Wall clock time and date at job start Wed Apr 1 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40062 * 125.86949 * 2 1 4 4 C 1.30221 * 109.72506 * 180.02562 * 3 2 1 5 5 C 1.41236 * 108.46966 * 0.02562 * 4 3 2 6 6 C 1.36326 * 125.86895 * 180.02562 * 2 1 3 7 7 N 1.33132 * 134.64230 * 359.96050 * 6 2 1 8 8 C 1.31497 * 120.63778 * 180.02562 * 7 6 2 9 9 C 1.50693 * 118.69063 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47406 * 89.99755 * 9 8 7 11 11 C 1.50702 * 109.47261 * 179.97438 * 10 9 8 12 12 O 1.21273 * 120.00113 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99710 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99602 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46602 * 184.79227 * 14 13 11 16 16 C 1.50694 * 115.55031 * 294.81113 * 15 14 13 17 17 H 1.08008 * 119.99906 * 95.20931 * 16 15 14 18 18 C 1.37882 * 120.00284 * 274.93190 * 16 15 14 19 19 N 1.31509 * 119.99919 * 355.42076 * 18 16 15 20 20 Si 1.86800 * 120.00242 * 175.41794 * 18 16 15 21 21 H 1.48502 * 109.47002 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47091 * 119.99801 * 20 18 16 23 23 H 1.48497 * 109.47138 * 240.00628 * 20 18 16 24 24 C 1.53003 * 117.49932 * 80.48439 * 15 14 13 25 25 C 1.52998 * 117.49502 * 149.14583 * 15 14 13 26 26 N 1.32153 * 122.61717 * 0.28027 * 8 7 6 27 27 C 1.32666 * 121.22913 * 359.40338 * 26 8 7 28 28 O 1.35377 * 120.79388 * 180.27923 * 27 26 8 29 29 H 1.08996 * 109.47212 * 269.96152 * 1 2 3 30 30 H 1.09004 * 109.47013 * 29.95890 * 1 2 3 31 31 H 1.08999 * 109.47391 * 149.95623 * 1 2 3 32 32 H 1.07997 * 125.76918 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47106 * 330.00037 * 9 8 7 34 34 H 1.09002 * 109.46978 * 210.00063 * 9 8 7 35 35 H 1.09003 * 109.46759 * 60.00069 * 10 9 8 36 36 H 1.08998 * 109.47657 * 300.00460 * 10 9 8 37 37 H 0.97004 * 119.99767 * 359.97438 * 13 11 10 38 38 H 1.08993 * 109.47604 * 64.79661 * 14 13 11 39 39 H 1.09000 * 109.47101 * 304.78675 * 14 13 11 40 40 H 0.97004 * 120.00506 * 184.99920 * 19 18 16 41 41 H 1.08997 * 117.49622 * 214.99831 * 24 15 14 42 42 H 1.09000 * 117.49928 * 0.02562 * 24 15 14 43 43 H 1.08996 * 117.50254 * 359.97148 * 25 15 14 44 44 H 1.09005 * 117.49689 * 144.97447 * 25 15 14 45 45 H 0.96695 * 113.99768 * 270.33244 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2856 1.1350 0.0000 4 6 3.5365 0.7729 -0.0005 5 6 3.5938 -0.6383 -0.0015 6 6 2.2637 -1.1047 -0.0005 7 7 2.0442 -2.4178 -0.0004 8 6 3.0497 -3.2653 -0.0005 9 6 2.7509 -4.7423 -0.0010 10 6 2.6500 -5.2418 -1.4436 11 6 2.3518 -6.7190 -1.4441 12 8 2.2314 -7.3137 -0.3941 13 7 2.2189 -7.3793 -2.6116 14 6 1.9285 -8.8152 -2.6120 15 6 1.9465 -9.3386 -4.0497 16 6 0.8711 -8.7930 -4.9535 17 1 1.0789 -7.9449 -5.5891 18 6 -0.3763 -9.3801 -4.9732 19 7 -0.6014 -10.4697 -4.2721 20 14 -1.7466 -8.6278 -5.9958 21 1 -1.2399 -7.4148 -6.6867 22 1 -2.2101 -9.6141 -7.0046 23 1 -2.8789 -8.2565 -5.1097 24 6 3.3101 -9.6386 -4.6753 25 6 2.3848 -10.7881 -4.2682 26 7 4.3117 -2.8733 0.0048 27 6 4.6321 -1.5859 -0.0013 28 8 5.9280 -1.1942 -0.0015 29 1 -0.3633 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3634 -0.8896 -0.5145 32 1 4.3865 1.4391 -0.0011 33 1 1.8064 -4.9221 0.5126 34 1 3.5511 -5.2750 0.5128 35 1 3.5944 -5.0620 -1.9573 36 1 1.8498 -4.7091 -1.9575 37 1 2.3149 -6.9035 -3.4515 38 1 0.9449 -8.9871 -2.1751 39 1 2.6834 -9.3387 -2.0254 40 1 -1.4558 -10.9237 -4.3421 41 1 3.4294 -9.4413 -5.7406 42 1 4.1945 -9.4635 -4.0626 43 1 2.6608 -11.3686 -3.3880 44 1 1.8950 -11.3472 -5.0656 45 1 6.3046 -1.0808 0.8818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647176518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:01 Heat of formation + Delta-G solvation = 62.694172 kcal Electronic energy + Delta-G solvation = -28899.559390 eV Core-core repulsion = 24727.202368 eV Total energy + Delta-G solvation = -4172.357022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51430 -39.80559 -39.09689 -38.08177 -36.69689 -34.11591 -33.51064 -33.27839 -32.79702 -31.96624 -30.12791 -27.53046 -27.01652 -25.65536 -24.72561 -23.99761 -22.25999 -21.46367 -21.13430 -19.71892 -19.21495 -19.10283 -18.87812 -17.62390 -16.83836 -16.66515 -16.11975 -15.93317 -15.28371 -15.15396 -14.97550 -14.69712 -14.66846 -14.25488 -13.90106 -13.74974 -13.26143 -13.11134 -13.08211 -12.79372 -12.55685 -12.48496 -11.94696 -11.79133 -11.74758 -11.55646 -11.32670 -11.08171 -11.01262 -10.95318 -10.92189 -10.52670 -10.23487 -9.69393 -9.62778 -9.53859 -9.28954 -9.11062 -9.03822 -8.50244 -8.26512 -8.08627 -6.08462 -4.18229 0.04434 0.80327 1.60361 1.91281 2.85818 3.19538 3.23861 3.24570 3.33154 3.34936 3.47232 3.64364 3.94775 4.17029 4.33018 4.34900 4.49869 4.79388 4.82425 4.89812 5.01013 5.11259 5.17801 5.19568 5.26584 5.41205 5.60148 5.69412 5.77903 5.89341 6.04411 6.09773 6.16088 6.34616 6.48120 6.57250 6.63954 6.71524 6.82819 6.87970 6.98276 7.12537 7.27917 7.40045 7.53523 7.77930 7.80450 8.28363 8.33543 8.82608 8.86889 9.49048 10.98717 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.002286 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.755436 B =12244.812481 C =13507.840035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.381 5.381 3 N -0.243 5.243 4 C 0.109 3.891 5 C -0.308 4.308 6 C 0.357 3.643 7 N -0.534 5.534 8 C 0.401 3.599 9 C -0.035 4.035 10 C -0.132 4.132 11 C 0.508 3.492 12 O -0.557 6.557 13 N -0.703 5.703 14 C 0.163 3.837 15 C 0.023 3.977 16 C -0.500 4.500 17 H 0.060 0.940 18 C 0.073 3.927 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.211 4.211 25 C -0.143 4.143 26 N -0.556 5.556 27 C 0.454 3.546 28 O -0.470 6.470 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.203 0.797 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.401 0.599 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 21.800 9.917 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.170 5.170 3 N -0.057 5.057 4 C -0.088 4.088 5 C -0.323 4.323 6 C 0.110 3.890 7 N -0.257 5.257 8 C 0.131 3.869 9 C -0.075 4.075 10 C -0.174 4.174 11 C 0.293 3.707 12 O -0.437 6.437 13 N -0.351 5.351 14 C 0.040 3.960 15 C 0.022 3.978 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.510 5.510 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.248 4.248 25 C -0.181 4.181 26 N -0.283 5.283 27 C 0.256 3.744 28 O -0.278 6.278 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.220 0.780 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 6.730 21.381 10.172 24.615 hybrid contribution -0.009 0.838 -0.624 1.045 sum 6.721 22.219 9.549 25.101 Atomic orbital electron populations 1.21959 0.72409 1.05089 1.03814 1.48360 1.06730 0.99999 1.61961 1.77000 1.02050 1.07130 1.19475 1.23799 0.95251 0.92659 0.97114 1.20348 0.95248 0.96239 1.20439 1.19072 0.88117 0.88366 0.93476 1.67433 1.37183 0.99187 1.21851 1.23027 0.81315 0.96655 0.85921 1.20238 1.05501 0.83871 0.97847 1.21544 1.04391 0.94350 0.97100 1.20273 0.77443 0.88635 0.84328 1.90663 1.52022 1.69606 1.31418 1.45987 1.70009 1.11323 1.07794 1.21001 0.99574 0.77994 0.97446 1.19054 0.91718 0.95536 0.91446 1.20396 0.94435 1.15713 1.23187 0.92163 1.24991 0.98294 0.94858 0.94963 1.69997 1.24046 1.17309 1.39684 0.86582 0.82313 0.79415 0.79957 1.19726 1.21042 1.20925 1.23019 0.94286 1.07577 0.99927 1.22468 1.02121 0.92022 1.01459 1.67975 1.22513 1.17002 1.20849 1.18954 0.83944 0.86110 0.85386 1.84637 1.21206 1.87557 1.34412 0.90523 0.88925 0.88579 0.78017 0.87761 0.87629 0.88704 0.88688 0.76459 0.91432 0.94099 0.92915 0.90426 0.91679 0.91807 0.89546 0.72602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.77 11.47 59.84 0.69 1.45 16 2 N -0.38 -3.99 4.05 -67.25 -0.27 -4.26 16 3 N -0.24 -2.40 12.45 30.81 0.38 -2.02 16 4 C 0.11 0.89 12.05 -17.10 -0.21 0.68 16 5 C -0.31 -3.19 6.19 -106.85 -0.66 -3.85 16 6 C 0.36 4.29 8.04 -156.25 -1.26 3.04 16 7 N -0.53 -6.92 10.35 -10.10 -0.10 -7.03 16 8 C 0.40 5.10 6.88 -157.14 -1.08 4.02 16 9 C -0.04 -0.45 4.91 -27.89 -0.14 -0.58 16 10 C -0.13 -1.76 5.68 -27.88 -0.16 -1.92 16 11 C 0.51 8.97 7.83 -10.98 -0.09 8.89 16 12 O -0.56 -11.65 15.98 5.56 0.09 -11.56 16 13 N -0.70 -13.23 5.48 -60.29 -0.33 -13.56 16 14 C 0.16 3.63 5.50 -4.04 -0.02 3.61 16 15 C 0.02 0.54 1.47 -155.66 -0.23 0.31 16 16 C -0.50 -12.74 8.59 -34.44 -0.30 -13.04 16 17 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 18 C 0.07 1.92 5.43 -17.82 -0.10 1.83 16 19 N -0.87 -24.10 12.65 55.43 0.70 -23.40 16 20 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 25 C -0.14 -3.26 9.14 -26.69 -0.24 -3.50 16 26 N -0.56 -6.82 10.33 -10.53 -0.11 -6.93 16 27 C 0.45 4.66 7.90 -16.31 -0.13 4.53 16 28 O -0.47 -3.38 13.58 -17.82 -0.24 -3.62 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.20 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.10 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.11 1.35 8.10 -51.93 -0.42 0.93 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.40 6.95 8.33 -40.82 -0.34 6.61 16 38 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 39 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 41 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 45 H 0.41 0.69 9.06 45.56 0.41 1.11 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -33.84 394.07 -8.54 -42.38 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.38 Total: 7.84 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -4.18 Total: 0.81 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.27 Total: -57.20 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.15 Total: -15.19 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.84 -8.54 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647176518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.074 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds