Wall clock time and date at job start Wed Apr 1 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47433 * 2 1 4 4 C 1.35309 * 125.86699 * 125.32280 * 3 2 1 5 5 C 1.35343 * 106.17297 * 180.11974 * 4 3 2 6 6 C 1.50705 * 126.75194 * 179.85160 * 5 4 3 7 7 N 1.46504 * 109.46942 * 94.71710 * 6 5 4 8 8 C 1.34776 * 119.99835 * 180.02562 * 7 6 5 9 9 O 1.21586 * 120.00194 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 N 1.33772 * 106.49797 * 359.59447 * 5 4 3 28 28 N 1.28630 * 108.88495 * 0.26094 * 27 5 4 29 29 H 1.09001 * 109.47468 * 300.00208 * 1 2 3 30 30 H 1.09005 * 109.47087 * 59.99609 * 1 2 3 31 31 H 1.08997 * 109.47488 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47468 * 239.99792 * 2 1 3 33 33 H 1.09005 * 109.47087 * 120.00391 * 2 1 3 34 34 H 1.08001 * 126.91525 * 359.97438 * 4 3 2 35 35 H 1.08997 * 109.46955 * 334.71545 * 6 5 4 36 36 H 1.08995 * 109.47053 * 214.71233 * 6 5 4 37 37 H 0.97005 * 119.99925 * 359.97438 * 7 6 5 38 38 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 40 40 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8804 1.9173 0.8947 5 6 3.0545 3.2073 0.5241 6 6 3.9240 4.2320 1.2062 7 7 5.2360 4.2700 0.5554 8 6 6.1844 5.1182 1.0000 9 8 5.9510 5.8521 1.9409 10 7 7.3917 5.1528 0.4017 11 6 8.4224 6.0751 0.8846 12 6 9.6679 5.9174 0.0510 13 6 10.6379 5.0045 0.4240 14 6 11.7824 4.8573 -0.3379 15 6 11.9573 5.6174 -1.4779 16 6 10.9881 6.5387 -1.8518 17 8 11.1600 7.2914 -2.9684 18 6 12.3449 7.1839 -3.6027 19 1 13.0742 6.4621 -3.2658 20 6 12.6270 8.0001 -4.6875 21 7 11.7388 8.8796 -5.0975 22 14 14.2689 7.8517 -5.5659 23 1 14.4202 6.4757 -6.1033 24 1 14.3228 8.8286 -6.6830 25 1 15.3693 8.1332 -4.6092 26 6 9.8398 6.6847 -1.0840 27 7 2.3074 3.3924 -0.5700 28 7 1.7060 2.2916 -0.8547 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3359 1.4172 1.7366 35 1 4.0465 3.9639 2.2555 36 1 3.4543 5.2129 1.1342 37 1 5.4224 3.6842 -0.1950 38 1 7.5777 4.5675 -0.3492 39 1 8.6512 5.8508 1.9264 40 1 8.0594 7.0996 0.8047 41 1 10.5011 4.4055 1.3122 42 1 12.5381 4.1441 -0.0439 43 1 12.8491 5.4983 -2.0754 44 1 11.9364 9.4509 -5.8562 45 1 9.0825 7.3977 -1.3743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645947180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:54 Heat of formation + Delta-G solvation = 69.188856 kcal Electronic energy + Delta-G solvation = -27815.017724 eV Core-core repulsion = 23642.942333 eV Total energy + Delta-G solvation = -4172.075391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.70978 -39.93955 -39.04635 -36.88638 -36.23673 -34.97125 -34.34659 -32.32840 -31.81314 -31.33848 -30.53558 -29.11452 -27.07864 -25.60722 -25.20848 -24.81265 -22.33763 -21.70494 -21.32355 -20.93828 -20.74994 -18.68346 -17.94160 -17.53979 -17.01516 -16.92232 -16.17862 -15.73560 -15.31188 -15.14222 -15.03999 -14.67059 -14.59824 -14.45953 -14.19320 -13.63515 -13.61717 -13.57726 -13.34351 -13.15785 -12.82326 -12.60436 -12.36252 -12.25827 -12.08430 -11.89766 -11.65754 -11.35810 -11.19746 -10.91393 -10.80805 -10.68951 -10.57466 -10.48292 -10.25167 -9.68712 -9.40032 -9.29131 -8.87636 -8.74161 -8.23457 -7.31382 -6.47373 -4.07132 1.11824 1.79770 1.86111 2.03870 2.28668 3.03412 3.11500 3.13481 3.15632 3.28776 3.74236 3.93874 3.97346 4.14795 4.32470 4.34597 4.41750 4.60027 4.61234 4.85341 4.90908 4.96202 5.08671 5.11278 5.28870 5.32930 5.43944 5.56420 5.59364 5.70946 5.79698 5.86969 5.96182 6.09180 6.09939 6.27243 6.32958 6.57337 6.59523 6.83774 6.93141 7.01932 7.21277 7.28712 7.37339 7.72596 7.96370 8.05641 8.09962 8.64978 8.97614 9.66513 10.70236 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.001692 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.173800 B =16542.510723 C =17386.610490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 N -0.293 5.293 4 C -0.029 4.029 5 C -0.041 4.041 6 C 0.230 3.770 7 N -0.745 5.745 8 C 0.706 3.294 9 O -0.594 6.594 10 N -0.736 5.736 11 C 0.187 3.813 12 C -0.073 4.073 13 C -0.194 4.194 14 C -0.077 4.077 15 C -0.226 4.226 16 C 0.150 3.850 17 O -0.176 6.176 18 C -0.394 4.394 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.169 4.169 27 N -0.250 5.250 28 N -0.080 5.080 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.193 0.807 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.397 0.603 38 H 0.399 0.601 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.271 0.729 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.896 -20.167 12.627 29.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.086 5.086 4 C -0.181 4.181 5 C -0.179 4.179 6 C 0.104 3.896 7 N -0.402 5.402 8 C 0.406 3.594 9 O -0.473 6.473 10 N -0.390 5.390 11 C 0.064 3.936 12 C -0.074 4.074 13 C -0.214 4.214 14 C -0.095 4.095 15 C -0.246 4.246 16 C 0.096 3.904 17 O -0.079 6.079 18 C -0.470 4.470 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.189 4.189 27 N -0.118 5.118 28 N -0.060 5.060 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.210 0.790 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.231 0.769 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.081 0.919 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.129 -18.814 11.934 28.724 hybrid contribution 1.695 -1.184 -0.263 2.084 sum -16.434 -19.998 11.671 28.394 Atomic orbital electron populations 1.22089 0.92472 1.03893 1.04186 1.22159 0.97141 0.76223 1.05493 1.47556 1.30147 1.12194 1.18706 1.23509 0.99384 0.95403 0.99787 1.21981 1.03710 0.94587 0.97628 1.19137 0.79656 0.96336 0.94460 1.45058 1.13104 1.43843 1.38184 1.15864 0.80287 0.80721 0.82505 1.90921 1.80740 1.45046 1.30591 1.45248 1.12215 1.44263 1.37301 1.20001 0.83918 0.93173 0.96524 1.19290 0.95196 0.97424 0.95461 1.20479 0.96019 1.02817 1.02087 1.20738 0.96570 0.97896 0.94330 1.21233 1.01949 1.01133 1.00256 1.19333 0.93281 0.90593 0.87201 1.83984 1.36034 1.56237 1.31672 1.21273 0.91890 1.21609 1.12265 0.89105 1.25292 0.99442 0.95084 0.96624 1.70025 1.34204 1.20044 1.25209 0.85781 0.80264 0.78510 0.78876 1.19522 1.20249 1.19472 1.20111 0.98414 1.04181 0.96190 1.75168 1.07890 1.15826 1.12873 1.78340 1.20551 0.92742 1.14380 0.91647 0.90532 0.89722 0.88049 0.87476 0.78953 0.89744 0.89657 0.76918 0.76729 0.91071 0.90956 0.87502 0.87342 0.85515 0.91892 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.43 10.04 37.16 0.37 -0.06 16 2 C 0.11 0.29 7.17 -4.04 -0.03 0.26 16 3 N -0.29 -2.02 3.44 -61.26 -0.21 -2.23 16 4 C -0.03 -0.18 11.50 -17.05 -0.20 -0.38 16 5 C -0.04 -0.38 6.61 -82.78 -0.55 -0.93 16 6 C 0.23 2.24 6.23 -5.19 -0.03 2.21 16 7 N -0.75 -8.02 5.55 -66.41 -0.37 -8.38 16 8 C 0.71 9.91 8.57 -86.91 -0.74 9.17 16 9 O -0.59 -10.45 16.34 5.29 0.09 -10.36 16 10 N -0.74 -9.84 5.55 -66.42 -0.37 -10.21 16 11 C 0.19 2.79 5.80 -5.19 -0.03 2.76 16 12 C -0.07 -1.24 5.25 -104.65 -0.55 -1.79 16 13 C -0.19 -3.16 9.70 -39.53 -0.38 -3.54 16 14 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 15 C -0.23 -4.73 9.17 -39.40 -0.36 -5.09 16 16 C 0.15 3.51 6.65 -39.11 -0.26 3.25 16 17 O -0.18 -4.95 9.76 0.05 0.00 -4.95 16 18 C -0.39 -10.86 9.49 30.89 0.29 -10.57 16 19 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 22 Si 0.94 20.29 29.55 -169.99 -5.02 15.26 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 C -0.17 -3.45 9.65 -39.39 -0.38 -3.83 16 27 N -0.25 -3.06 12.41 33.29 0.41 -2.64 16 28 N -0.08 -0.87 12.91 60.35 0.78 -0.09 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.11 -0.03 8.07 -51.93 -0.42 -0.45 16 34 H 0.19 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 3.67 8.48 -40.82 -0.35 3.33 16 38 H 0.40 4.76 8.48 -40.82 -0.35 4.42 16 39 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 41 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -35.84 393.27 -7.23 -43.07 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.88 Total: 8.20 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -3.34 Total: -9.27 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 1.00 Total: -47.89 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.09 Total: -15.31 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.84 -7.23 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645947180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.263 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds