Wall clock time and date at job start Wed Apr 1 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34455 * 125.77212 * 2 1 4 4 C 1.38074 * 107.39352 * 180.13559 * 3 2 1 5 5 C 1.47351 * 126.41028 * 179.89507 * 4 3 2 6 6 O 1.34254 * 127.19959 * 311.94600 * 5 4 3 7 7 N 1.20733 * 111.95410 * 180.02562 * 6 5 4 8 8 C 1.29869 * 112.81492 * 359.74235 * 7 6 5 9 9 C 1.39928 * 127.19361 * 131.97694 * 5 4 3 10 10 C 1.46921 * 128.39904 * 359.94136 * 9 5 4 11 11 O 1.21672 * 119.99870 * 354.88070 * 10 9 5 12 12 N 1.34774 * 120.00275 * 174.87675 * 10 9 5 13 13 C 1.46498 * 120.00006 * 180.02562 * 12 10 9 14 14 H 1.09002 * 112.90580 * 336.24500 * 13 12 10 15 15 C 1.54051 * 113.61559 * 107.62063 * 13 12 10 16 16 C 1.53775 * 87.08057 * 89.06912 * 15 13 12 17 17 H 1.08997 * 113.61971 * 270.88488 * 16 15 13 18 18 C 1.52997 * 113.68867 * 139.98680 * 16 15 13 19 19 N 1.46500 * 109.47207 * 87.47016 * 18 16 15 20 20 C 1.36931 * 120.00438 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99905 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00235 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00075 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46693 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46985 * 119.99506 * 24 22 20 27 27 H 1.48504 * 109.47078 * 240.00257 * 24 22 20 28 28 C 1.53782 * 87.07944 * 25.43221 * 16 15 13 29 29 C 1.41304 * 107.17606 * 359.63800 * 4 3 2 30 30 N 1.30477 * 108.05875 * 0.22033 * 29 4 3 31 31 H 1.08994 * 109.47441 * 270.24968 * 1 2 3 32 32 H 1.09001 * 109.46725 * 30.24674 * 1 2 3 33 33 H 1.09001 * 109.47297 * 150.24317 * 1 2 3 34 34 H 1.08002 * 126.30450 * 359.97438 * 3 2 1 35 35 H 1.08001 * 126.79565 * 180.27919 * 8 7 6 36 36 H 0.97006 * 119.99745 * 359.97438 * 12 10 9 37 37 H 1.09008 * 113.61400 * 334.51860 * 15 13 12 38 38 H 1.09001 * 113.60931 * 203.62087 * 15 13 12 39 39 H 1.09002 * 109.46998 * 207.46759 * 18 16 15 40 40 H 1.08998 * 109.47648 * 327.46616 * 18 16 15 41 41 H 0.97003 * 119.99489 * 359.97438 * 19 18 16 42 42 H 0.97003 * 120.00107 * 180.02562 * 23 22 20 43 43 H 1.09000 * 113.62211 * 89.11678 * 28 16 15 44 44 H 1.09002 * 113.61254 * 219.93635 * 28 16 15 45 45 H 1.08003 * 125.97150 * 180.26302 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2509 1.0909 0.0000 4 6 3.5612 0.6556 -0.0031 5 6 4.7651 1.5052 -0.0064 6 8 5.0142 2.5569 -0.8028 7 7 6.0890 3.0550 -0.5699 8 6 6.7253 2.4539 0.3896 9 6 5.8882 1.3841 0.8195 10 6 6.1404 0.3968 1.8779 11 8 5.2728 -0.3979 2.1878 12 7 7.3329 0.3713 2.5054 13 6 7.5845 -0.6136 3.5603 14 1 6.6698 -0.9752 4.0301 15 6 8.5497 -1.7375 3.1379 16 6 9.6922 -0.8349 3.6326 17 1 10.0802 -0.1625 2.8675 18 6 10.7962 -1.5914 4.3740 19 7 11.7867 -2.0779 3.4104 20 6 12.8735 -2.7884 3.8452 21 1 13.0007 -2.9899 4.8986 22 6 13.8117 -3.2497 2.9321 23 7 13.6570 -3.0037 1.6484 24 14 15.2947 -4.2184 3.5253 25 1 15.2363 -4.3575 5.0027 26 1 15.2877 -5.5659 2.9011 27 1 16.5386 -3.5024 3.1438 28 6 8.6626 -0.1769 4.5663 29 6 3.5316 -0.7572 0.0035 30 7 2.2829 -1.1355 0.0054 31 1 -0.3634 0.0045 1.0276 32 1 -0.3633 0.8878 -0.5177 33 1 -0.3634 -0.8922 -0.5101 34 1 1.9186 2.1185 -0.0004 35 1 7.6974 2.7125 0.7826 36 1 8.0248 1.0046 2.2579 37 1 8.5684 -1.9158 2.0627 38 1 8.4342 -2.6531 3.7179 39 1 11.2799 -0.9227 5.0860 40 1 10.3622 -2.4372 4.9072 41 1 11.6722 -1.8972 2.4642 42 1 14.3125 -3.3264 1.0102 43 1 8.5779 -0.6658 5.5368 44 1 8.7734 0.9046 4.6455 45 1 4.3922 -1.4097 0.0072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571139938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:23 Heat of formation + Delta-G solvation = 144.755285 kcal Electronic energy + Delta-G solvation = -28912.364247 eV Core-core repulsion = 24743.565662 eV Total energy + Delta-G solvation = -4168.798585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.15401 -41.48088 -40.12793 -38.25049 -34.57912 -34.33622 -34.05490 -32.94441 -32.54259 -30.83022 -29.84846 -27.35881 -26.86234 -25.49082 -25.09495 -23.49081 -23.06002 -21.72453 -21.39377 -21.17000 -20.50699 -19.04719 -18.58015 -17.88164 -17.55942 -17.01368 -16.26988 -15.95184 -15.86701 -15.13115 -14.96189 -14.87281 -14.66023 -14.37731 -14.01386 -13.70446 -13.61557 -13.46841 -13.31054 -13.22282 -12.84614 -12.76216 -12.36518 -12.13515 -11.93413 -11.65054 -11.20253 -11.02878 -10.83547 -10.77659 -10.48583 -10.32405 -10.16294 -10.07518 -10.06744 -9.83259 -9.81875 -9.60025 -9.03298 -8.83479 -8.61228 -6.88270 -5.74323 -3.02377 0.55576 1.47482 1.60196 1.96320 2.30408 2.69213 3.11774 3.12025 3.44684 3.50197 3.52522 3.94286 4.01397 4.30039 4.37941 4.44972 4.59455 4.66153 4.67833 4.78132 4.82256 4.90003 4.93915 5.09797 5.12437 5.14990 5.30939 5.38945 5.54199 5.60097 5.73603 5.87637 5.94654 6.01721 6.12070 6.16715 6.24921 6.31823 6.43164 6.43631 6.63380 6.80139 6.95019 7.26997 7.39616 7.72565 7.87991 8.10361 8.44910 9.55974 10.15324 10.49610 11.48677 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.001969 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.866120 B =14219.976697 C =14609.622591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.365 5.365 3 C 0.101 3.899 4 C -0.196 4.196 5 C 0.134 3.866 6 O 0.104 5.896 7 N -0.365 5.365 8 C 0.030 3.970 9 C -0.253 4.253 10 C 0.599 3.401 11 O -0.527 6.527 12 N -0.701 5.701 13 C 0.118 3.882 14 H 0.102 0.898 15 C -0.138 4.138 16 C -0.114 4.114 17 H 0.087 0.913 18 C 0.162 3.838 19 N -0.732 5.732 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.138 4.138 29 C 0.126 3.874 30 N -0.297 5.297 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.185 0.815 35 H 0.199 0.801 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.018 0.982 40 H 0.020 0.980 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.822 13.221 -2.869 30.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.143 5.143 3 C -0.050 4.050 4 C -0.209 4.209 5 C 0.067 3.933 6 O 0.043 5.957 7 N -0.069 5.069 8 C -0.150 4.150 9 C -0.261 4.261 10 C 0.385 3.615 11 O -0.404 6.404 12 N -0.351 5.351 13 C 0.013 3.987 14 H 0.120 0.880 15 C -0.177 4.177 16 C -0.132 4.132 17 H 0.106 0.894 18 C 0.034 3.966 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.177 4.177 29 C -0.062 4.062 30 N -0.116 5.116 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.202 0.798 35 H 0.216 0.784 36 H 0.235 0.765 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -29.049 12.595 -3.301 31.833 hybrid contribution 2.037 0.056 0.412 2.079 sum -27.012 12.651 -2.889 29.967 Atomic orbital electron populations 1.21980 0.73400 1.04967 1.03933 1.48333 1.07196 1.03793 1.54970 1.22937 0.89923 0.93824 0.98284 1.17659 0.88253 0.92031 1.22977 1.22026 0.93867 0.88094 0.89309 1.84897 1.28409 1.34946 1.47424 1.73545 0.94558 1.20720 1.18116 1.25033 1.01917 0.93386 0.94631 1.21370 0.97134 1.02991 1.04591 1.16652 0.82289 0.82369 0.80193 1.90838 1.44412 1.40284 1.64892 1.45451 1.14937 1.36411 1.38281 1.22002 0.98518 0.89890 0.88297 0.88045 1.23464 0.94854 0.97259 1.02080 1.22758 0.94612 0.97778 0.98077 0.89443 1.20637 0.88942 0.94667 0.92304 1.42353 1.24215 1.65410 1.05599 1.19291 0.99032 1.25881 0.92695 0.91186 1.24744 0.99309 1.01758 0.95370 1.69669 1.37024 1.51192 1.00365 0.86124 0.82896 0.79548 0.77682 1.20579 1.21903 1.21910 1.23319 0.95198 1.00872 0.98277 1.23927 0.95034 0.92713 0.94494 1.77312 1.01572 1.07261 1.25477 0.90226 0.89080 0.88748 0.79791 0.78388 0.76466 0.91229 0.89054 0.96427 0.96203 0.78340 0.93619 0.88658 0.91268 0.79249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.34 11.44 59.84 0.68 1.02 16 2 N -0.36 -2.97 3.99 -67.54 -0.27 -3.24 16 3 C 0.10 0.77 11.51 -16.46 -0.19 0.58 16 4 C -0.20 -2.02 5.57 -105.08 -0.58 -2.60 16 5 C 0.13 1.43 7.39 -35.24 -0.26 1.17 16 6 O 0.10 1.10 11.17 16.66 0.19 1.28 16 7 N -0.36 -4.02 11.97 30.85 0.37 -3.65 16 8 C 0.03 0.29 11.68 -16.75 -0.20 0.09 16 9 C -0.25 -2.77 6.36 -104.12 -0.66 -3.43 16 10 C 0.60 7.41 7.80 -12.75 -0.10 7.31 16 11 O -0.53 -7.94 14.13 5.21 0.07 -7.87 16 12 N -0.70 -7.68 5.26 -54.11 -0.28 -7.97 16 13 C 0.12 1.42 4.34 -66.98 -0.29 1.13 16 14 H 0.10 1.29 7.46 -51.93 -0.39 0.91 16 15 C -0.14 -1.99 7.44 -25.78 -0.19 -2.18 16 16 C -0.11 -1.70 3.63 -89.81 -0.33 -2.03 16 17 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 18 C 0.16 3.18 6.10 -4.04 -0.02 3.16 16 19 N -0.73 -18.51 5.60 -59.91 -0.34 -18.85 16 20 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 21 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 24 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 C -0.14 -1.60 7.38 -25.92 -0.19 -1.79 16 29 C 0.13 1.46 10.38 -16.96 -0.18 1.28 16 30 N -0.30 -3.42 12.50 30.87 0.39 -3.03 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.19 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.20 1.27 7.77 -52.49 -0.41 0.86 16 36 H 0.40 3.58 7.95 -40.82 -0.32 3.25 16 37 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 41 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 43 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.19 2.16 7.80 -52.48 -0.41 1.75 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -36.25 388.76 -7.08 -43.33 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.01 Total: 7.99 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.75 Total: -3.71 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: 0.59 Total: -64.46 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: 0.26 Total: -6.58 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.25 -7.08 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571139938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.082 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds