Wall clock time and date at job start Wed Apr 1 2020 03:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.39795 * 125.34057 * 2 1 4 4 C 1.30193 * 110.13487 * 179.97438 * 3 2 1 5 5 C 1.45978 * 107.58596 * 0.02562 * 4 3 2 6 6 C 1.39656 * 134.12369 * 180.02562 * 5 4 3 7 7 C 1.39503 * 117.95206 * 179.97438 * 6 5 4 8 8 C 1.47689 * 120.40999 * 179.97438 * 7 6 5 9 9 O 1.21572 * 119.99922 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99859 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99504 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46567 * 180.02562 * 11 10 8 13 13 O 1.42899 * 110.89074 * 303.88149 * 12 11 10 14 14 C 1.55157 * 111.00339 * 180.02562 * 12 11 10 15 15 C 1.54326 * 102.94369 * 206.38768 * 14 12 11 16 16 N 1.47018 * 107.27077 * 22.19167 * 15 14 12 17 17 C 1.36933 * 125.64791 * 181.02164 * 16 15 14 18 18 H 1.08003 * 120.00191 * 169.69505 * 17 16 15 19 19 C 1.38815 * 120.00279 * 349.70283 * 17 16 15 20 20 N 1.31618 * 119.99973 * 152.99416 * 19 17 16 21 21 Si 1.86804 * 119.99596 * 332.99374 * 19 17 16 22 22 H 1.48502 * 109.47022 * 85.20223 * 21 19 17 23 23 H 1.48492 * 109.46735 * 205.20234 * 21 19 17 24 24 H 1.48498 * 109.47060 * 325.20175 * 21 19 17 25 25 C 1.47432 * 108.70453 * 1.28826 * 16 15 14 26 26 C 1.40189 * 119.17966 * 0.25049 * 7 6 5 27 27 N 1.31186 * 121.37285 * 359.49827 * 26 7 6 28 28 C 1.32928 * 121.84429 * 0.48258 * 27 26 7 29 29 H 1.08997 * 109.46766 * 90.02898 * 1 2 3 30 30 H 1.09002 * 109.47089 * 210.02715 * 1 2 3 31 31 H 1.08997 * 109.47332 * 330.02641 * 1 2 3 32 32 H 1.08000 * 126.20895 * 179.97438 * 4 3 2 33 33 H 1.07995 * 121.02066 * 359.93029 * 6 5 4 34 34 H 0.96993 * 119.99696 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47312 * 60.00362 * 11 10 8 36 36 H 1.08998 * 109.47316 * 299.99960 * 11 10 8 37 37 H 0.96704 * 113.99845 * 56.11485 * 13 12 11 38 38 H 1.08996 * 110.71868 * 88.02316 * 14 12 11 39 39 H 1.09000 * 110.87135 * 324.81930 * 14 12 11 40 40 H 1.08994 * 109.88143 * 262.77454 * 15 14 12 41 41 H 1.09004 * 109.88181 * 141.60811 * 15 14 12 42 42 H 0.96998 * 120.00029 * 5.04598 * 20 19 17 43 43 H 1.08998 * 110.36548 * 94.48169 * 25 16 15 44 44 H 1.08998 * 110.36594 * 216.80377 * 25 16 15 45 45 H 1.08000 * 119.30868 * 179.72685 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5301 0.7989 0.0005 5 6 3.5907 -0.6597 0.0003 6 6 4.6327 -1.5895 0.0011 7 6 4.3001 -2.9443 0.0011 8 6 5.3589 -3.9739 0.0013 9 8 6.5287 -3.6429 0.0020 10 7 5.0282 -5.2805 0.0018 11 6 6.0786 -6.3018 0.0015 12 6 5.4384 -7.6915 0.0016 13 8 4.5495 -7.8431 1.1101 14 6 6.5214 -8.8026 0.0019 15 6 5.7979 -9.9907 -0.6666 16 7 4.6911 -9.4371 -1.4603 17 6 3.7925 -10.1652 -2.1934 18 1 2.9181 -9.6851 -2.6072 19 6 4.0053 -11.5206 -2.4045 20 7 2.9827 -12.3229 -2.6115 21 14 5.7431 -12.2058 -2.3947 22 1 6.1477 -12.5093 -0.9985 23 1 5.7894 -13.4494 -3.2049 24 1 6.6737 -11.2034 -2.9729 25 6 4.7129 -7.9677 -1.3415 26 6 2.9485 -3.3163 -0.0051 27 7 1.9928 -2.4176 -0.0010 28 6 2.2554 -1.1146 -0.0004 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5134 32 1 4.3743 1.4724 0.0003 33 1 5.6642 -1.2695 0.0010 34 1 4.0949 -5.5445 0.0017 35 1 6.6977 -6.1866 0.8912 36 1 6.6968 -6.1870 -0.8888 37 1 3.8554 -7.1711 1.1523 38 1 6.8155 -9.0541 1.0208 39 1 7.3887 -8.4998 -0.5848 40 1 5.4066 -10.6633 0.0966 41 1 6.4888 -10.5268 -1.3173 42 1 2.0876 -11.9575 -2.6895 43 1 5.2659 -7.5282 -2.1715 44 1 3.6967 -7.5745 -1.3111 45 1 2.6887 -4.3646 -0.0096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569763248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:33 Heat of formation + Delta-G solvation = 32.672389 kcal Electronic energy + Delta-G solvation = -29541.272959 eV Core-core repulsion = 25367.614095 eV Total energy + Delta-G solvation = -4173.658864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.74403 -41.20904 -40.09679 -38.83667 -36.98242 -35.38516 -34.93583 -34.36134 -32.88325 -31.98760 -31.30898 -30.00397 -28.12219 -27.33217 -25.41911 -25.03428 -24.17834 -22.67711 -22.04070 -21.74568 -21.46981 -19.63998 -19.36812 -18.82873 -18.17760 -17.53738 -17.02816 -17.00570 -16.90414 -16.37935 -16.22772 -16.12637 -15.48210 -15.27249 -15.17904 -14.97205 -14.76482 -14.59421 -14.39864 -14.34131 -14.16492 -13.55530 -13.47688 -13.38671 -13.31551 -13.10055 -12.86328 -12.66109 -12.27530 -12.19432 -11.87782 -11.64198 -11.61971 -11.39163 -11.21178 -10.93786 -10.61508 -10.54453 -10.30097 -10.20237 -9.45511 -9.14013 -8.62396 -5.40065 -0.38520 -0.36514 1.03316 1.32610 1.41212 1.52227 1.71211 1.72852 1.95123 2.53532 2.67541 2.96429 3.01143 3.12300 3.14692 3.33405 3.46215 3.50098 3.62080 3.68335 3.74117 3.84565 3.92381 4.22058 4.32768 4.34377 4.37383 4.42537 4.45555 4.62057 4.63247 4.72733 4.77130 4.85493 4.86667 4.91942 5.05359 5.08836 5.21334 5.25840 5.31562 5.58781 5.60900 6.12021 6.24829 6.34197 6.66199 6.75238 6.84466 7.06932 7.50220 8.13888 8.86364 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.002263 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.675908 B =12369.920412 C =13359.038461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.401 5.401 3 N -0.263 5.263 4 C 0.110 3.890 5 C -0.251 4.251 6 C 0.081 3.919 7 C -0.243 4.243 8 C 0.580 3.420 9 O -0.568 6.568 10 N -0.715 5.715 11 C 0.118 3.882 12 C 0.121 3.879 13 O -0.550 6.550 14 C -0.107 4.107 15 C 0.109 3.891 16 N -0.625 5.625 17 C -0.317 4.317 18 H 0.047 0.953 19 C -0.079 4.079 20 N -0.955 5.955 21 Si 1.109 2.891 22 H -0.273 1.273 23 H -0.307 1.307 24 H -0.272 1.272 25 C 0.107 3.893 26 C 0.209 3.791 27 N -0.521 5.521 28 C 0.310 3.690 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.246 0.754 33 H 0.169 0.831 34 H 0.407 0.593 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.383 0.617 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.021 0.979 41 H 0.026 0.974 42 H 0.248 0.752 43 H 0.041 0.959 44 H 0.048 0.952 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 28.366 8.740 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.190 5.190 3 N -0.075 5.075 4 C -0.088 4.088 5 C -0.261 4.261 6 C 0.053 3.947 7 C -0.251 4.251 8 C 0.368 3.632 9 O -0.448 6.448 10 N -0.368 5.368 11 C -0.006 4.006 12 C 0.078 3.922 13 O -0.357 6.357 14 C -0.145 4.145 15 C -0.016 4.016 16 N -0.352 5.352 17 C -0.446 4.446 18 H 0.065 0.935 19 C -0.273 4.273 20 N -0.599 5.599 21 Si 0.937 3.063 22 H -0.200 1.200 23 H -0.236 1.236 24 H -0.198 1.198 25 C -0.018 4.018 26 C 0.038 3.962 27 N -0.236 5.236 28 C 0.070 3.930 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.262 0.738 33 H 0.187 0.813 34 H 0.245 0.755 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.232 0.768 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 2.888 27.494 8.715 28.987 hybrid contribution -1.224 0.847 -0.485 1.565 sum 1.664 28.342 8.230 29.559 Atomic orbital electron populations 1.22082 0.71767 1.05551 1.04299 1.48491 1.07510 0.99836 1.63161 1.76755 1.03533 1.07558 1.19620 1.25851 0.95393 0.92136 0.95388 1.20695 0.93527 0.95928 1.15962 1.21349 0.99994 0.89703 0.83687 1.20521 0.94566 0.94466 1.15526 1.17859 0.87748 0.82213 0.75382 1.90780 1.20409 1.81905 1.51715 1.45714 1.10856 1.05157 1.75045 1.21830 0.90316 0.84323 1.04157 1.22466 0.90510 0.93439 0.85742 1.86621 1.45135 1.57036 1.46919 1.22615 0.96570 0.92495 1.02829 1.21777 0.89545 0.96952 0.93305 1.44748 1.33595 1.02164 1.54687 1.19904 1.00710 0.93510 1.30489 0.93542 1.27007 1.07801 0.92982 0.99553 1.71036 0.99328 1.35654 1.53836 0.83206 0.71886 0.74058 0.77123 1.19973 1.23617 1.19835 1.22493 0.98972 0.84528 0.95836 1.23223 0.86451 0.99218 0.87305 1.66714 1.37894 0.98867 1.20114 1.19501 0.89780 0.88517 0.95225 0.90160 0.88719 0.87718 0.73792 0.81328 0.75523 0.89266 0.89704 0.76787 0.88071 0.87051 0.96093 0.95656 0.94233 0.94174 0.93354 0.79272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 11.43 127.77 1.46 2.66 16 2 N -0.40 -7.26 4.03 -366.42 -1.48 -8.74 16 3 N -0.26 -4.47 12.39 -53.08 -0.66 -5.12 16 4 C 0.11 1.39 12.30 86.94 1.07 2.45 16 5 C -0.25 -4.22 6.36 -20.24 -0.13 -4.35 16 6 C 0.08 1.31 9.76 22.92 0.22 1.53 16 7 C -0.24 -4.26 5.89 -20.00 -0.12 -4.38 16 8 C 0.58 11.83 7.77 86.74 0.67 12.50 16 9 O -0.57 -15.15 16.40 -3.94 -0.06 -15.22 16 10 N -0.71 -12.60 5.15 -466.11 -2.40 -15.00 16 11 C 0.12 2.43 4.89 86.38 0.42 2.85 16 12 C 0.12 3.21 0.97 -9.32 -0.01 3.20 16 13 O -0.55 -14.97 13.21 -148.98 -1.97 -16.93 16 14 C -0.11 -3.08 6.15 31.78 0.20 -2.88 16 15 C 0.11 4.51 4.94 86.73 0.43 4.94 16 16 N -0.62 -29.45 3.29 -691.53 -2.27 -31.72 16 17 C -0.32 -18.29 10.43 84.03 0.88 -17.41 16 18 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 19 C -0.08 -4.75 5.43 84.86 0.46 -4.29 16 20 N -0.95 -61.67 13.70 21.65 0.30 -61.37 16 21 Si 1.11 54.29 24.66 68.60 1.69 55.99 16 22 H -0.27 -12.39 6.76 99.48 0.67 -11.72 16 23 H -0.31 -15.30 7.11 99.48 0.71 -14.60 16 24 H -0.27 -12.19 6.71 99.48 0.67 -11.52 16 25 C 0.11 3.73 6.23 86.93 0.54 4.27 16 26 C 0.21 3.45 10.69 85.26 0.91 4.36 16 27 N -0.52 -10.51 10.37 -191.96 -1.99 -12.50 16 28 C 0.31 6.23 7.96 134.17 1.07 7.30 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.25 0.68 8.06 -2.91 -0.02 0.65 16 33 H 0.17 2.19 7.72 -2.91 -0.02 2.17 16 34 H 0.41 5.50 5.32 -92.71 -0.49 5.00 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 1.80 8.07 -2.39 -0.02 1.78 16 37 H 0.38 7.16 7.69 -74.05 -0.57 6.59 16 38 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.11 2.60 8.04 -2.39 -0.02 2.58 16 40 H 0.02 0.96 7.82 -2.39 -0.02 0.95 16 41 H 0.03 1.09 3.76 -2.38 -0.01 1.09 16 42 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 43 H 0.04 1.37 7.99 -2.39 -0.02 1.35 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.19 2.00 6.39 -2.91 -0.02 1.99 16 Total: -1.00 -84.06 371.47 -0.88 -84.95 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -0.12 Total: 12.93 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 8.08 Total: 12.75 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -8.50 Total: -134.46 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -2.03 Total: -32.15 kcal Atomic # 14 Polarization: 54.29 SS G_CDS: 1.69 Total: 55.99 kcal Total: -84.06 -0.88 -84.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569763248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.619 kcal (2) G-P(sol) polarization free energy of solvation -84.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds