Wall clock time and date at job start Wed Apr 1 2020 03:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47144 * 2 1 4 4 N 1.28716 * 125.87070 * 269.97485 * 3 2 1 5 5 N 1.28626 * 110.17977 * 180.02562 * 4 3 2 6 6 C 1.33779 * 108.88754 * 359.76887 * 5 4 3 7 7 C 1.35315 * 125.86753 * 89.99871 * 3 2 1 8 8 C 1.50705 * 126.91101 * 359.94472 * 7 3 2 9 9 N 1.46504 * 109.46942 * 275.00120 * 8 7 3 10 10 C 1.34776 * 119.99835 * 180.02562 * 9 8 7 11 11 O 1.21586 * 120.00194 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99844 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00093 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47192 * 180.02562 * 13 12 10 15 15 C 1.38328 * 119.96230 * 269.98024 * 14 13 12 16 16 C 1.38281 * 120.13505 * 180.02562 * 15 14 13 17 17 C 1.38120 * 120.06679 * 359.68445 * 16 15 14 18 18 C 1.38852 * 119.93490 * 0.58817 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.70368 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46814 * 90.00164 * 24 22 20 26 26 H 1.48501 * 109.47378 * 210.00272 * 24 22 20 27 27 H 1.48503 * 109.47143 * 330.00397 * 24 22 20 28 28 C 1.38073 * 119.96534 * 89.99825 * 14 13 12 29 29 H 1.08998 * 109.47438 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47120 * 300.00066 * 1 2 3 31 31 H 1.09007 * 109.47168 * 59.99909 * 1 2 3 32 32 H 1.08998 * 109.47120 * 239.99934 * 2 1 3 33 33 H 1.08995 * 109.46931 * 119.99773 * 2 1 3 34 34 H 1.07997 * 126.75466 * 180.23623 * 6 5 4 35 35 H 1.08997 * 109.46955 * 154.99955 * 8 7 3 36 36 H 1.08995 * 109.47053 * 34.99643 * 8 7 3 37 37 H 0.97005 * 119.99925 * 359.97438 * 9 8 7 38 38 H 0.97004 * 119.99718 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.46490 * 60.00223 * 13 12 10 40 40 H 1.08992 * 109.46880 * 300.00477 * 13 12 10 41 41 H 1.08001 * 119.93314 * 0.02562 * 15 14 13 42 42 H 1.07993 * 119.96315 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.03256 * 180.31909 * 17 16 15 44 44 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 45 45 H 1.07996 * 120.03547 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2702 2.0922 -1.0430 5 7 2.6833 3.2595 -0.6952 6 6 2.7032 3.3316 0.6405 7 6 2.2826 2.1287 1.0966 8 6 2.1327 1.7084 2.5360 9 7 0.7488 1.9236 2.9660 10 6 0.3791 1.6171 4.2253 11 8 1.1939 1.1618 5.0044 12 7 -0.8940 1.8155 4.6210 13 6 -1.2961 1.4820 5.9897 14 6 -2.7586 1.7952 6.1741 15 6 -3.1467 3.0485 6.6124 16 6 -4.4876 3.3397 6.7834 17 6 -5.4441 2.3813 6.5105 18 6 -5.0574 1.1205 6.0758 19 8 -5.9949 0.1746 5.8126 20 6 -7.2741 0.4818 6.1077 21 1 -7.5247 1.4724 6.4572 22 6 -8.2678 -0.4743 5.9625 23 7 -7.9624 -1.6811 5.5373 24 14 -10.0400 -0.0489 6.3722 25 1 -10.7155 0.4784 5.1594 26 1 -10.7460 -1.2682 6.8414 27 1 -10.0674 0.9812 7.4415 28 6 -3.7096 0.8309 5.9057 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9988 4.1817 1.2375 35 1 2.8030 2.3006 3.1590 36 1 2.3836 0.6523 2.6342 37 1 0.0988 2.2872 2.3445 38 1 -1.5441 2.1785 3.9993 39 1 -0.7067 2.0685 6.6946 40 1 -1.1267 0.4204 6.1696 41 1 -2.4009 3.8011 6.8216 42 1 -4.7875 4.3189 7.1261 43 1 -6.4915 2.6110 6.6393 44 1 -8.6576 -2.3500 5.4361 45 1 -3.4058 -0.1476 5.5642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647314540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:57 Heat of formation + Delta-G solvation = 68.327038 kcal Electronic energy + Delta-G solvation = -28613.760543 eV Core-core repulsion = 24441.647781 eV Total energy + Delta-G solvation = -4172.112762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.72062 -40.13280 -39.13712 -36.97206 -36.11533 -35.28776 -34.51523 -32.39697 -31.94718 -31.16621 -30.63173 -29.19129 -27.13242 -25.69366 -25.00429 -24.77748 -22.92013 -21.78361 -21.23486 -20.93508 -20.84753 -18.90738 -17.90845 -17.53809 -17.16621 -16.87883 -16.16444 -15.96328 -15.43001 -15.17284 -14.88159 -14.72387 -14.57644 -14.45359 -14.30956 -13.78992 -13.74811 -13.65915 -13.46528 -13.34358 -12.76875 -12.58863 -12.45584 -12.24371 -12.09729 -11.86456 -11.72430 -11.43386 -11.24810 -10.98477 -10.88083 -10.75896 -10.58420 -10.52005 -10.41302 -9.67910 -9.53893 -9.46460 -8.95017 -8.92782 -8.31542 -7.38765 -6.54239 -4.13780 1.00304 1.79835 1.88190 2.14400 2.21285 2.79281 3.06540 3.07679 3.07974 3.12493 3.77565 3.88244 3.98263 4.13126 4.30702 4.33357 4.49069 4.55304 4.62890 4.86863 4.94431 5.01405 5.02638 5.15592 5.19722 5.22700 5.45312 5.48535 5.54726 5.70173 5.74980 5.79047 5.84283 6.01664 6.04816 6.12189 6.19104 6.42605 6.49511 6.71702 6.75787 6.94632 7.12770 7.22137 7.30220 7.64925 7.84844 7.89922 8.10053 8.44459 8.91291 9.59271 10.63461 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013708 B = 0.002019 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.057314 B =13866.192186 C =14972.672990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.276 5.276 4 N -0.077 5.077 5 N -0.273 5.273 6 C -0.026 4.026 7 C -0.042 4.042 8 C 0.218 3.782 9 N -0.749 5.749 10 C 0.706 3.294 11 O -0.591 6.591 12 N -0.734 5.734 13 C 0.187 3.813 14 C -0.074 4.074 15 C -0.194 4.194 16 C -0.076 4.076 17 C -0.225 4.225 18 C 0.149 3.851 19 O -0.176 6.176 20 C -0.393 4.393 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.170 4.170 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.192 0.808 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.397 0.603 38 H 0.399 0.601 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.701 5.912 -7.251 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.072 5.072 4 N -0.056 5.056 5 N -0.137 5.137 6 C -0.185 4.185 7 C -0.174 4.174 8 C 0.092 3.908 9 N -0.407 5.407 10 C 0.406 3.594 11 O -0.470 6.470 12 N -0.388 5.388 13 C 0.064 3.936 14 C -0.075 4.075 15 C -0.213 4.213 16 C -0.095 4.095 17 C -0.245 4.245 18 C 0.096 3.904 19 O -0.079 6.079 20 C -0.470 4.470 21 H 0.110 0.890 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.190 4.190 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.209 0.791 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.231 0.769 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.081 0.919 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.367 5.019 -8.210 19.854 hybrid contribution -1.695 0.479 0.794 1.932 sum 15.671 5.498 -7.416 18.188 Atomic orbital electron populations 1.22184 0.92355 1.04602 1.03750 1.22219 0.96846 0.76359 1.06067 1.47565 1.41694 1.13582 1.04331 1.78349 1.16308 0.99177 1.11799 1.75168 1.15867 1.10342 1.12368 1.23511 1.05114 0.97866 0.91993 1.22180 1.09812 0.93866 0.91566 1.19355 0.83646 1.02172 0.85635 1.45161 1.11547 1.71374 1.12607 1.15863 0.82912 0.78917 0.81682 1.90939 1.51415 1.51549 1.53057 1.45277 1.09161 1.69370 1.15026 1.20021 0.91256 1.00974 0.81360 1.19263 0.92965 0.94128 1.01110 1.20490 0.95606 0.96381 1.08867 1.20755 0.92774 0.98030 0.97900 1.21249 1.00326 0.94132 1.08746 1.19330 0.89754 0.88890 0.92463 1.83978 1.15903 1.36803 1.71257 1.21323 0.80025 0.99235 1.46372 0.89026 1.25296 0.99998 0.94609 0.96545 1.70029 1.34191 1.03129 1.42202 0.85711 0.80384 0.78345 0.79000 1.19841 1.20188 1.19152 1.20082 0.90032 0.99949 1.08944 0.89205 0.91417 0.91110 0.87219 0.87545 0.79078 0.88424 0.90204 0.76852 0.76676 0.90971 0.90931 0.87459 0.87272 0.85470 0.91924 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.16 0.38 -0.55 16 2 C 0.11 0.55 6.90 -4.04 -0.03 0.52 16 3 N -0.28 -2.24 3.34 -57.05 -0.19 -2.43 16 4 N -0.08 -0.85 13.16 60.35 0.79 -0.05 16 5 N -0.27 -3.14 12.41 30.23 0.38 -2.77 16 6 C -0.03 -0.22 11.99 -17.73 -0.21 -0.44 16 7 C -0.04 -0.32 6.36 -82.08 -0.52 -0.84 16 8 C 0.22 1.55 5.90 -5.19 -0.03 1.52 16 9 N -0.75 -6.10 5.53 -66.41 -0.37 -6.47 16 10 C 0.71 8.31 8.57 -86.91 -0.74 7.57 16 11 O -0.59 -9.14 16.34 5.29 0.09 -9.05 16 12 N -0.73 -8.47 5.55 -66.42 -0.37 -8.84 16 13 C 0.19 2.52 5.80 -5.19 -0.03 2.49 16 14 C -0.07 -1.17 5.25 -104.65 -0.55 -1.72 16 15 C -0.19 -2.99 9.70 -39.53 -0.38 -3.38 16 16 C -0.08 -1.28 10.04 -39.61 -0.40 -1.67 16 17 C -0.22 -4.54 9.17 -39.40 -0.36 -4.90 16 18 C 0.15 3.36 6.65 -39.11 -0.26 3.10 16 19 O -0.18 -4.78 9.76 0.05 0.00 -4.77 16 20 C -0.39 -10.53 9.49 30.89 0.29 -10.24 16 21 H 0.09 2.26 5.21 -52.49 -0.27 1.99 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -24.44 13.67 55.48 0.76 -23.68 16 24 Si 0.94 19.79 29.55 -169.99 -5.02 14.77 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 27 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 28 C -0.17 -3.26 9.65 -39.39 -0.38 -3.64 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 31 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.11 0.40 7.22 -51.93 -0.38 0.03 16 34 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.56 7.32 -51.93 -0.38 0.18 16 37 H 0.40 2.72 8.25 -40.82 -0.34 2.39 16 38 H 0.40 4.07 8.48 -40.82 -0.35 3.73 16 39 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 40 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 41 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.13 2.59 5.64 -52.49 -0.30 2.29 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -33.67 391.11 -7.14 -40.80 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.77 Total: 7.78 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -3.32 Total: -11.20 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 1.00 Total: -44.23 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.67 -7.14 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647314540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.132 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds