Wall clock time and date at job start Wed Apr 1 2020 04:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46488 * 120.00308 * 2 1 4 4 C 1.52997 * 109.47429 * 270.00220 * 3 2 1 5 5 H 1.08998 * 109.47373 * 305.00053 * 4 3 2 6 6 O 1.42898 * 109.47292 * 64.99904 * 4 3 2 7 7 C 1.53001 * 109.47325 * 185.00042 * 4 3 2 8 8 N 1.46507 * 109.47190 * 180.02562 * 7 4 3 9 9 C 1.36934 * 120.00181 * 179.72538 * 8 7 4 10 10 H 1.08003 * 119.99671 * 0.27425 * 9 8 7 11 11 C 1.38806 * 119.99989 * 180.27413 * 9 8 7 12 12 N 1.31615 * 120.00148 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00045 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47126 * 89.99785 * 13 11 9 15 15 H 1.48498 * 109.46958 * 210.00028 * 13 11 9 16 16 H 1.48507 * 109.46989 * 329.99647 * 13 11 9 17 17 C 1.34779 * 119.99572 * 180.02562 * 2 1 3 18 18 O 1.21576 * 120.00047 * 175.50183 * 17 2 1 19 19 C 1.47665 * 120.00021 * 355.49415 * 17 2 1 20 20 C 1.40230 * 120.49479 * 40.73791 * 19 17 2 21 21 C 1.38028 * 118.35201 * 179.70720 * 20 19 17 22 22 C 1.39156 * 119.25863 * 0.58529 * 21 20 19 23 23 N 1.39485 * 119.53078 * 179.69816 * 22 21 20 24 24 C 1.37229 * 126.49520 * 184.69304 * 23 22 21 25 25 C 1.34596 * 106.82117 * 179.84234 * 24 23 22 26 26 N 1.34173 * 108.23581 * 0.42163 * 25 24 23 27 27 C 1.30454 * 109.38466 * 359.72732 * 26 25 24 28 28 N 1.32437 * 120.93657 * 359.67648 * 22 21 20 29 29 C 1.31637 * 121.80891 * 0.02562 * 28 22 21 30 30 H 1.09000 * 109.47077 * 95.16833 * 1 2 3 31 31 H 1.08998 * 109.47056 * 215.17223 * 1 2 3 32 32 H 1.09004 * 109.46721 * 335.16648 * 1 2 3 33 33 H 1.08999 * 109.47314 * 149.99956 * 3 2 1 34 34 H 1.08998 * 109.47225 * 30.00248 * 3 2 1 35 35 H 0.96703 * 114.00477 * 60.00016 * 6 4 3 36 36 H 1.09001 * 109.47287 * 60.00088 * 7 4 3 37 37 H 1.08998 * 109.47007 * 299.99339 * 7 4 3 38 38 H 0.97007 * 119.99448 * 359.97438 * 8 7 4 39 39 H 0.97003 * 120.00347 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.82629 * 359.97280 * 20 19 17 41 41 H 1.07998 * 120.36901 * 180.27632 * 21 20 19 42 42 H 1.08001 * 126.59345 * 359.95798 * 24 23 22 43 43 H 1.08001 * 125.87742 * 180.15608 * 25 24 23 44 44 H 1.08003 * 125.72540 * 179.97438 * 27 26 25 45 45 H 1.07987 * 119.68307 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 -1.4424 5 1 2.9642 0.9131 -1.9816 6 8 1.2061 1.9936 -2.0813 7 6 3.3239 2.9680 -1.4442 8 7 3.5676 3.3913 -2.8255 9 6 4.3234 4.5051 -3.0771 10 1 4.7436 5.0690 -2.2573 11 6 4.5495 4.9094 -4.3855 12 7 4.0379 4.2219 -5.3845 13 14 5.5812 6.4284 -4.7288 14 1 7.0072 6.0377 -4.8656 15 1 5.1196 7.0661 -5.9879 16 1 5.4366 7.3891 -3.6055 17 6 2.1388 -1.1673 -0.0005 18 8 3.3518 -1.1690 -0.0831 19 6 1.4038 -2.4441 0.0994 20 6 0.2044 -2.6315 -0.6024 21 6 -0.4429 -3.8447 -0.4820 22 6 0.1045 -4.8295 0.3347 23 7 -0.5481 -6.0552 0.4655 24 6 -0.1881 -7.0871 1.2955 25 6 -1.0879 -8.0703 1.1075 26 7 -1.9701 -7.6609 0.1831 27 6 -1.6585 -6.4565 -0.2093 28 7 1.2367 -4.6196 0.9891 29 6 1.8896 -3.4801 0.8982 30 1 -0.3633 -0.0926 -1.0235 31 1 -0.3633 -0.8400 0.5920 32 1 -0.3633 0.9327 0.4316 33 1 3.1499 1.1382 0.5138 34 1 1.6085 2.0283 0.5139 35 1 0.6956 2.6950 -1.6542 36 1 4.2747 2.7519 -0.9570 37 1 2.8122 3.7653 -0.9053 38 1 3.1904 2.8846 -3.5617 39 1 4.1961 4.5042 -6.2989 40 1 -0.2007 -1.8477 -1.2253 41 1 -1.3665 -4.0257 -1.0116 42 1 0.6542 -7.1060 1.9712 43 1 -1.0957 -9.0259 1.6107 44 1 -2.1925 -5.8757 -0.9469 45 1 2.8097 -3.3458 1.4472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571585995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:31 Heat of formation + Delta-G solvation = 28.168180 kcal Electronic energy + Delta-G solvation = -28884.436662 eV Core-core repulsion = 24710.582481 eV Total energy + Delta-G solvation = -4173.854181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.44002 -41.85660 -40.42557 -38.78401 -36.60064 -35.86420 -35.34642 -34.01569 -33.20516 -31.77155 -30.71495 -30.37124 -28.02300 -27.30459 -25.66574 -25.11253 -24.40074 -22.75552 -22.41581 -21.96679 -20.95653 -19.92332 -19.24278 -18.57500 -18.00276 -17.45021 -17.22873 -16.81185 -16.74290 -16.43888 -16.40501 -16.08554 -15.44739 -15.30005 -15.01216 -14.94793 -14.85374 -14.79459 -14.63784 -14.45640 -14.20649 -13.81022 -13.67153 -13.65944 -13.14959 -12.98882 -12.77225 -12.57809 -12.17788 -12.02109 -11.89854 -11.81816 -11.43308 -11.27816 -11.19540 -11.13008 -10.98669 -10.79357 -9.98241 -9.66656 -9.53944 -9.01575 -7.95220 -5.25008 -0.78606 -0.06045 0.95160 1.29663 1.46449 1.49021 1.57186 1.60549 1.84303 2.03769 2.52679 2.55504 3.01833 3.29465 3.36423 3.40499 3.50180 3.59970 3.64331 3.76342 3.82334 3.98288 4.08890 4.18342 4.27826 4.36149 4.43517 4.47364 4.51072 4.56615 4.65320 4.71064 4.72850 4.76611 4.92907 4.95529 5.05218 5.13432 5.22612 5.41943 5.47308 5.60715 6.00012 6.21118 6.25594 6.51087 6.88462 6.92034 6.96134 7.32231 8.08776 8.31221 9.28142 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.001757 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.458269 B =15928.577490 C =16106.188246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.594 5.594 3 C 0.097 3.903 4 C 0.104 3.896 5 H 0.064 0.936 6 O -0.559 6.559 7 C 0.122 3.878 8 N -0.741 5.741 9 C -0.248 4.248 10 H 0.078 0.922 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.976 3.024 14 H -0.289 1.289 15 H -0.295 1.295 16 H -0.266 1.266 17 C 0.557 3.443 18 O -0.574 6.574 19 C -0.195 4.195 20 C -0.009 4.009 21 C -0.170 4.170 22 C 0.350 3.650 23 N -0.419 5.419 24 C -0.039 4.039 25 C -0.038 4.038 26 N -0.512 5.512 27 C 0.202 3.798 28 N -0.518 5.518 29 C 0.182 3.818 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.385 0.615 36 H 0.022 0.978 37 H 0.042 0.958 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.182 0.818 41 H 0.190 0.810 42 H 0.189 0.811 43 H 0.194 0.806 44 H 0.251 0.749 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.578 -17.985 17.355 29.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.324 5.324 3 C -0.026 4.026 4 C 0.043 3.957 5 H 0.082 0.918 6 O -0.366 6.366 7 C -0.005 4.005 8 N -0.384 5.384 9 C -0.380 4.380 10 H 0.096 0.904 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.217 1.217 15 H -0.221 1.221 16 H -0.190 1.190 17 C 0.345 3.655 18 O -0.454 6.454 19 C -0.201 4.201 20 C -0.035 4.035 21 C -0.191 4.191 22 C 0.122 3.878 23 N -0.102 5.102 24 C -0.168 4.168 25 C -0.181 4.181 26 N -0.229 5.229 27 C -0.079 4.079 28 N -0.230 5.230 29 C 0.023 3.977 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.234 0.766 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.199 0.801 41 H 0.207 0.793 42 H 0.206 0.794 43 H 0.210 0.790 44 H 0.267 0.733 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.986 -19.408 17.265 30.501 hybrid contribution 1.241 1.955 -0.546 2.379 sum -14.745 -17.453 16.720 28.312 Atomic orbital electron populations 1.22433 0.76633 1.05281 1.03185 1.47686 1.08774 1.04637 1.71316 1.22156 0.99115 0.85519 0.95847 1.22166 0.84675 0.95300 0.93513 0.91830 1.86576 1.31865 1.59894 1.58279 1.21450 0.97154 0.95149 0.86781 1.42446 1.61729 1.31369 1.02820 1.19678 1.23286 1.02869 0.92171 0.90399 1.25628 1.03054 1.02741 0.95556 1.69848 1.51087 1.42744 0.98339 0.85102 0.77961 0.79205 0.77243 1.21677 1.22111 1.19024 1.18374 0.86556 0.84299 0.76252 1.90842 1.15521 1.87678 1.51354 1.20822 0.98743 0.96044 1.04528 1.22246 0.90267 0.97362 0.93620 1.21880 1.04210 0.91959 1.01068 1.18687 0.90111 0.85395 0.93601 1.43279 1.23081 1.11258 1.32599 1.23207 1.04309 0.88587 1.00719 1.22793 0.93786 1.01342 1.00172 1.70357 1.27714 1.10692 1.14165 1.26200 0.87922 0.93503 1.00293 1.67037 1.07714 1.24092 1.24182 1.22704 0.97034 0.84950 0.93059 0.90658 0.89661 0.88311 0.89962 0.85933 0.76628 0.96007 0.93989 0.79396 0.94050 0.80127 0.79331 0.79409 0.78953 0.73315 0.80803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 8.56 127.77 1.09 1.70 16 2 N -0.59 -10.97 2.84 -850.42 -2.41 -13.39 16 3 C 0.10 2.06 5.07 86.38 0.44 2.50 16 4 C 0.10 3.18 3.30 30.59 0.10 3.28 16 5 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 6 O -0.56 -15.97 12.64 -148.98 -1.88 -17.85 16 7 C 0.12 4.64 5.92 86.38 0.51 5.15 16 8 N -0.74 -38.11 5.49 -343.44 -1.89 -39.99 16 9 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 10 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 11 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 12 N -0.97 -60.60 13.06 21.65 0.28 -60.32 16 13 Si 0.98 46.38 29.55 68.60 2.03 48.40 16 14 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 15 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 17 C 0.56 13.09 7.34 86.73 0.64 13.73 16 18 O -0.57 -19.04 16.57 -3.96 -0.07 -19.10 16 19 C -0.20 -3.40 5.18 -19.99 -0.10 -3.51 16 20 C -0.01 -0.10 7.73 22.70 0.18 0.08 16 21 C -0.17 -1.52 9.48 22.44 0.21 -1.31 16 22 C 0.35 5.26 7.49 132.89 1.00 6.26 16 23 N -0.42 -6.35 2.98 -355.78 -1.06 -7.41 16 24 C -0.04 -0.63 11.16 83.01 0.93 0.30 16 25 C -0.04 -0.60 11.85 83.50 0.99 0.39 16 26 N -0.51 -9.31 11.24 -199.64 -2.24 -11.55 16 27 C 0.20 2.60 11.88 179.97 2.14 4.74 16 28 N -0.52 -9.58 9.87 -191.86 -1.89 -11.47 16 29 C 0.18 3.32 10.81 85.04 0.92 4.24 16 30 H 0.08 0.64 6.86 -2.39 -0.02 0.63 16 31 H 0.08 0.52 5.97 -2.39 -0.01 0.51 16 32 H 0.10 0.54 7.83 -2.38 -0.02 0.52 16 33 H 0.08 2.02 7.49 -2.39 -0.02 2.00 16 34 H 0.12 1.68 7.86 -2.39 -0.02 1.66 16 35 H 0.38 7.86 9.05 -74.06 -0.67 7.19 16 36 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.37 21.14 7.54 -92.70 -0.70 20.44 16 39 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.18 1.20 5.54 -2.91 -0.02 1.19 16 41 H 0.19 0.17 6.75 -2.91 -0.02 0.15 16 42 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.19 2.12 8.06 -2.91 -0.02 2.09 16 44 H 0.25 0.81 7.05 -2.91 -0.02 0.79 16 45 H 0.17 3.06 8.06 -2.92 -0.02 3.03 16 Total: -1.00 -84.59 383.51 0.90 -83.69 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.31 Total: 28.65 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 10.34 Total: 20.35 kcal Atomic # 7 Polarization: -134.92 SS G_CDS: -9.21 Total: -144.14 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.95 Total: -36.95 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -84.59 0.90 -83.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571585995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.858 kcal (2) G-P(sol) polarization free energy of solvation -84.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds