Wall clock time and date at job start Wed Apr 1 2020 04:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99718 * 2 1 4 4 C 1.53000 * 109.46991 * 90.00119 * 3 2 1 5 5 H 1.08999 * 109.47219 * 305.00017 * 4 3 2 6 6 O 1.42907 * 109.47434 * 64.99632 * 4 3 2 7 7 C 1.50700 * 109.46988 * 184.99792 * 4 3 2 8 8 C 1.38330 * 119.94285 * 279.99756 * 7 4 3 9 9 C 1.38292 * 120.24058 * 180.02562 * 8 7 4 10 10 C 1.38055 * 120.11393 * 0.02562 * 9 8 7 11 11 C 1.39271 * 119.88127 * 359.97438 * 10 9 8 12 12 C 1.48469 * 120.11730 * 179.97438 * 11 10 9 13 13 N 1.34044 * 126.67356 * 179.68680 * 12 11 10 14 14 N 1.28987 * 107.26916 * 179.83434 * 13 12 11 15 15 N 1.28735 * 108.94013 * 0.43503 * 14 13 12 16 16 H 0.97001 * 125.33851 * 179.71507 * 15 14 13 17 17 N 1.28866 * 109.31668 * 359.72617 * 15 14 13 18 18 C 1.38004 * 119.93877 * 100.02223 * 7 4 3 19 19 C 1.34773 * 120.00297 * 179.97438 * 2 1 3 20 20 O 1.21276 * 120.00236 * 179.97438 * 19 2 1 21 21 C 1.50696 * 119.99871 * 0.02562 * 19 2 1 22 22 C 1.53004 * 109.47285 * 179.97438 * 21 19 2 23 23 C 1.50696 * 109.47285 * 179.97438 * 22 21 19 24 24 H 1.08005 * 120.00044 * 359.97438 * 23 22 21 25 25 C 1.37883 * 120.00064 * 179.97438 * 23 22 21 26 26 N 1.31517 * 119.99973 * 179.97438 * 25 23 22 27 27 Si 1.86799 * 119.99812 * 0.02562 * 25 23 22 28 28 H 1.48492 * 109.47342 * 89.99663 * 27 25 23 29 29 H 1.48504 * 109.46634 * 209.99718 * 27 25 23 30 30 H 1.48501 * 109.47118 * 329.99193 * 27 25 23 31 31 H 1.08998 * 109.47237 * 90.00063 * 1 2 3 32 32 H 1.09010 * 109.47039 * 209.99866 * 1 2 3 33 33 H 1.08999 * 109.47357 * 329.99608 * 1 2 3 34 34 H 1.08993 * 109.47410 * 330.00029 * 3 2 1 35 35 H 1.08998 * 109.46683 * 209.99377 * 3 2 1 36 36 H 0.96701 * 113.99502 * 60.00076 * 6 4 3 37 37 H 1.08006 * 119.88051 * 0.04467 * 8 7 4 38 38 H 1.07997 * 119.94435 * 180.02562 * 9 8 7 39 39 H 1.08001 * 120.05763 * 179.70068 * 10 9 8 40 40 H 1.08000 * 120.06231 * 359.97438 * 18 7 4 41 41 H 1.09004 * 109.47181 * 299.99159 * 21 19 2 42 42 H 1.08997 * 109.47509 * 60.00055 * 21 19 2 43 43 H 1.09001 * 109.47063 * 299.99913 * 22 21 19 44 44 H 1.08998 * 109.47287 * 59.99644 * 22 21 19 45 45 H 0.96993 * 119.99769 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4425 5 1 1.5061 1.7549 1.9816 6 8 3.3208 0.7725 2.0815 7 6 3.0961 3.0731 1.4443 8 6 4.4526 3.1962 1.2028 9 6 5.0497 4.4436 1.2036 10 6 4.2940 5.5731 1.4461 11 6 2.9279 5.4548 1.6898 12 6 2.1102 6.6661 1.9519 13 7 0.7926 6.7054 2.1948 14 7 0.4727 7.9423 2.3725 15 7 1.5270 8.6694 2.2420 16 1 1.5559 9.6355 2.3241 17 7 2.5378 7.9125 1.9851 18 6 2.3312 4.1958 1.6874 19 6 2.1389 -1.1671 0.0005 20 8 3.3516 -1.1671 0.0001 21 6 1.3854 -2.4722 0.0005 22 6 2.3797 -3.6352 0.0005 23 6 1.6262 -4.9403 0.0012 24 1 0.5462 -4.9403 0.0019 25 6 2.3157 -6.1344 0.0007 26 7 1.6581 -7.2733 0.0018 27 14 4.1837 -6.1343 0.0001 28 1 4.6792 -6.1344 1.3999 29 1 4.6784 -7.3467 -0.7003 30 1 4.6784 -4.9217 -0.7001 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8901 0.5139 33 1 -0.3634 0.8899 0.5139 34 1 1.6084 2.0284 -0.5138 35 1 3.1498 1.1384 -0.5137 36 1 4.1836 0.6811 1.6543 37 1 5.0474 2.3150 1.0127 38 1 6.1090 4.5342 1.0140 39 1 4.7621 6.5464 1.4512 40 1 1.2723 4.0986 1.8758 41 1 0.7585 -2.5299 0.8904 42 1 0.7591 -2.5303 -0.8896 43 1 3.0063 -3.5774 -0.8895 44 1 3.0064 -3.5774 0.8904 45 1 2.1431 -8.1133 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604720931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:17 Heat of formation + Delta-G solvation = 62.787081 kcal Electronic energy + Delta-G solvation = -28946.905246 eV Core-core repulsion = 24774.552253 eV Total energy + Delta-G solvation = -4172.352993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.89313 -40.27985 -39.31396 -37.09449 -35.04817 -34.81203 -33.97127 -33.46197 -32.12313 -31.27591 -30.93345 -28.94779 -26.60350 -25.98726 -25.12879 -24.92261 -23.53037 -22.50512 -21.15148 -20.75617 -19.62712 -18.72008 -17.80106 -17.57810 -17.16961 -16.46496 -16.26660 -16.12371 -15.70496 -15.52187 -15.02539 -14.67596 -14.18840 -14.15162 -13.99609 -13.85678 -13.47240 -13.16965 -12.96192 -12.80601 -12.52406 -12.35177 -12.28941 -12.19089 -11.88598 -11.82487 -11.76023 -11.58139 -11.43595 -11.30533 -11.17643 -10.92352 -10.40333 -10.08662 -9.97406 -9.74096 -9.31167 -9.17564 -9.10903 -9.05191 -8.47250 -8.38237 -5.99091 -3.97345 0.28033 0.75692 0.92648 1.78571 1.92797 3.10610 3.21803 3.24300 3.39262 3.41182 3.47339 3.58012 3.74104 4.36796 4.39695 4.50156 4.54566 4.64641 4.75088 4.83507 4.91805 4.98487 5.01155 5.14594 5.19154 5.30279 5.36543 5.42646 5.45594 5.55053 5.58835 5.76768 5.78703 5.88148 5.97915 6.02405 6.12203 6.17019 6.19003 6.44895 6.63535 6.75509 7.42247 7.49214 7.60992 7.67255 7.69800 7.84165 8.53980 8.68612 9.04269 9.64185 11.13808 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.001948 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.167939 B =14371.564757 C =15204.084017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.624 5.624 3 C 0.089 3.911 4 C 0.132 3.868 5 H 0.108 0.892 6 O -0.540 6.540 7 C -0.113 4.113 8 C -0.086 4.086 9 C -0.117 4.117 10 C -0.080 4.080 11 C -0.021 4.021 12 C 0.222 3.778 13 N -0.267 5.267 14 N -0.048 5.048 15 N -0.228 5.228 16 H 0.476 0.524 17 N -0.295 5.295 18 C -0.064 4.064 19 C 0.519 3.481 20 O -0.537 6.537 21 C -0.120 4.120 22 C 0.002 3.998 23 C -0.523 4.523 24 H 0.072 0.928 25 C 0.068 3.932 26 N -0.904 5.904 27 Si 0.878 3.122 28 H -0.277 1.277 29 H -0.289 1.289 30 H -0.261 1.261 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.378 0.622 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.022 0.978 44 H 0.020 0.980 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 35.087 2.538 35.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.035 4.035 4 C 0.071 3.929 5 H 0.126 0.874 6 O -0.346 6.346 7 C -0.115 4.115 8 C -0.105 4.105 9 C -0.135 4.135 10 C -0.100 4.100 11 C -0.024 4.024 12 C -0.058 4.058 13 N -0.140 5.140 14 N -0.043 5.043 15 N -0.074 5.074 16 H 0.330 0.670 17 N -0.147 5.147 18 C -0.085 4.085 19 C 0.309 3.691 20 O -0.413 6.413 21 C -0.160 4.160 22 C -0.036 4.036 23 C -0.561 4.561 24 H 0.090 0.910 25 C -0.133 4.133 26 N -0.543 5.543 27 Si 0.705 3.295 28 H -0.202 1.202 29 H -0.215 1.215 30 H -0.186 1.186 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.227 0.773 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.040 0.960 44 H 0.038 0.962 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.848 35.139 3.056 35.281 hybrid contribution 1.630 0.601 -0.372 1.777 sum 2.478 35.740 2.683 35.926 Atomic orbital electron populations 1.21792 0.79527 1.03318 1.01778 1.47898 1.06803 1.05487 1.75683 1.22064 0.99065 0.86336 0.96019 1.21260 0.93715 0.83570 0.94320 0.87421 1.86658 1.29720 1.62025 1.56214 1.20527 0.94464 0.96007 1.00456 1.21184 0.94304 0.98139 0.96862 1.21075 1.00313 0.91789 1.00351 1.21169 0.92004 0.99600 0.97269 1.17169 0.91962 0.87758 1.05534 1.23713 0.89524 0.91462 1.01065 1.76112 1.11743 1.09256 1.16864 1.78944 1.13153 0.97364 1.14843 1.47741 1.02395 1.13034 1.44221 0.66996 1.74916 1.15695 1.02788 1.21262 1.20991 1.00535 0.90093 0.96832 1.21444 0.88319 0.85468 0.73826 1.90576 1.14473 1.87314 1.48936 1.21677 1.00229 0.91081 1.02998 1.19367 0.94460 0.92162 0.97588 1.21127 0.94958 0.88917 1.51135 0.90992 1.24977 0.98470 0.95462 0.94392 1.69916 1.35789 0.97399 1.51228 0.86785 0.86270 0.77697 0.78725 1.20244 1.21548 1.18551 0.92700 0.90226 0.91600 0.89974 0.89499 0.77299 0.85230 0.84932 0.84969 0.84477 0.89662 0.89842 0.95953 0.96205 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.24 59.84 0.61 1.42 16 2 N -0.62 -8.41 2.86 -181.58 -0.52 -8.93 16 3 C 0.09 0.99 5.09 -4.04 -0.02 0.97 16 4 C 0.13 1.41 3.45 -27.88 -0.10 1.32 16 5 H 0.11 1.12 8.00 -51.93 -0.42 0.70 16 6 O -0.54 -7.42 12.05 -42.98 -0.52 -7.94 16 7 C -0.11 -1.04 4.97 -104.67 -0.52 -1.56 16 8 C -0.09 -0.72 9.31 -39.53 -0.37 -1.08 16 9 C -0.12 -0.85 10.03 -39.63 -0.40 -1.24 16 10 C -0.08 -0.61 9.70 -39.26 -0.38 -1.00 16 11 C -0.02 -0.19 5.88 -104.89 -0.62 -0.80 16 12 C 0.22 2.08 7.94 -156.31 -1.24 0.84 16 13 N -0.27 -2.71 12.23 32.16 0.39 -2.32 16 14 N -0.05 -0.40 13.47 60.35 0.81 0.42 16 15 N -0.23 -1.23 7.90 60.35 0.48 -0.75 16 16 H 0.48 0.23 8.96 -340.37 -3.05 -2.82 16 17 N -0.30 -2.28 12.08 32.17 0.39 -1.89 16 18 C -0.06 -0.58 9.32 -39.26 -0.37 -0.94 16 19 C 0.52 9.40 7.30 -10.99 -0.08 9.32 16 20 O -0.54 -11.23 14.54 -2.18 -0.03 -11.26 16 21 C -0.12 -2.37 4.19 -27.88 -0.12 -2.48 16 22 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 23 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 24 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 25 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 26 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 27 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 28 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.85 6.44 -51.92 -0.33 0.51 16 33 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.09 1.06 7.42 -51.93 -0.39 0.67 16 36 H 0.38 4.65 7.20 45.56 0.33 4.98 16 37 H 0.13 0.97 6.78 -52.48 -0.36 0.61 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.83 7.88 -52.49 -0.41 0.42 16 40 H 0.14 1.15 7.86 -52.49 -0.41 0.73 16 41 H 0.09 1.59 7.40 -51.93 -0.38 1.20 16 42 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 43 H 0.02 0.58 7.16 -51.93 -0.37 0.21 16 44 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -37.61 382.57 -9.12 -46.73 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.88 Total: -1.68 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -4.11 Total: -8.78 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 2.33 Total: -40.91 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.55 Total: -19.20 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.61 -9.12 -46.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604720931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.518 kcal (2) G-P(sol) polarization free energy of solvation -37.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds