Wall clock time and date at job start Wed Apr 1 2020 04:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46488 * 120.00308 * 2 1 4 4 C 1.52997 * 109.47429 * 270.00220 * 3 2 1 5 5 H 1.08998 * 109.47373 * 305.00053 * 4 3 2 6 6 O 1.42898 * 109.47292 * 64.99904 * 4 3 2 7 7 C 1.53001 * 109.47325 * 185.00042 * 4 3 2 8 8 N 1.46507 * 109.47190 * 180.02562 * 7 4 3 9 9 C 1.36934 * 120.00181 * 179.72538 * 8 7 4 10 10 H 1.08003 * 119.99671 * 0.27425 * 9 8 7 11 11 C 1.38806 * 119.99989 * 180.27413 * 9 8 7 12 12 N 1.31615 * 120.00148 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00045 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47126 * 89.99785 * 13 11 9 15 15 H 1.48498 * 109.46958 * 210.00028 * 13 11 9 16 16 H 1.48507 * 109.46989 * 329.99647 * 13 11 9 17 17 C 1.34779 * 119.99572 * 180.02562 * 2 1 3 18 18 O 1.21576 * 120.00047 * 175.50183 * 17 2 1 19 19 C 1.47665 * 120.00021 * 355.49415 * 17 2 1 20 20 C 1.40230 * 120.49479 * 40.73791 * 19 17 2 21 21 C 1.38028 * 118.35201 * 179.70720 * 20 19 17 22 22 C 1.39156 * 119.25863 * 0.58529 * 21 20 19 23 23 N 1.39485 * 119.53078 * 179.69816 * 22 21 20 24 24 C 1.37229 * 126.49520 * 184.69304 * 23 22 21 25 25 C 1.34596 * 106.82117 * 179.84234 * 24 23 22 26 26 N 1.34173 * 108.23581 * 0.42163 * 25 24 23 27 27 C 1.30454 * 109.38466 * 359.72732 * 26 25 24 28 28 N 1.32437 * 120.93657 * 359.67648 * 22 21 20 29 29 C 1.31637 * 121.80891 * 0.02562 * 28 22 21 30 30 H 1.09000 * 109.47077 * 95.16833 * 1 2 3 31 31 H 1.08998 * 109.47056 * 215.17223 * 1 2 3 32 32 H 1.09004 * 109.46721 * 335.16648 * 1 2 3 33 33 H 1.08999 * 109.47314 * 149.99956 * 3 2 1 34 34 H 1.08998 * 109.47225 * 30.00248 * 3 2 1 35 35 H 0.96703 * 114.00477 * 60.00016 * 6 4 3 36 36 H 1.09001 * 109.47287 * 60.00088 * 7 4 3 37 37 H 1.08998 * 109.47007 * 299.99339 * 7 4 3 38 38 H 0.97007 * 119.99448 * 359.97438 * 8 7 4 39 39 H 0.97003 * 120.00347 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.82629 * 359.97280 * 20 19 17 41 41 H 1.07998 * 120.36901 * 180.27632 * 21 20 19 42 42 H 1.08001 * 126.59345 * 359.95798 * 24 23 22 43 43 H 1.08001 * 125.87742 * 180.15608 * 25 24 23 44 44 H 1.08003 * 125.72540 * 179.97438 * 27 26 25 45 45 H 1.07987 * 119.68307 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 -1.4424 5 1 2.9642 0.9131 -1.9816 6 8 1.2061 1.9936 -2.0813 7 6 3.3239 2.9680 -1.4442 8 7 3.5676 3.3913 -2.8255 9 6 4.3234 4.5051 -3.0771 10 1 4.7436 5.0690 -2.2573 11 6 4.5495 4.9094 -4.3855 12 7 4.0379 4.2219 -5.3845 13 14 5.5812 6.4284 -4.7288 14 1 7.0072 6.0377 -4.8656 15 1 5.1196 7.0661 -5.9879 16 1 5.4366 7.3891 -3.6055 17 6 2.1388 -1.1673 -0.0005 18 8 3.3518 -1.1690 -0.0831 19 6 1.4038 -2.4441 0.0994 20 6 0.2044 -2.6315 -0.6024 21 6 -0.4429 -3.8447 -0.4820 22 6 0.1045 -4.8295 0.3347 23 7 -0.5481 -6.0552 0.4655 24 6 -0.1881 -7.0871 1.2955 25 6 -1.0879 -8.0703 1.1075 26 7 -1.9701 -7.6609 0.1831 27 6 -1.6585 -6.4565 -0.2093 28 7 1.2367 -4.6196 0.9891 29 6 1.8896 -3.4801 0.8982 30 1 -0.3633 -0.0926 -1.0235 31 1 -0.3633 -0.8400 0.5920 32 1 -0.3633 0.9327 0.4316 33 1 3.1499 1.1382 0.5138 34 1 1.6085 2.0283 0.5139 35 1 0.6956 2.6950 -1.6542 36 1 4.2747 2.7519 -0.9570 37 1 2.8122 3.7653 -0.9053 38 1 3.1904 2.8846 -3.5617 39 1 4.1961 4.5042 -6.2989 40 1 -0.2007 -1.8477 -1.2253 41 1 -1.3665 -4.0257 -1.0116 42 1 0.6542 -7.1060 1.9712 43 1 -1.0957 -9.0259 1.6107 44 1 -2.1925 -5.8757 -0.9469 45 1 2.8097 -3.3458 1.4472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571585995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:32 Heat of formation + Delta-G solvation = 55.444536 kcal Electronic energy + Delta-G solvation = -28883.253870 eV Core-core repulsion = 24710.582481 eV Total energy + Delta-G solvation = -4172.671389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.85767 -41.13732 -39.61253 -37.55174 -35.60437 -34.72614 -34.04580 -33.37676 -31.47937 -30.91835 -29.86182 -29.41774 -27.17747 -26.08502 -24.62002 -24.49601 -22.87403 -21.82064 -21.41477 -21.23942 -20.15563 -19.35625 -17.80277 -17.20121 -17.15353 -16.56436 -16.33495 -16.11022 -15.85081 -15.56790 -15.06036 -14.63111 -14.48842 -14.38754 -14.33549 -14.25460 -14.06497 -13.81996 -13.69581 -13.21291 -13.06543 -12.94391 -12.68887 -12.50829 -12.10667 -11.65093 -11.24167 -10.96270 -10.84270 -10.77192 -10.65722 -10.63071 -10.55183 -10.23025 -10.12613 -9.85893 -9.71861 -9.34212 -8.99141 -8.91055 -8.69918 -6.93548 -5.76089 -3.05716 -0.15850 0.49679 1.56937 1.87175 2.41638 2.62207 2.64539 3.16318 3.43009 3.47614 3.49592 3.60277 3.89336 3.99578 4.13929 4.18446 4.30184 4.53061 4.58417 4.69773 4.72790 4.88573 4.92622 4.94936 5.03362 5.08569 5.16317 5.22878 5.30403 5.40496 5.53255 5.59171 5.61571 5.65056 5.73463 5.92633 6.15632 6.17598 6.28985 6.50237 6.55991 6.69052 6.99648 7.12406 7.46578 7.67394 7.81528 7.95272 8.41967 9.53524 10.11087 10.46779 11.46229 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.001757 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.458269 B =15928.577490 C =16106.188246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.598 5.598 3 C 0.087 3.913 4 C 0.086 3.914 5 H 0.102 0.898 6 O -0.551 6.551 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.244 4.244 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.561 3.439 18 O -0.521 6.521 19 C -0.186 4.186 20 C -0.018 4.018 21 C -0.185 4.185 22 C 0.362 3.638 23 N -0.413 5.413 24 C -0.024 4.024 25 C -0.030 4.030 26 N -0.477 5.477 27 C 0.195 3.805 28 N -0.500 5.500 29 C 0.190 3.810 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.367 0.633 36 H 0.027 0.973 37 H 0.019 0.981 38 H 0.389 0.611 39 H 0.255 0.745 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.184 0.816 43 H 0.178 0.822 44 H 0.214 0.786 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.442 -18.732 16.553 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.330 5.330 3 C -0.036 4.036 4 C 0.025 3.975 5 H 0.119 0.881 6 O -0.355 6.355 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.375 4.375 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.348 3.652 18 O -0.397 6.397 19 C -0.192 4.192 20 C -0.044 4.044 21 C -0.207 4.207 22 C 0.134 3.866 23 N -0.096 5.096 24 C -0.153 4.153 25 C -0.174 4.174 26 N -0.193 5.193 27 C -0.086 4.086 28 N -0.211 5.211 29 C 0.031 3.969 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.213 0.787 36 H 0.045 0.955 37 H 0.037 0.963 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.178 0.822 41 H 0.169 0.831 42 H 0.201 0.799 43 H 0.195 0.805 44 H 0.230 0.770 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.805 -20.160 16.389 29.421 hybrid contribution 0.650 2.245 -0.349 2.363 sum -13.156 -17.914 16.040 27.409 Atomic orbital electron populations 1.22133 0.79354 1.03235 1.02154 1.47605 1.07157 1.05713 1.72558 1.22348 0.98408 0.83910 0.98892 1.22552 0.85238 0.98313 0.91376 0.88052 1.86610 1.32308 1.59031 1.57523 1.21212 0.96366 0.92826 0.89829 1.42229 1.61986 1.32016 1.00733 1.19218 1.23945 1.02474 0.91848 0.91254 1.24760 1.01145 0.99394 0.95582 1.69680 1.49059 1.40783 0.98254 0.86183 0.80010 0.82594 0.77332 1.21682 1.21742 1.20783 1.17931 0.87002 0.83053 0.77216 1.90872 1.13169 1.86848 1.48793 1.21004 0.97683 0.97317 1.03220 1.22033 0.91446 0.96556 0.94391 1.21521 1.03476 0.93347 1.02379 1.18374 0.90176 0.84879 0.93189 1.43155 1.22789 1.11241 1.32419 1.23008 1.03853 0.88289 1.00144 1.22448 0.94027 1.00595 1.00301 1.70349 1.26631 1.09334 1.13013 1.25429 0.88591 0.93856 1.00724 1.67090 1.06815 1.23973 1.23257 1.22725 0.96860 0.84807 0.92551 0.91341 0.91431 0.90428 0.88631 0.89757 0.78666 0.95488 0.96285 0.77677 0.93494 0.82152 0.83136 0.79923 0.80530 0.76980 0.80541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 8.56 59.85 0.51 0.98 16 2 N -0.60 -6.04 2.84 -182.77 -0.52 -6.55 16 3 C 0.09 1.00 5.07 -4.05 -0.02 0.98 16 4 C 0.09 1.33 3.30 -26.73 -0.09 1.24 16 5 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 6 O -0.55 -8.31 12.64 -35.23 -0.45 -8.76 16 7 C 0.13 2.44 5.92 -4.04 -0.02 2.42 16 8 N -0.72 -18.52 5.49 -59.91 -0.33 -18.85 16 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 10 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 11 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 12 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 13 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 C 0.56 6.65 7.34 -12.41 -0.09 6.56 16 18 O -0.52 -8.26 16.57 5.30 0.09 -8.17 16 19 C -0.19 -1.71 5.18 -104.81 -0.54 -2.25 16 20 C -0.02 -0.12 7.73 -38.91 -0.30 -0.42 16 21 C -0.19 -1.13 9.48 -39.32 -0.37 -1.50 16 22 C 0.36 3.04 7.49 -154.51 -1.16 1.88 16 23 N -0.41 -3.46 2.98 -63.81 -0.19 -3.65 16 24 C -0.02 -0.20 11.16 -16.42 -0.18 -0.38 16 25 C -0.03 -0.25 11.85 -17.82 -0.21 -0.46 16 26 N -0.48 -4.64 11.24 -14.45 -0.16 -4.81 16 27 C 0.20 1.49 11.88 -89.54 -1.06 0.42 16 28 N -0.50 -4.73 9.87 -11.99 -0.12 -4.84 16 29 C 0.19 1.73 10.81 -17.15 -0.19 1.54 16 30 H 0.07 0.42 6.86 -51.93 -0.36 0.07 16 31 H 0.07 0.33 5.97 -51.93 -0.31 0.02 16 32 H 0.08 0.39 7.83 -51.93 -0.41 -0.02 16 33 H 0.10 1.19 7.49 -51.93 -0.39 0.80 16 34 H 0.08 0.74 7.86 -51.93 -0.41 0.33 16 35 H 0.37 4.28 9.05 45.56 0.41 4.69 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.39 10.75 7.54 -40.82 -0.31 10.44 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.16 0.83 5.54 -52.49 -0.29 0.54 16 41 H 0.15 0.45 6.75 -52.49 -0.35 0.10 16 42 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.21 0.77 7.05 -52.48 -0.37 0.40 16 45 H 0.18 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -37.67 383.51 -9.03 -46.70 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.86 Total: 10.00 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -3.98 Total: 3.51 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.59 Total: -66.55 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.36 Total: -16.93 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.67 -9.03 -46.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571585995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.146 kcal (2) G-P(sol) polarization free energy of solvation -37.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds