Wall clock time and date at job start Wed Apr 1 2020 04:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99718 * 2 1 4 4 C 1.53000 * 109.46991 * 90.00119 * 3 2 1 5 5 H 1.08999 * 109.47219 * 305.00017 * 4 3 2 6 6 O 1.42907 * 109.47434 * 64.99632 * 4 3 2 7 7 C 1.50700 * 109.46988 * 184.99792 * 4 3 2 8 8 C 1.38330 * 119.94285 * 279.99756 * 7 4 3 9 9 C 1.38292 * 120.24058 * 180.02562 * 8 7 4 10 10 C 1.38055 * 120.11393 * 0.02562 * 9 8 7 11 11 C 1.39271 * 119.88127 * 359.97438 * 10 9 8 12 12 C 1.48469 * 120.11730 * 179.97438 * 11 10 9 13 13 N 1.34044 * 126.67356 * 179.68680 * 12 11 10 14 14 N 1.28987 * 107.26916 * 179.83434 * 13 12 11 15 15 N 1.28735 * 108.94013 * 0.43503 * 14 13 12 16 16 H 0.97001 * 125.33851 * 179.71507 * 15 14 13 17 17 N 1.28866 * 109.31668 * 359.72617 * 15 14 13 18 18 C 1.38004 * 119.93877 * 100.02223 * 7 4 3 19 19 C 1.34773 * 120.00297 * 179.97438 * 2 1 3 20 20 O 1.21276 * 120.00236 * 179.97438 * 19 2 1 21 21 C 1.50696 * 119.99871 * 0.02562 * 19 2 1 22 22 C 1.53004 * 109.47285 * 179.97438 * 21 19 2 23 23 C 1.50696 * 109.47285 * 179.97438 * 22 21 19 24 24 H 1.08005 * 120.00044 * 359.97438 * 23 22 21 25 25 C 1.37883 * 120.00064 * 179.97438 * 23 22 21 26 26 N 1.31517 * 119.99973 * 179.97438 * 25 23 22 27 27 Si 1.86799 * 119.99812 * 0.02562 * 25 23 22 28 28 H 1.48492 * 109.47342 * 89.99663 * 27 25 23 29 29 H 1.48504 * 109.46634 * 209.99718 * 27 25 23 30 30 H 1.48501 * 109.47118 * 329.99193 * 27 25 23 31 31 H 1.08998 * 109.47237 * 90.00063 * 1 2 3 32 32 H 1.09010 * 109.47039 * 209.99866 * 1 2 3 33 33 H 1.08999 * 109.47357 * 329.99608 * 1 2 3 34 34 H 1.08993 * 109.47410 * 330.00029 * 3 2 1 35 35 H 1.08998 * 109.46683 * 209.99377 * 3 2 1 36 36 H 0.96701 * 113.99502 * 60.00076 * 6 4 3 37 37 H 1.08006 * 119.88051 * 0.04467 * 8 7 4 38 38 H 1.07997 * 119.94435 * 180.02562 * 9 8 7 39 39 H 1.08001 * 120.05763 * 179.70068 * 10 9 8 40 40 H 1.08000 * 120.06231 * 359.97438 * 18 7 4 41 41 H 1.09004 * 109.47181 * 299.99159 * 21 19 2 42 42 H 1.08997 * 109.47509 * 60.00055 * 21 19 2 43 43 H 1.09001 * 109.47063 * 299.99913 * 22 21 19 44 44 H 1.08998 * 109.47287 * 59.99644 * 22 21 19 45 45 H 0.96993 * 119.99769 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4425 5 1 1.5061 1.7549 1.9816 6 8 3.3208 0.7725 2.0815 7 6 3.0961 3.0731 1.4443 8 6 4.4526 3.1962 1.2028 9 6 5.0497 4.4436 1.2036 10 6 4.2940 5.5731 1.4461 11 6 2.9279 5.4548 1.6898 12 6 2.1102 6.6661 1.9519 13 7 0.7926 6.7054 2.1948 14 7 0.4727 7.9423 2.3725 15 7 1.5270 8.6694 2.2420 16 1 1.5559 9.6355 2.3241 17 7 2.5378 7.9125 1.9851 18 6 2.3312 4.1958 1.6874 19 6 2.1389 -1.1671 0.0005 20 8 3.3516 -1.1671 0.0001 21 6 1.3854 -2.4722 0.0005 22 6 2.3797 -3.6352 0.0005 23 6 1.6262 -4.9403 0.0012 24 1 0.5462 -4.9403 0.0019 25 6 2.3157 -6.1344 0.0007 26 7 1.6581 -7.2733 0.0018 27 14 4.1837 -6.1343 0.0001 28 1 4.6792 -6.1344 1.3999 29 1 4.6784 -7.3467 -0.7003 30 1 4.6784 -4.9217 -0.7001 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8901 0.5139 33 1 -0.3634 0.8899 0.5139 34 1 1.6084 2.0284 -0.5138 35 1 3.1498 1.1384 -0.5137 36 1 4.1836 0.6811 1.6543 37 1 5.0474 2.3150 1.0127 38 1 6.1090 4.5342 1.0140 39 1 4.7621 6.5464 1.4512 40 1 1.2723 4.0986 1.8758 41 1 0.7585 -2.5299 0.8904 42 1 0.7591 -2.5303 -0.8896 43 1 3.0063 -3.5774 -0.8895 44 1 3.0064 -3.5774 0.8904 45 1 2.1431 -8.1133 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604720931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:16 Heat of formation + Delta-G solvation = 35.415959 kcal Electronic energy + Delta-G solvation = -28948.092146 eV Core-core repulsion = 24774.552253 eV Total energy + Delta-G solvation = -4173.539894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.48293 -41.19296 -40.34588 -38.05465 -36.18778 -35.52235 -35.42400 -34.59748 -33.36060 -32.74694 -31.56248 -29.96023 -28.02400 -27.18941 -25.84620 -25.54112 -24.61312 -23.11930 -22.72015 -21.68055 -20.18515 -20.07075 -19.10697 -18.55230 -18.16246 -17.68556 -17.33325 -16.99894 -16.59108 -16.51977 -16.20916 -16.05659 -15.48125 -15.18346 -14.82373 -14.78223 -14.52084 -14.40226 -14.28068 -13.95762 -13.67479 -13.41149 -13.40446 -13.13394 -12.94170 -12.85446 -12.67403 -12.53974 -12.41086 -12.22913 -12.08243 -11.98754 -11.93718 -11.86294 -11.72061 -11.36677 -11.31157 -10.75668 -10.59676 -9.95336 -9.71944 -9.40822 -8.29230 -6.31927 -0.32431 0.15493 0.31050 1.28201 1.35653 1.36651 1.40507 1.52113 1.78294 2.12402 2.37340 2.62763 2.74476 3.06460 3.12531 3.53339 3.64284 3.80601 3.91379 4.00627 4.11040 4.16539 4.22815 4.36635 4.37350 4.39537 4.43444 4.50676 4.52740 4.62979 4.75476 4.82046 4.92224 4.97311 4.99984 5.09365 5.35853 5.37151 5.41496 5.48760 5.51949 5.59554 5.63464 5.65148 5.85753 6.25943 6.43780 6.73114 6.74474 7.09354 7.33194 7.33522 8.86461 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.001948 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.167939 B =14371.564757 C =15204.084017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.614 5.614 3 C 0.090 3.910 4 C 0.137 3.863 5 H 0.111 0.889 6 O -0.564 6.564 7 C -0.118 4.118 8 C -0.094 4.094 9 C -0.114 4.114 10 C -0.078 4.078 11 C -0.032 4.032 12 C 0.210 3.790 13 N -0.294 5.294 14 N -0.058 5.058 15 N -0.200 5.200 16 H 0.495 0.505 17 N -0.294 5.294 18 C -0.068 4.068 19 C 0.517 3.483 20 O -0.573 6.573 21 C -0.115 4.115 22 C 0.008 3.992 23 C -0.529 4.529 24 H 0.048 0.952 25 C 0.012 3.988 26 N -0.944 5.944 27 Si 0.940 3.060 28 H -0.270 1.270 29 H -0.279 1.279 30 H -0.259 1.259 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.381 0.619 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.011 0.989 44 H 0.007 0.993 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 37.811 2.395 37.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.346 5.346 3 C -0.033 4.033 4 C 0.077 3.923 5 H 0.129 0.871 6 O -0.371 6.371 7 C -0.119 4.119 8 C -0.113 4.113 9 C -0.132 4.132 10 C -0.098 4.098 11 C -0.035 4.035 12 C -0.070 4.070 13 N -0.166 5.166 14 N -0.053 5.053 15 N -0.051 5.051 16 H 0.354 0.646 17 N -0.146 5.146 18 C -0.088 4.088 19 C 0.307 3.693 20 O -0.452 6.452 21 C -0.155 4.155 22 C -0.030 4.030 23 C -0.567 4.567 24 H 0.066 0.934 25 C -0.185 4.185 26 N -0.585 5.585 27 Si 0.764 3.236 28 H -0.195 1.195 29 H -0.204 1.204 30 H -0.183 1.183 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.094 0.906 36 H 0.230 0.770 37 H 0.152 0.848 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.029 0.971 44 H 0.026 0.974 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.489 37.924 2.915 38.065 hybrid contribution 1.320 -0.103 -0.318 1.362 sum 2.809 37.821 2.598 38.014 Atomic orbital electron populations 1.22079 0.77308 1.04626 1.03253 1.47841 1.08226 1.04954 1.73626 1.22236 0.98883 0.85571 0.96655 1.21245 0.93519 0.83894 0.93684 0.87107 1.86621 1.30302 1.63114 1.57109 1.20327 0.94860 0.95092 1.01654 1.21352 0.94143 0.98955 0.96813 1.21335 1.01445 0.91052 0.99329 1.21375 0.91560 1.00430 0.96417 1.17303 0.92556 0.87676 1.05965 1.23837 0.89472 0.92052 1.01625 1.76086 1.12380 1.10130 1.18033 1.78882 1.13787 0.97239 1.15344 1.47806 1.01361 1.13869 1.42097 0.64637 1.74878 1.16093 1.02476 1.21174 1.21002 1.00691 0.90142 0.96993 1.21024 0.87743 0.86234 0.74301 1.90559 1.15691 1.87914 1.51042 1.21490 0.99219 0.90616 1.04165 1.19198 0.94952 0.92576 0.96268 1.21449 0.94260 0.90747 1.50230 0.93382 1.25827 1.03229 0.95214 0.94277 1.70030 1.37718 0.98129 1.52603 0.85802 0.80662 0.77988 0.79101 1.19481 1.20400 1.18325 0.91095 0.90796 0.88561 0.86982 0.90632 0.76984 0.84786 0.82590 0.83582 0.84308 0.88748 0.88563 0.97106 0.97411 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 10.24 127.77 1.31 2.55 16 2 N -0.61 -15.52 2.86 -846.78 -2.42 -17.94 16 3 C 0.09 1.83 5.09 86.38 0.44 2.27 16 4 C 0.14 2.76 3.45 29.85 0.10 2.86 16 5 H 0.11 2.13 8.00 -2.39 -0.02 2.11 16 6 O -0.56 -15.31 12.05 -141.58 -1.71 -17.02 16 7 C -0.12 -2.02 4.97 -19.90 -0.10 -2.12 16 8 C -0.09 -1.43 9.31 22.30 0.21 -1.22 16 9 C -0.11 -1.40 10.03 22.24 0.22 -1.18 16 10 C -0.08 -1.03 9.70 22.47 0.22 -0.82 16 11 C -0.03 -0.52 5.88 -20.04 -0.12 -0.64 16 12 C 0.21 3.66 7.94 137.38 1.09 4.75 16 13 N -0.29 -5.69 12.23 -52.18 -0.64 -6.32 16 14 N -0.06 -0.88 13.47 37.02 0.50 -0.38 16 15 N -0.20 -1.79 7.90 37.02 0.29 -1.50 16 16 H 0.49 -0.60 8.96 -347.54 -3.12 -3.71 16 17 N -0.29 -4.00 12.08 -52.13 -0.63 -4.63 16 18 C -0.07 -1.13 9.32 22.48 0.21 -0.93 16 19 C 0.52 18.40 7.30 87.66 0.64 19.04 16 20 O -0.57 -23.92 14.54 4.39 0.06 -23.85 16 21 C -0.12 -4.50 4.19 29.85 0.13 -4.38 16 22 C 0.01 0.41 3.33 29.85 0.10 0.50 16 23 C -0.53 -31.01 9.66 25.60 0.25 -30.77 16 24 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 25 C 0.01 0.72 5.47 84.66 0.46 1.19 16 26 N -0.94 -59.74 13.96 21.45 0.30 -59.44 16 27 Si 0.94 47.24 27.47 68.60 1.88 49.13 16 28 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 29 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 30 H -0.26 -12.84 6.54 99.48 0.65 -12.19 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.44 6.44 -2.38 -0.02 1.42 16 33 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 34 H 0.11 1.64 8.07 -2.39 -0.02 1.62 16 35 H 0.08 1.76 7.42 -2.39 -0.02 1.75 16 36 H 0.38 9.43 7.20 -74.06 -0.53 8.90 16 37 H 0.13 1.88 6.78 -2.91 -0.02 1.86 16 38 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 39 H 0.15 1.49 7.88 -2.91 -0.02 1.46 16 40 H 0.14 2.18 7.86 -2.91 -0.02 2.16 16 41 H 0.09 3.47 7.40 -2.38 -0.02 3.46 16 42 H 0.10 3.46 8.11 -2.39 -0.02 3.44 16 43 H 0.01 0.56 7.16 -2.39 -0.02 0.54 16 44 H 0.01 0.40 7.53 -2.39 -0.02 0.38 16 45 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -81.69 382.57 0.15 -81.54 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -2.65 Total: 9.32 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 5.16 Total: -8.89 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -2.60 Total: -90.22 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.64 Total: -40.87 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.88 Total: 49.13 kcal Total: -81.69 0.15 -81.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604720931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.955 kcal (2) G-P(sol) polarization free energy of solvation -81.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds