Wall clock time and date at job start Wed Apr 1 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34455 * 125.77212 * 2 1 4 4 C 1.38074 * 107.39352 * 180.13559 * 3 2 1 5 5 C 1.47351 * 126.41028 * 179.89507 * 4 3 2 6 6 O 1.34254 * 127.19959 * 311.94600 * 5 4 3 7 7 N 1.20733 * 111.95410 * 180.02562 * 6 5 4 8 8 C 1.29869 * 112.81492 * 359.74235 * 7 6 5 9 9 C 1.39928 * 127.19361 * 131.97694 * 5 4 3 10 10 C 1.46921 * 128.39904 * 359.94136 * 9 5 4 11 11 O 1.21672 * 119.99870 * 354.88070 * 10 9 5 12 12 N 1.34774 * 120.00275 * 174.87675 * 10 9 5 13 13 C 1.46498 * 120.00006 * 180.02562 * 12 10 9 14 14 H 1.09002 * 112.90580 * 336.24500 * 13 12 10 15 15 C 1.54051 * 113.61559 * 107.62063 * 13 12 10 16 16 C 1.53775 * 87.08057 * 89.06912 * 15 13 12 17 17 H 1.08997 * 113.61971 * 270.88488 * 16 15 13 18 18 C 1.52997 * 113.68867 * 139.98680 * 16 15 13 19 19 N 1.46500 * 109.47207 * 87.47016 * 18 16 15 20 20 C 1.36931 * 120.00438 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99905 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00235 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00075 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46693 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46985 * 119.99506 * 24 22 20 27 27 H 1.48504 * 109.47078 * 240.00257 * 24 22 20 28 28 C 1.53782 * 87.07944 * 25.43221 * 16 15 13 29 29 C 1.41304 * 107.17606 * 359.63800 * 4 3 2 30 30 N 1.30477 * 108.05875 * 0.22033 * 29 4 3 31 31 H 1.08994 * 109.47441 * 270.24968 * 1 2 3 32 32 H 1.09001 * 109.46725 * 30.24674 * 1 2 3 33 33 H 1.09001 * 109.47297 * 150.24317 * 1 2 3 34 34 H 1.08002 * 126.30450 * 359.97438 * 3 2 1 35 35 H 1.08001 * 126.79565 * 180.27919 * 8 7 6 36 36 H 0.97006 * 119.99745 * 359.97438 * 12 10 9 37 37 H 1.09008 * 113.61400 * 334.51860 * 15 13 12 38 38 H 1.09001 * 113.60931 * 203.62087 * 15 13 12 39 39 H 1.09002 * 109.46998 * 207.46759 * 18 16 15 40 40 H 1.08998 * 109.47648 * 327.46616 * 18 16 15 41 41 H 0.97003 * 119.99489 * 359.97438 * 19 18 16 42 42 H 0.97003 * 120.00107 * 180.02562 * 23 22 20 43 43 H 1.09000 * 113.62211 * 89.11678 * 28 16 15 44 44 H 1.09002 * 113.61254 * 219.93635 * 28 16 15 45 45 H 1.08003 * 125.97150 * 180.26302 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2509 1.0909 0.0000 4 6 3.5612 0.6556 -0.0031 5 6 4.7651 1.5052 -0.0064 6 8 5.0142 2.5569 -0.8028 7 7 6.0890 3.0550 -0.5699 8 6 6.7253 2.4539 0.3896 9 6 5.8882 1.3841 0.8195 10 6 6.1404 0.3968 1.8779 11 8 5.2728 -0.3979 2.1878 12 7 7.3329 0.3713 2.5054 13 6 7.5845 -0.6136 3.5603 14 1 6.6698 -0.9752 4.0301 15 6 8.5497 -1.7375 3.1379 16 6 9.6922 -0.8349 3.6326 17 1 10.0802 -0.1625 2.8675 18 6 10.7962 -1.5914 4.3740 19 7 11.7867 -2.0779 3.4104 20 6 12.8735 -2.7884 3.8452 21 1 13.0007 -2.9899 4.8986 22 6 13.8117 -3.2497 2.9321 23 7 13.6570 -3.0037 1.6484 24 14 15.2947 -4.2184 3.5253 25 1 15.2363 -4.3575 5.0027 26 1 15.2877 -5.5659 2.9011 27 1 16.5386 -3.5024 3.1438 28 6 8.6626 -0.1769 4.5663 29 6 3.5316 -0.7572 0.0035 30 7 2.2829 -1.1355 0.0054 31 1 -0.3634 0.0045 1.0276 32 1 -0.3633 0.8878 -0.5177 33 1 -0.3634 -0.8922 -0.5101 34 1 1.9186 2.1185 -0.0004 35 1 7.6974 2.7125 0.7826 36 1 8.0248 1.0046 2.2579 37 1 8.5684 -1.9158 2.0627 38 1 8.4342 -2.6531 3.7179 39 1 11.2799 -0.9227 5.0860 40 1 10.3622 -2.4372 4.9072 41 1 11.6722 -1.8972 2.4642 42 1 14.3125 -3.3264 1.0102 43 1 8.5779 -0.6658 5.5368 44 1 8.7734 0.9046 4.6455 45 1 4.3922 -1.4097 0.0072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571139938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:23 Heat of formation + Delta-G solvation = 119.231451 kcal Electronic energy + Delta-G solvation = -28913.471044 eV Core-core repulsion = 24743.565662 eV Total energy + Delta-G solvation = -4169.905381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.93450 -42.16181 -41.16626 -39.35794 -36.32360 -35.18734 -34.77182 -34.12879 -33.28158 -32.70895 -30.55419 -28.61821 -27.71247 -26.58028 -26.17237 -24.99908 -23.99541 -22.95175 -22.39526 -21.88290 -21.34560 -20.24085 -19.36117 -19.03939 -18.67083 -18.30660 -17.02754 -16.95210 -16.64948 -16.41689 -16.03412 -15.98508 -15.69705 -15.50129 -15.32547 -15.07114 -14.72638 -14.43347 -14.30975 -14.05408 -13.69927 -13.62216 -13.34983 -13.28150 -13.10588 -12.90572 -12.72434 -12.70202 -12.11747 -11.93525 -11.91679 -11.71137 -11.56700 -11.32491 -11.14202 -11.12358 -10.88592 -10.84433 -10.52437 -10.02441 -9.33863 -8.96075 -7.94245 -5.22082 -0.22904 0.78949 0.84260 1.36232 1.47327 1.48162 1.57100 1.58235 1.86244 2.20991 2.26795 2.56730 3.22796 3.35370 3.38982 3.58366 3.62680 3.64593 3.83179 3.86768 3.97439 3.98778 4.09027 4.22190 4.36057 4.43640 4.46387 4.61023 4.66492 4.67477 4.74918 4.79792 4.84269 4.89457 4.93411 4.96837 5.02637 5.19537 5.30648 5.37315 5.39496 5.50878 5.70431 5.92772 6.28864 6.50807 6.54577 7.09957 7.18816 7.34757 8.13565 8.35408 9.29494 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.001969 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.866120 B =14219.976697 C =14609.622591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.361 5.361 3 C 0.122 3.878 4 C -0.226 4.226 5 C 0.143 3.857 6 O 0.102 5.898 7 N -0.383 5.383 8 C 0.043 3.957 9 C -0.271 4.271 10 C 0.600 3.400 11 O -0.558 6.558 12 N -0.692 5.692 13 C 0.131 3.869 14 H 0.098 0.902 15 C -0.143 4.143 16 C -0.112 4.112 17 H 0.087 0.913 18 C 0.159 3.841 19 N -0.745 5.745 20 C -0.243 4.243 21 H 0.075 0.925 22 C -0.079 4.079 23 N -0.970 5.970 24 Si 0.973 3.027 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.293 1.293 28 C -0.116 4.116 29 C 0.110 3.890 30 N -0.332 5.332 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.228 0.772 35 H 0.228 0.772 36 H 0.413 0.587 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.022 0.978 40 H 0.020 0.980 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.993 15.022 -1.798 32.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.139 5.139 3 C -0.030 4.030 4 C -0.239 4.239 5 C 0.075 3.925 6 O 0.043 5.957 7 N -0.090 5.090 8 C -0.137 4.137 9 C -0.279 4.279 10 C 0.387 3.613 11 O -0.438 6.438 12 N -0.343 5.343 13 C 0.025 3.975 14 H 0.116 0.884 15 C -0.182 4.182 16 C -0.130 4.130 17 H 0.105 0.895 18 C 0.033 3.967 19 N -0.387 5.387 20 C -0.375 4.375 21 H 0.093 0.907 22 C -0.271 4.271 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.190 1.190 26 H -0.222 1.222 27 H -0.220 1.220 28 C -0.154 4.154 29 C -0.077 4.077 30 N -0.152 5.152 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.113 0.887 34 H 0.245 0.755 35 H 0.245 0.755 36 H 0.249 0.751 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -30.252 14.409 -2.198 33.580 hybrid contribution 2.265 -0.511 0.093 2.324 sum -27.987 13.897 -2.105 31.318 Atomic orbital electron populations 1.22411 0.70716 1.06831 1.05245 1.48735 1.08630 1.03049 1.53471 1.23572 0.88749 0.95305 0.95416 1.17823 0.89455 0.91474 1.25159 1.22157 0.93877 0.87743 0.88685 1.84889 1.28442 1.34989 1.47354 1.73533 0.94966 1.21548 1.18971 1.25454 1.02491 0.92151 0.93585 1.21292 0.98099 1.03550 1.04947 1.16827 0.82140 0.82135 0.80178 1.90826 1.45486 1.41585 1.65888 1.45360 1.14941 1.36184 1.37802 1.21799 0.98052 0.89170 0.88457 0.88359 1.23471 0.95902 0.97929 1.00854 1.22688 0.93638 0.97876 0.98831 0.89521 1.20841 0.89065 0.94965 0.91860 1.42591 1.24776 1.65322 1.06044 1.19705 0.99649 1.25193 0.92948 0.90680 1.25575 1.02413 1.03539 0.95599 1.69823 1.38028 1.52802 1.01445 0.85079 0.79221 0.77625 0.77886 1.18989 1.22223 1.21976 1.23230 0.92286 1.02173 0.97749 1.23822 0.94985 0.93529 0.95324 1.77217 1.01937 1.09392 1.26701 0.89147 0.85438 0.88738 0.75518 0.75534 0.75070 0.93023 0.89686 0.96012 0.96237 0.79550 0.94104 0.87547 0.88865 0.80662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.39 11.44 127.77 1.46 1.86 16 2 N -0.36 -5.37 3.99 -367.61 -1.47 -6.84 16 3 C 0.12 1.61 11.51 84.25 0.97 2.58 16 4 C -0.23 -4.60 5.57 -20.16 -0.11 -4.71 16 5 C 0.14 2.97 7.39 25.08 0.19 3.16 16 6 O 0.10 2.05 11.17 69.83 0.78 2.83 16 7 N -0.38 -7.98 11.97 -56.83 -0.68 -8.67 16 8 C 0.04 0.76 11.68 86.04 1.01 1.76 16 9 C -0.27 -5.77 6.36 -19.54 -0.12 -5.89 16 10 C 0.60 14.66 7.80 86.52 0.67 15.33 16 11 O -0.56 -17.11 14.13 -4.26 -0.06 -17.17 16 12 N -0.69 -14.37 5.26 -443.33 -2.33 -16.70 16 13 C 0.13 3.00 4.34 45.61 0.20 3.20 16 14 H 0.10 2.41 7.46 -2.39 -0.02 2.39 16 15 C -0.14 -4.11 7.44 31.21 0.23 -3.87 16 16 C -0.11 -3.23 3.63 -10.27 -0.04 -3.27 16 17 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 18 C 0.16 6.12 6.10 86.38 0.53 6.65 16 19 N -0.74 -37.90 5.60 -343.46 -1.92 -39.83 16 20 C -0.24 -13.71 9.99 84.03 0.84 -12.87 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 23 N -0.97 -60.06 13.06 21.65 0.28 -59.77 16 24 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 C -0.12 -2.39 7.38 31.12 0.23 -2.16 16 29 C 0.11 2.68 10.38 85.65 0.89 3.57 16 30 N -0.33 -7.81 12.50 -56.25 -0.70 -8.51 16 31 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.23 0.79 8.06 -2.91 -0.02 0.77 16 35 H 0.23 2.34 7.77 -2.91 -0.02 2.32 16 36 H 0.41 6.57 7.95 -92.70 -0.74 5.83 16 37 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.08 2.54 7.90 -2.39 -0.02 2.52 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.02 0.77 7.85 -2.39 -0.02 0.75 16 41 H 0.37 20.22 7.67 -92.71 -0.71 19.51 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.11 2.03 8.10 -2.39 -0.02 2.01 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.18 4.48 7.80 -2.91 -0.02 4.46 16 Total: -1.00 -80.02 388.76 2.93 -77.09 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.40 Total: 27.70 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 7.41 Total: 1.19 kcal Atomic # 7 Polarization: -133.49 SS G_CDS: -6.82 Total: -140.32 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.72 Total: -14.34 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -80.02 2.93 -77.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571139938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.323 kcal (2) G-P(sol) polarization free energy of solvation -80.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds