Wall clock time and date at job start Wed Apr 1 2020 03:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36432 * 125.48964 * 2 1 4 4 C 1.34577 * 108.56269 * 180.02562 * 3 2 1 5 5 C 1.41935 * 107.33212 * 0.02562 * 4 3 2 6 6 C 1.48047 * 126.47526 * 179.97438 * 5 4 3 7 7 C 1.36683 * 126.59846 * 0.02562 * 6 5 4 8 8 C 1.41229 * 105.43669 * 179.97438 * 7 6 5 9 9 C 1.47729 * 126.34007 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00465 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99958 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99814 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46941 * 180.02562 * 12 11 9 14 14 O 1.42905 * 113.28091 * 313.06421 * 13 12 11 15 15 C 1.53495 * 114.20669 * 180.02562 * 13 12 11 16 16 N 1.47066 * 87.98658 * 220.34216 * 15 13 12 17 17 C 1.36937 * 136.06113 * 206.85859 * 16 15 13 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 15 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46896 * 90.00557 * 21 19 17 23 23 H 1.48506 * 109.46723 * 210.00327 * 21 19 17 24 24 H 1.48496 * 109.47378 * 330.00014 * 21 19 17 25 25 C 1.47067 * 87.88528 * 27.11900 * 16 15 13 26 26 N 1.31822 * 107.31743 * 0.24277 * 8 7 6 27 27 N 1.28453 * 110.43397 * 359.59046 * 26 8 7 28 28 H 0.97001 * 124.99919 * 180.15211 * 27 26 8 29 29 C 1.36154 * 125.48881 * 180.31481 * 2 1 3 30 30 H 1.08994 * 109.47155 * 90.02134 * 1 2 3 31 31 H 1.08998 * 109.46736 * 210.02283 * 1 2 3 32 32 H 1.08998 * 109.47026 * 330.01875 * 1 2 3 33 33 H 1.08001 * 125.71956 * 0.02562 * 3 2 1 34 34 H 1.08000 * 126.33710 * 180.02562 * 4 3 2 35 35 H 1.08004 * 127.27947 * 359.96804 * 7 6 5 36 36 H 0.96992 * 119.99879 * 359.97438 * 11 9 8 37 37 H 1.09003 * 109.47373 * 59.99924 * 12 11 9 38 38 H 1.08997 * 109.47135 * 299.99923 * 12 11 9 39 39 H 0.96696 * 113.99817 * 46.93921 * 14 13 12 40 40 H 1.09005 * 113.46950 * 105.56781 * 15 13 12 41 41 H 1.08998 * 113.47096 * 335.12425 * 15 13 12 42 42 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 43 43 H 1.09007 * 113.46858 * 87.65629 * 25 16 15 44 44 H 1.08993 * 113.47208 * 218.09965 * 25 16 15 45 45 H 1.07999 * 125.98622 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2571 1.1109 0.0000 4 6 3.5446 0.7190 -0.0006 5 6 3.5546 -0.7003 -0.0015 6 6 4.7513 -1.5719 -0.0030 7 6 6.0560 -1.1648 -0.0031 8 6 6.8204 -2.3523 -0.0040 9 6 8.2949 -2.4443 -0.0050 10 8 8.9672 -1.4314 -0.0056 11 7 8.8947 -3.6513 -0.0064 12 6 10.3569 -3.7425 -0.0080 13 6 10.7760 -5.2140 -0.0100 14 8 10.0697 -6.0038 0.9489 15 6 12.2949 -5.4358 -0.0111 16 7 12.0813 -6.5356 -0.9638 17 6 12.7332 -7.6933 -1.2955 18 1 13.6477 -7.9625 -0.7881 19 6 12.2179 -8.5214 -2.2833 20 7 11.1031 -8.1936 -2.9014 21 14 13.1068 -10.1010 -2.7353 22 1 12.6029 -11.2121 -1.8888 23 1 12.8593 -10.4164 -4.1652 24 1 14.5648 -9.9300 -2.5114 25 6 10.8631 -5.8418 -1.4080 26 7 5.9746 -3.3634 -0.0097 27 7 4.7636 -2.9350 -0.0039 28 1 3.9741 -3.4986 -0.0042 29 6 2.2555 -1.1086 -0.0061 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 1.9092 2.1333 0.0004 34 1 4.4101 1.3650 -0.0003 35 1 6.4245 -0.1495 -0.0027 36 1 8.3583 -4.4594 -0.0064 37 1 10.7525 -3.2529 0.8819 38 1 10.7506 -3.2518 -0.8980 39 1 9.1132 -5.8617 0.9474 40 1 12.6862 -5.7652 0.9515 41 1 12.8553 -4.6005 -0.4310 42 1 10.7432 -8.7721 -3.5918 43 1 11.0421 -5.1145 -2.2000 44 1 10.0370 -6.5162 -1.6331 45 1 1.9124 -2.1326 -0.0121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569775735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:35 Heat of formation + Delta-G solvation = 112.695935 kcal Electronic energy + Delta-G solvation = -28609.151305 eV Core-core repulsion = 24438.962522 eV Total energy + Delta-G solvation = -4170.188782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.67912 -41.43396 -39.59081 -38.42841 -34.91527 -34.01220 -33.76794 -32.12299 -31.88345 -31.02497 -29.07002 -28.45023 -26.67457 -26.18404 -24.71308 -23.72557 -22.47907 -21.72233 -20.90572 -20.27227 -19.93729 -19.24814 -18.51527 -17.48318 -16.85277 -16.52016 -15.98706 -15.77514 -15.66206 -15.38921 -14.87463 -14.61112 -14.54123 -13.90775 -13.87815 -13.85736 -13.52983 -13.37135 -13.23268 -13.06191 -12.92898 -12.87648 -12.63672 -12.37761 -12.15093 -11.75419 -11.02606 -10.98153 -10.85721 -10.62863 -10.39179 -10.17951 -10.12172 -9.76319 -9.47009 -9.43178 -9.04315 -8.84711 -8.79065 -8.74343 -8.13392 -6.83732 -5.71511 -3.03173 1.20829 1.66866 1.99766 2.38454 2.64439 3.01113 3.28619 3.44005 3.47958 3.50121 3.53394 4.14801 4.33448 4.43019 4.48969 4.54205 4.58740 4.61098 4.69870 4.80229 4.88505 5.06351 5.28679 5.33396 5.39480 5.44147 5.57281 5.66361 5.68005 5.86307 5.95786 6.11517 6.28720 6.38432 6.39820 6.48646 6.60867 6.62888 6.64237 6.78796 6.84717 7.07852 7.23742 7.52847 7.56646 7.82466 8.01199 8.21481 8.34928 9.08313 9.75102 10.66927 11.46290 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.001808 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.409670 B =15481.677731 C =16305.376445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.447 5.447 3 C -0.012 4.012 4 C -0.167 4.167 5 C -0.107 4.107 6 C 0.096 3.904 7 C -0.166 4.166 8 C -0.007 4.007 9 C 0.604 3.396 10 O -0.534 6.534 11 N -0.711 5.711 12 C 0.107 3.893 13 C 0.057 3.943 14 O -0.523 6.523 15 C 0.134 3.866 16 N -0.600 5.600 17 C -0.212 4.212 18 H 0.082 0.918 19 C -0.010 4.010 20 N -0.921 5.921 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.136 3.864 26 N -0.254 5.254 27 N -0.383 5.383 28 H 0.443 0.557 29 C -0.002 4.002 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.163 0.837 36 H 0.404 0.596 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.362 0.638 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.253 0.747 43 H 0.034 0.966 44 H 0.076 0.924 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.509 18.975 7.022 32.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.122 5.122 3 C -0.141 4.141 4 C -0.192 4.192 5 C -0.116 4.116 6 C -0.029 4.029 7 C -0.194 4.194 8 C -0.167 4.167 9 C 0.388 3.612 10 O -0.409 6.409 11 N -0.364 5.364 12 C -0.017 4.017 13 C 0.014 3.986 14 O -0.326 6.326 15 C 0.007 3.993 16 N -0.325 5.325 17 C -0.339 4.339 18 H 0.100 0.900 19 C -0.206 4.206 20 N -0.568 5.568 21 Si 0.745 3.255 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.010 3.990 26 N -0.090 5.090 27 N -0.098 5.098 28 H 0.287 0.713 29 C -0.135 4.135 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.180 0.820 36 H 0.240 0.760 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.208 0.792 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -24.661 17.998 6.961 31.314 hybrid contribution -0.928 -0.500 -0.588 1.207 sum -25.589 17.498 6.374 31.648 Atomic orbital electron populations 1.22081 0.76764 1.04613 1.03516 1.43864 1.06439 1.05949 1.55949 1.21809 0.90152 0.91586 1.10543 1.20870 0.96431 0.93209 1.08667 1.17266 0.88872 0.92826 1.12601 1.19185 0.93939 0.83058 1.06672 1.21570 0.89800 0.99555 1.08522 1.21798 0.94047 0.90742 1.10137 1.16851 0.84322 0.83614 0.76364 1.90790 1.64271 1.35387 1.50454 1.45786 1.08142 1.08157 1.74286 1.21992 0.78902 0.97762 1.03076 1.23411 0.95594 0.86447 0.93106 1.86619 1.21826 1.65975 1.58205 1.22386 0.90253 0.91773 0.94850 1.45265 1.26819 1.18673 1.41745 1.18910 1.04776 0.94243 1.15993 0.89996 1.24788 0.97888 0.99113 0.98791 1.69824 1.21158 1.38155 1.27710 0.86077 0.78824 0.83200 0.77405 1.21546 1.21702 1.20645 1.22753 0.92320 0.93433 0.90508 1.73494 0.89866 1.26507 1.19101 1.43436 1.06645 1.05337 1.54399 0.71294 1.21743 0.89651 0.91725 1.10349 0.90670 0.89720 0.89553 0.81567 0.83690 0.81969 0.76016 0.90789 0.89971 0.79189 0.93056 0.93223 0.93734 0.94841 0.90540 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.11 11.10 59.85 0.66 0.78 16 2 N -0.45 -2.36 3.14 -124.25 -0.39 -2.75 16 3 C -0.01 -0.07 11.40 -16.80 -0.19 -0.26 16 4 C -0.17 -1.32 10.65 -39.46 -0.42 -1.74 16 5 C -0.11 -0.92 6.12 -105.20 -0.64 -1.57 16 6 C 0.10 1.00 7.13 -82.41 -0.59 0.41 16 7 C -0.17 -2.08 10.57 -39.01 -0.41 -2.49 16 8 C -0.01 -0.09 7.11 -82.86 -0.59 -0.68 16 9 C 0.60 9.68 7.83 -12.38 -0.10 9.59 16 10 O -0.53 -9.91 16.92 5.30 0.09 -9.82 16 11 N -0.71 -10.76 5.34 -61.28 -0.33 -11.08 16 12 C 0.11 1.76 5.42 -4.04 -0.02 1.73 16 13 C 0.06 1.12 1.73 -90.11 -0.16 0.96 16 14 O -0.52 -10.24 13.56 -35.23 -0.48 -10.72 16 15 C 0.13 2.89 8.11 -8.51 -0.07 2.82 16 16 N -0.60 -16.04 3.78 -184.75 -0.70 -16.74 16 17 C -0.21 -6.18 10.75 -15.06 -0.16 -6.34 16 18 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.92 -28.04 11.51 55.49 0.64 -27.40 16 21 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.14 3.26 6.83 -8.51 -0.06 3.21 16 26 N -0.25 -3.19 11.89 33.37 0.40 -2.79 16 27 N -0.38 -3.66 6.90 33.31 0.23 -3.43 16 28 H 0.44 2.57 8.96 -190.45 -1.71 0.86 16 29 C 0.00 -0.01 11.40 -16.37 -0.19 -0.20 16 30 H 0.07 0.07 8.14 -51.93 -0.42 -0.36 16 31 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.16 1.88 8.06 -52.48 -0.42 1.45 16 36 H 0.40 5.64 6.66 -40.82 -0.27 5.37 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.38 7.89 -51.93 -0.41 0.97 16 39 H 0.36 5.56 7.20 45.56 0.33 5.89 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 43 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 44 H 0.08 2.04 7.12 -51.93 -0.37 1.67 16 45 H 0.16 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -38.67 388.48 -9.35 -48.01 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.61 Total: 7.29 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -3.03 Total: 5.84 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: -0.15 Total: -64.20 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.39 Total: -20.53 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.67 -9.35 -48.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569775735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.710 kcal (2) G-P(sol) polarization free energy of solvation -38.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds