Wall clock time and date at job start Wed Apr 1 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47433 * 2 1 4 4 C 1.35309 * 125.86699 * 125.32280 * 3 2 1 5 5 C 1.35343 * 106.17297 * 180.11974 * 4 3 2 6 6 C 1.50705 * 126.75194 * 179.85160 * 5 4 3 7 7 N 1.46504 * 109.46942 * 94.71710 * 6 5 4 8 8 C 1.34776 * 119.99835 * 180.02562 * 7 6 5 9 9 O 1.21586 * 120.00194 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 N 1.33772 * 106.49797 * 359.59447 * 5 4 3 28 28 N 1.28630 * 108.88495 * 0.26094 * 27 5 4 29 29 H 1.09001 * 109.47468 * 300.00208 * 1 2 3 30 30 H 1.09005 * 109.47087 * 59.99609 * 1 2 3 31 31 H 1.08997 * 109.47488 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47468 * 239.99792 * 2 1 3 33 33 H 1.09005 * 109.47087 * 120.00391 * 2 1 3 34 34 H 1.08001 * 126.91525 * 359.97438 * 4 3 2 35 35 H 1.08997 * 109.46955 * 334.71545 * 6 5 4 36 36 H 1.08995 * 109.47053 * 214.71233 * 6 5 4 37 37 H 0.97005 * 119.99925 * 359.97438 * 7 6 5 38 38 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 40 40 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 41 41 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 42 42 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 43 43 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 44 44 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8804 1.9173 0.8947 5 6 3.0545 3.2073 0.5241 6 6 3.9240 4.2320 1.2062 7 7 5.2360 4.2700 0.5554 8 6 6.1844 5.1182 1.0000 9 8 5.9510 5.8521 1.9409 10 7 7.3917 5.1528 0.4017 11 6 8.4224 6.0751 0.8846 12 6 9.6679 5.9174 0.0510 13 6 10.6379 5.0045 0.4240 14 6 11.7824 4.8573 -0.3379 15 6 11.9573 5.6174 -1.4779 16 6 10.9881 6.5387 -1.8518 17 8 11.1600 7.2914 -2.9684 18 6 12.3449 7.1839 -3.6027 19 1 13.0742 6.4621 -3.2658 20 6 12.6270 8.0001 -4.6875 21 7 11.7388 8.8796 -5.0975 22 14 14.2689 7.8517 -5.5659 23 1 14.4202 6.4757 -6.1033 24 1 14.3228 8.8286 -6.6830 25 1 15.3693 8.1332 -4.6092 26 6 9.8398 6.6847 -1.0840 27 7 2.3074 3.3924 -0.5700 28 7 1.7060 2.2916 -0.8547 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3359 1.4172 1.7366 35 1 4.0465 3.9639 2.2555 36 1 3.4543 5.2129 1.1342 37 1 5.4224 3.6842 -0.1950 38 1 7.5777 4.5675 -0.3492 39 1 8.6512 5.8508 1.9264 40 1 8.0594 7.0996 0.8047 41 1 10.5011 4.4055 1.3122 42 1 12.5381 4.1441 -0.0439 43 1 12.8491 5.4983 -2.0754 44 1 11.9364 9.4509 -5.8562 45 1 9.0825 7.3977 -1.3743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645947180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:54 Heat of formation + Delta-G solvation = 41.929417 kcal Electronic energy + Delta-G solvation = -27816.199782 eV Core-core repulsion = 23642.942333 eV Total energy + Delta-G solvation = -4173.257449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.32112 -41.14912 -40.63575 -38.50783 -36.86418 -35.84451 -35.55817 -34.27997 -32.72415 -31.91367 -31.62896 -30.71582 -28.08502 -27.34734 -26.19283 -25.58330 -23.25083 -22.92600 -22.46846 -21.97863 -21.82162 -19.90289 -19.31030 -18.77355 -18.25260 -17.53259 -17.18345 -16.88237 -16.65553 -16.28735 -16.10680 -15.85095 -15.64932 -15.60771 -15.34092 -15.20771 -14.93890 -14.46618 -14.23835 -14.08716 -13.88066 -13.65280 -13.61359 -13.29024 -13.05270 -12.99420 -12.69932 -12.50892 -12.37596 -12.35823 -12.25285 -12.13678 -11.80555 -11.50519 -11.19951 -11.08271 -10.79622 -10.39032 -10.34840 -9.78446 -9.74397 -9.01869 -8.46065 -6.14960 0.37431 0.59080 0.72553 1.19086 1.35721 1.46379 1.46784 1.52138 2.02378 2.17553 2.18687 2.83554 3.14358 3.21802 3.39574 3.48444 3.63628 3.84650 3.86844 3.97701 4.11005 4.11952 4.29947 4.33287 4.40544 4.46624 4.55547 4.56650 4.71782 4.74708 4.75818 4.78009 4.95303 5.03747 5.04552 5.12349 5.23551 5.27721 5.40606 5.45683 5.64128 5.65807 5.72502 5.74107 5.95827 6.02642 6.19378 6.98391 7.04524 7.45031 7.56183 7.79365 8.76847 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.001692 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.173800 B =16542.510723 C =17386.610490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 N -0.285 5.285 4 C -0.003 4.003 5 C -0.060 4.060 6 C 0.234 3.766 7 N -0.731 5.731 8 C 0.707 3.293 9 O -0.630 6.630 10 N -0.730 5.730 11 C 0.194 3.806 12 C -0.058 4.058 13 C -0.165 4.165 14 C -0.070 4.070 15 C -0.234 4.234 16 C 0.110 3.890 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.104 0.896 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.257 1.257 26 C -0.182 4.182 27 N -0.297 5.297 28 N -0.115 5.115 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.147 0.853 34 H 0.239 0.761 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.406 0.594 38 H 0.407 0.593 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.120 0.880 44 H 0.272 0.728 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.947 -24.302 15.463 32.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 N -0.078 5.078 4 C -0.156 4.156 5 C -0.199 4.199 6 C 0.109 3.891 7 N -0.387 5.387 8 C 0.406 3.594 9 O -0.512 6.512 10 N -0.385 5.385 11 C 0.070 3.930 12 C -0.059 4.059 13 C -0.184 4.184 14 C -0.088 4.088 15 C -0.254 4.254 16 C 0.060 3.940 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.122 0.878 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.181 1.181 26 C -0.202 4.202 27 N -0.164 5.164 28 N -0.095 5.095 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.165 0.835 34 H 0.255 0.745 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.241 0.759 38 H 0.242 0.758 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.223 -23.032 14.779 32.335 hybrid contribution 1.207 -0.143 -0.815 1.463 sum -16.017 -23.175 13.965 31.443 Atomic orbital electron populations 1.22074 0.92734 1.04994 1.02572 1.22637 0.96988 0.74248 1.07930 1.47960 1.29256 1.12971 1.17637 1.24106 0.97629 0.94204 0.99692 1.21998 1.04288 0.95918 0.97743 1.19129 0.78876 0.95675 0.95437 1.44971 1.12798 1.42891 1.38045 1.15936 0.80594 0.80706 0.82133 1.90900 1.81377 1.46587 1.32323 1.45064 1.11933 1.44034 1.37499 1.19878 0.83231 0.93012 0.96872 1.19468 0.96289 0.96286 0.93866 1.21016 0.94221 1.00936 1.02216 1.21175 0.97789 0.97299 0.92488 1.21377 1.01133 1.01224 1.01648 1.19874 0.95232 0.91596 0.87276 1.83950 1.36894 1.59003 1.34232 1.21799 0.92365 1.22114 1.12701 0.87846 1.26604 1.03711 0.94491 0.97337 1.70186 1.37035 1.22131 1.26611 0.84647 0.74973 0.79059 0.77539 1.18012 1.19901 1.18105 1.20236 0.97521 1.04991 0.97409 1.75101 1.09365 1.17224 1.14692 1.78265 1.21775 0.93342 1.16096 0.92378 0.93003 0.87234 0.87098 0.83537 0.74488 0.87785 0.91925 0.75877 0.75753 0.89245 0.92365 0.83102 0.83212 0.86178 0.91920 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.04 71.98 0.72 0.14 16 2 C 0.10 0.22 7.17 86.38 0.62 0.84 16 3 N -0.28 -3.36 3.44 -347.73 -1.20 -4.56 16 4 C 0.00 -0.03 11.50 83.49 0.96 0.93 16 5 C -0.06 -1.06 6.61 41.60 0.28 -0.78 16 6 C 0.23 4.32 6.23 85.63 0.53 4.86 16 7 N -0.73 -14.67 5.55 -482.29 -2.68 -17.35 16 8 C 0.71 18.77 8.57 179.05 1.53 20.31 16 9 O -0.63 -21.50 16.34 -3.99 -0.07 -21.57 16 10 N -0.73 -18.10 5.55 -482.30 -2.68 -20.78 16 11 C 0.19 5.38 5.80 85.63 0.50 5.87 16 12 C -0.06 -1.86 5.25 -19.88 -0.10 -1.96 16 13 C -0.17 -4.59 9.70 22.30 0.22 -4.37 16 14 C -0.07 -2.15 10.04 22.25 0.22 -1.93 16 15 C -0.23 -9.65 9.17 22.39 0.21 -9.44 16 16 C 0.11 5.36 6.65 22.58 0.15 5.51 16 17 O -0.23 -14.02 9.76 -22.74 -0.22 -14.24 16 18 C -0.41 -23.88 9.49 67.92 0.64 -23.24 16 19 H 0.10 5.40 5.21 -2.91 -0.02 5.38 16 20 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 21 N -0.92 -56.95 13.67 21.61 0.30 -56.66 16 22 Si 1.02 42.61 29.55 68.60 2.03 44.64 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 26 C -0.18 -7.57 9.65 22.39 0.22 -7.35 16 27 N -0.30 -7.36 12.41 -48.60 -0.60 -7.96 16 28 N -0.12 -2.48 12.91 37.02 0.48 -2.00 16 29 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.05 0.45 8.12 -2.38 -0.02 0.43 16 31 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.15 -0.79 8.07 -2.38 -0.02 -0.81 16 34 H 0.24 -0.07 8.06 -2.91 -0.02 -0.10 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.41 6.84 8.48 -92.70 -0.79 6.05 16 38 H 0.41 8.83 8.48 -92.71 -0.79 8.05 16 39 H 0.09 2.23 8.09 -2.39 -0.02 2.21 16 40 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 41 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 42 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -86.21 393.27 2.00 -84.21 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.52 Total: 27.77 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 7.16 Total: -11.51 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -6.38 Total: -109.31 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.29 Total: -35.80 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -86.21 2.00 -84.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645947180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.144 kcal (2) G-P(sol) polarization free energy of solvation -86.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds