -61.30 -0.32 -7.73 16 11 C 0.10 1.27 4.89 -4.04 -0.02 1.25 16 12 C 0.10 1.51 0.97 -88.35 -0.09 1.42 16 13 O -0.53 -8.03 13.21 -35.23 -0.47 -8.49 16 14 C -0.11 -1.82 6.15 -24.89 -0.15 -1.97 16 15 C 0.12 2.59 4.94 -3.06 -0.02 2.58 16 16 N -0.60 -14.46 3.29 -169.93 -0.56 -15.02 16 17 C -0.33 -9.40 10.43 -15.06 -0.16 -9.56 16 18 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 19 C -0.02 -0.55 5.43 -17.43 -0.09 -0.65 16 20 N -0.92 -28.65 13.70 55.49 0.76 -27.89 16 21 Si 1.07 26.85 24.66 -169.99 -4.19 22.66 16 22 H -0.29 -6.94 6.76 56.52 0.38 -6.56 16 23 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 24 H -0.29 -6.99 6.71 56.52 0.38 -6.61 16 25 C 0.12 2.13 6.23 -2.40 -0.01 2.11 16 26 C 0.21 1.87 10.69 -17.10 -0.18 1.69 16 27 N -0.50 -5.30 10.37 -12.03 -0.12 -5.43 16 28 C 0.33 3.49 7.96 -156.09 -1.24 2.24 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.21 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.16 1.18 7.72 -52.49 -0.41 0.78 16 34 H 0.40 3.24 5.32 -40.82 -0.22 3.03 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 37 H 0.36 3.94 7.69 45.56 0.35 4.29 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 40 H 0.05 1.06 7.82 -51.93 -0.41 0.66 16 41 H 0.03 0.65 3.76 -51.93 -0.20 0.46 16 42 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 43 H 0.03 0.57 7.99 -51.93 -0.41 0.15 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.17 1.06 6.39 -52.49 -0.34 0.72 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -37.93 371.47 -7.35 -45.28 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.04 Total: 2.55 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -3.23 Total: 1.97 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.11 Total: -61.87 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.38 Total: -16.18 kcal Atomic # 14 Polarization: 26.85 SS G_CDS: -4.19 Total: 22.66 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.93 -7.35 -45.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569763248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.785 kcal (2) G-P(sol) polarization free energy of solvation -37.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds