Wall clock time and date at job start Wed Apr 1 2020 03:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36432 * 125.48964 * 2 1 4 4 C 1.34577 * 108.56269 * 180.02562 * 3 2 1 5 5 C 1.41935 * 107.33212 * 0.02562 * 4 3 2 6 6 C 1.48047 * 126.47526 * 179.97438 * 5 4 3 7 7 C 1.36683 * 126.59846 * 0.02562 * 6 5 4 8 8 C 1.41229 * 105.43669 * 179.97438 * 7 6 5 9 9 C 1.47729 * 126.34007 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00465 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99958 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99814 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46941 * 180.02562 * 12 11 9 14 14 O 1.42905 * 113.28091 * 313.06421 * 13 12 11 15 15 C 1.53495 * 114.20669 * 180.02562 * 13 12 11 16 16 N 1.47066 * 87.98658 * 220.34216 * 15 13 12 17 17 C 1.36937 * 136.06113 * 206.85859 * 16 15 13 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 15 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46896 * 90.00557 * 21 19 17 23 23 H 1.48506 * 109.46723 * 210.00327 * 21 19 17 24 24 H 1.48496 * 109.47378 * 330.00014 * 21 19 17 25 25 C 1.47067 * 87.88528 * 27.11900 * 16 15 13 26 26 N 1.31822 * 107.31743 * 0.24277 * 8 7 6 27 27 N 1.28453 * 110.43397 * 359.59046 * 26 8 7 28 28 H 0.97001 * 124.99919 * 180.15211 * 27 26 8 29 29 C 1.36154 * 125.48881 * 180.31481 * 2 1 3 30 30 H 1.08994 * 109.47155 * 90.02134 * 1 2 3 31 31 H 1.08998 * 109.46736 * 210.02283 * 1 2 3 32 32 H 1.08998 * 109.47026 * 330.01875 * 1 2 3 33 33 H 1.08001 * 125.71956 * 0.02562 * 3 2 1 34 34 H 1.08000 * 126.33710 * 180.02562 * 4 3 2 35 35 H 1.08004 * 127.27947 * 359.96804 * 7 6 5 36 36 H 0.96992 * 119.99879 * 359.97438 * 11 9 8 37 37 H 1.09003 * 109.47373 * 59.99924 * 12 11 9 38 38 H 1.08997 * 109.47135 * 299.99923 * 12 11 9 39 39 H 0.96696 * 113.99817 * 46.93921 * 14 13 12 40 40 H 1.09005 * 113.46950 * 105.56781 * 15 13 12 41 41 H 1.08998 * 113.47096 * 335.12425 * 15 13 12 42 42 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 43 43 H 1.09007 * 113.46858 * 87.65629 * 25 16 15 44 44 H 1.08993 * 113.47208 * 218.09965 * 25 16 15 45 45 H 1.07999 * 125.98622 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2571 1.1109 0.0000 4 6 3.5446 0.7190 -0.0006 5 6 3.5546 -0.7003 -0.0015 6 6 4.7513 -1.5719 -0.0030 7 6 6.0560 -1.1648 -0.0031 8 6 6.8204 -2.3523 -0.0040 9 6 8.2949 -2.4443 -0.0050 10 8 8.9672 -1.4314 -0.0056 11 7 8.8947 -3.6513 -0.0064 12 6 10.3569 -3.7425 -0.0080 13 6 10.7760 -5.2140 -0.0100 14 8 10.0697 -6.0038 0.9489 15 6 12.2949 -5.4358 -0.0111 16 7 12.0813 -6.5356 -0.9638 17 6 12.7332 -7.6933 -1.2955 18 1 13.6477 -7.9625 -0.7881 19 6 12.2179 -8.5214 -2.2833 20 7 11.1031 -8.1936 -2.9014 21 14 13.1068 -10.1010 -2.7353 22 1 12.6029 -11.2121 -1.8888 23 1 12.8593 -10.4164 -4.1652 24 1 14.5648 -9.9300 -2.5114 25 6 10.8631 -5.8418 -1.4080 26 7 5.9746 -3.3634 -0.0097 27 7 4.7636 -2.9350 -0.0039 28 1 3.9741 -3.4986 -0.0042 29 6 2.2555 -1.1086 -0.0061 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 1.9092 2.1333 0.0004 34 1 4.4101 1.3650 -0.0003 35 1 6.4245 -0.1495 -0.0027 36 1 8.3583 -4.4594 -0.0064 37 1 10.7525 -3.2529 0.8819 38 1 10.7506 -3.2518 -0.8980 39 1 9.1132 -5.8617 0.9474 40 1 12.6862 -5.7652 0.9515 41 1 12.8553 -4.6005 -0.4310 42 1 10.7432 -8.7721 -3.5918 43 1 11.0421 -5.1145 -2.2000 44 1 10.0370 -6.5162 -1.6331 45 1 1.9124 -2.1326 -0.0121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569775735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:34 Heat of formation + Delta-G solvation = 82.396565 kcal Electronic energy + Delta-G solvation = -28610.465184 eV Core-core repulsion = 24438.962522 eV Total energy + Delta-G solvation = -4171.502662 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.55293 -41.91170 -41.09612 -39.93681 -36.59412 -35.27795 -34.40070 -34.06919 -32.98386 -31.69169 -30.37065 -29.42571 -27.92872 -27.01707 -26.53558 -25.05274 -23.57099 -23.08114 -21.66642 -21.16416 -20.91582 -20.73332 -19.09263 -18.94725 -18.40756 -17.61780 -17.16656 -16.87397 -16.85128 -16.45439 -16.14641 -15.89372 -15.71206 -15.47699 -15.04517 -14.91299 -14.67580 -14.59307 -14.40053 -14.00518 -13.87724 -13.66465 -13.45211 -13.30661 -13.21748 -12.99910 -12.86127 -12.82339 -12.49628 -12.23518 -11.92204 -11.79766 -11.47536 -11.20182 -10.94757 -10.88975 -10.67600 -10.44460 -10.10171 -9.32703 -8.94002 -8.76677 -7.90950 -5.24153 0.42357 0.68696 1.44979 1.47732 1.48196 1.56404 1.79769 2.02928 2.17803 2.26219 2.45522 2.46864 3.04347 3.29602 3.31840 3.38107 3.60774 3.78018 3.90645 4.03129 4.13758 4.18944 4.32411 4.40211 4.50399 4.51960 4.61744 4.70825 4.76290 4.78945 4.79259 4.86136 4.94777 5.14408 5.16241 5.23133 5.32060 5.35610 5.38123 5.47726 5.84254 5.91086 6.08149 6.16974 6.36362 6.43765 6.77507 6.88089 6.89855 7.10618 7.58444 8.57615 9.26690 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.001808 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.409670 B =15481.677731 C =16305.376445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.445 5.445 3 C -0.009 4.009 4 C -0.195 4.195 5 C -0.144 4.144 6 C 0.117 3.883 7 C -0.192 4.192 8 C -0.029 4.029 9 C 0.606 3.394 10 O -0.565 6.565 11 N -0.705 5.705 12 C 0.121 3.879 13 C 0.091 3.909 14 O -0.537 6.537 15 C 0.130 3.870 16 N -0.634 5.634 17 C -0.228 4.228 18 H 0.086 0.914 19 C -0.070 4.070 20 N -0.954 5.954 21 Si 0.984 3.016 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.267 1.267 25 C 0.134 3.866 26 N -0.263 5.263 27 N -0.366 5.366 28 H 0.460 0.540 29 C 0.009 3.991 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.193 0.807 34 H 0.141 0.859 35 H 0.161 0.839 36 H 0.410 0.590 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.380 0.620 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.248 0.752 43 H 0.029 0.971 44 H 0.043 0.957 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.631 19.426 7.807 34.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.119 5.119 3 C -0.138 4.138 4 C -0.220 4.220 5 C -0.153 4.153 6 C -0.009 4.009 7 C -0.221 4.221 8 C -0.189 4.189 9 C 0.391 3.609 10 O -0.442 6.442 11 N -0.358 5.358 12 C -0.004 4.004 13 C 0.048 3.952 14 O -0.343 6.343 15 C 0.004 3.996 16 N -0.359 5.359 17 C -0.356 4.356 18 H 0.104 0.896 19 C -0.262 4.262 20 N -0.602 5.602 21 Si 0.811 3.189 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.192 1.192 25 C 0.008 3.992 26 N -0.100 5.100 27 N -0.083 5.083 28 H 0.308 0.692 29 C -0.125 4.125 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.210 0.790 34 H 0.159 0.841 35 H 0.179 0.821 36 H 0.247 0.753 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.229 0.771 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -26.821 18.458 7.777 33.474 hybrid contribution -0.453 -0.562 -0.795 1.074 sum -27.274 17.895 6.982 33.359 Atomic orbital electron populations 1.22385 0.74312 1.06220 1.04651 1.44205 1.07941 1.05383 1.54371 1.22202 0.89619 0.92951 1.09052 1.21056 0.97541 0.93242 1.10164 1.17367 0.89216 0.93014 1.15672 1.19340 0.93955 0.83277 1.04292 1.21665 0.90754 0.99290 1.10347 1.21561 0.93213 0.91807 1.12273 1.17078 0.85164 0.83114 0.75509 1.90761 1.65181 1.36261 1.51972 1.45686 1.07617 1.08399 1.74117 1.21757 0.79758 0.95144 1.03725 1.22896 0.94629 0.87704 0.89988 1.86571 1.23581 1.66464 1.57721 1.22620 0.91933 0.90954 0.94051 1.45618 1.27833 1.19441 1.43055 1.19325 1.04974 0.95433 1.15853 0.89648 1.25679 0.98893 1.02556 0.99110 1.70017 1.22680 1.39288 1.28256 0.85003 0.78286 0.78961 0.76615 1.21257 1.21934 1.19173 1.22744 0.90584 0.92818 0.93101 1.73417 0.90714 1.26279 1.19577 1.43473 1.06461 1.05507 1.52873 0.69218 1.22174 0.88995 0.93267 1.08087 0.89714 0.88238 0.87992 0.78987 0.84141 0.82149 0.75322 0.89347 0.90103 0.77063 0.92639 0.90706 0.94297 0.95328 0.93858 0.79250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.02 11.10 127.77 1.42 1.40 16 2 N -0.45 -3.46 3.14 -547.03 -1.72 -5.17 16 3 C -0.01 -0.09 11.40 83.14 0.95 0.86 16 4 C -0.20 -2.98 10.65 22.35 0.24 -2.74 16 5 C -0.14 -2.34 6.12 -20.24 -0.12 -2.46 16 6 C 0.12 2.37 7.13 40.69 0.29 2.66 16 7 C -0.19 -4.93 10.57 22.64 0.24 -4.69 16 8 C -0.03 -0.84 7.11 42.39 0.30 -0.53 16 9 C 0.61 19.60 7.83 86.75 0.68 20.28 16 10 O -0.56 -21.26 16.92 -3.96 -0.07 -21.33 16 11 N -0.71 -21.18 5.34 -466.06 -2.49 -23.66 16 12 C 0.12 3.87 5.42 86.38 0.47 4.33 16 13 C 0.09 3.49 1.73 -10.46 -0.02 3.47 16 14 O -0.54 -20.67 13.56 -148.98 -2.02 -22.69 16 15 C 0.13 5.50 8.11 83.18 0.67 6.17 16 16 N -0.63 -34.20 3.78 -738.90 -2.79 -37.00 16 17 C -0.23 -13.40 10.75 84.03 0.90 -12.50 16 18 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 20 N -0.95 -59.43 11.51 21.65 0.25 -59.18 16 21 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 C 0.13 6.54 6.83 83.18 0.57 7.11 16 26 N -0.26 -6.49 11.89 -48.33 -0.57 -7.06 16 27 N -0.37 -6.59 6.90 -48.51 -0.33 -6.93 16 28 H 0.46 4.45 8.96 -220.00 -1.97 2.48 16 29 C 0.01 0.09 11.40 83.54 0.95 1.05 16 30 H 0.08 -0.14 8.14 -2.39 -0.02 -0.15 16 31 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.41 11.34 6.66 -92.71 -0.62 10.72 16 37 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.08 2.66 7.89 -2.39 -0.02 2.64 16 39 H 0.38 11.39 7.20 -74.06 -0.53 10.85 16 40 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 42 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 43 H 0.03 1.42 7.93 -2.38 -0.02 1.40 16 44 H 0.04 2.39 7.12 -2.39 -0.02 2.37 16 45 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -85.02 388.48 -1.78 -86.79 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -2.06 Total: 26.18 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 8.00 Total: 20.75 kcal Atomic # 7 Polarization: -131.34 SS G_CDS: -7.66 Total: -139.01 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -2.09 Total: -44.02 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -85.02 -1.78 -86.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569775735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.189 kcal (2) G-P(sol) polarization free energy of solvation -85.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds