Wall clock time and date at job start Wed Apr 1 2020 03:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46748 * 2 1 4 4 C 1.36930 * 119.99845 * 275.47655 * 3 2 1 5 5 H 1.08005 * 120.00574 * 41.41082 * 4 3 2 6 6 C 1.38813 * 120.00062 * 221.41262 * 4 3 2 7 7 N 1.31626 * 120.00009 * 18.31573 * 6 4 3 8 8 Si 1.86796 * 120.00174 * 198.32473 * 6 4 3 9 9 H 1.48500 * 109.47768 * 89.99831 * 8 6 4 10 10 H 1.48509 * 109.47306 * 209.99741 * 8 6 4 11 11 H 1.48498 * 109.47239 * 329.99418 * 8 6 4 12 12 C 1.46500 * 119.99799 * 95.47608 * 3 2 1 13 13 C 1.52995 * 109.47202 * 269.99907 * 12 3 2 14 14 C 1.53000 * 109.46926 * 180.02562 * 13 12 3 15 15 N 1.46501 * 109.47383 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00365 * 179.97438 * 15 14 13 17 17 O 1.21581 * 119.99754 * 0.02562 * 16 15 14 18 18 C 1.47582 * 119.99914 * 179.97438 * 16 15 14 19 19 C 1.38654 * 120.41811 * 354.84596 * 18 16 15 20 20 C 1.39253 * 120.71864 * 180.02562 * 19 18 16 21 21 F 1.35095 * 119.43295 * 179.97438 * 20 19 18 22 22 C 1.36556 * 121.13131 * 0.27217 * 20 19 18 23 23 C 1.40286 * 119.91796 * 359.50197 * 22 20 19 24 24 C 1.40714 * 122.07565 * 180.21652 * 23 22 20 25 25 C 1.36250 * 118.66450 * 180.24889 * 24 23 22 26 26 N 1.32522 * 121.83624 * 359.97438 * 25 24 23 27 27 C 1.31328 * 122.72362 * 0.02562 * 26 25 24 28 28 C 1.40105 * 119.92787 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47416 * 60.00274 * 1 2 3 30 30 H 1.09009 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47387 * 299.99653 * 1 2 3 32 32 H 1.08995 * 109.47256 * 240.00194 * 2 1 3 33 33 H 1.09000 * 109.47035 * 119.99420 * 2 1 3 34 34 H 0.97000 * 120.00234 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46760 * 149.99720 * 12 3 2 36 36 H 1.08995 * 109.47187 * 30.00241 * 12 3 2 37 37 H 1.08992 * 109.47591 * 60.00515 * 13 12 3 38 38 H 1.09005 * 109.46872 * 299.99965 * 13 12 3 39 39 H 1.08994 * 109.47764 * 59.99429 * 14 13 12 40 40 H 1.09005 * 109.46842 * 299.99402 * 14 13 12 41 41 H 0.97005 * 119.99345 * 359.97438 * 15 14 13 42 42 H 1.07997 * 119.64018 * 0.02562 * 19 18 16 43 43 H 1.07996 * 120.03620 * 179.74056 * 22 20 19 44 44 H 1.07998 * 120.66788 * 0.27438 * 24 23 22 45 45 H 1.07996 * 119.08131 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.03292 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1397 2.0645 -1.1805 5 1 1.3730 1.9776 -1.9361 6 6 3.2484 2.8688 -1.4060 7 7 4.3352 2.7098 -0.6808 8 14 3.1978 4.1769 -2.7385 9 1 2.7000 5.4518 -2.1622 10 1 4.5638 4.3805 -3.2845 11 1 2.2894 3.7384 -3.8284 12 6 2.3765 2.0315 1.2630 13 6 1.1475 2.7364 1.8403 14 6 1.5219 3.4160 3.1589 15 7 0.3449 4.0905 3.7122 16 6 0.4378 4.7603 4.8780 17 8 1.4986 4.8050 5.4705 18 6 -0.7478 5.4402 5.4350 19 6 -1.9327 5.4865 4.7163 20 6 -3.0549 6.1268 5.2356 21 9 -4.1959 6.1567 4.5129 22 6 -3.0202 6.7302 6.4601 23 6 -1.8419 6.7016 7.2210 24 6 -1.7568 7.3043 8.4897 25 6 -0.5761 7.2390 9.1664 26 7 0.4854 6.6260 8.6627 27 6 0.4766 6.0431 7.4860 28 6 -0.6894 6.0536 6.7093 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.1101 3.2716 -0.8386 35 1 3.1645 2.7631 1.0842 36 1 2.7308 1.2815 1.9700 37 1 0.3596 2.0049 2.0191 38 1 0.7932 3.4865 1.1331 39 1 2.3097 4.1476 2.9799 40 1 1.8763 2.6662 3.8663 41 1 -0.5013 4.0551 3.2392 42 1 -1.9857 5.0209 3.7433 43 1 -3.8998 7.2254 6.8440 44 1 -2.6104 7.8081 8.9185 45 1 -0.5032 7.6997 10.1405 46 1 1.3671 5.5554 7.1177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660528787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:17 Heat of formation + Delta-G solvation = -7.123314 kcal Electronic energy + Delta-G solvation = -29084.504599 eV Core-core repulsion = 24889.200103 eV Total energy + Delta-G solvation = -4195.304497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -49.43593 -41.41316 -39.58633 -37.36008 -36.52277 -35.05680 -33.44510 -31.89375 -31.60414 -31.15840 -30.04364 -28.52727 -25.87460 -24.87535 -24.00991 -23.84266 -23.02146 -21.22110 -20.90783 -20.12466 -18.74094 -18.26715 -17.69710 -16.76780 -16.59076 -16.35354 -16.19921 -15.71718 -15.54572 -15.23586 -14.98222 -14.90043 -14.45491 -14.06163 -13.86910 -13.63293 -13.43168 -13.39641 -13.35197 -12.77743 -12.65806 -12.39668 -12.13556 -12.10875 -11.64132 -11.51366 -11.22434 -11.05820 -10.80721 -10.63312 -10.62317 -10.50433 -10.14625 -9.99278 -9.71831 -9.65077 -9.58780 -9.41633 -9.11037 -8.55001 -8.51022 -6.54646 -5.81288 -3.46655 -0.41118 0.32983 1.21900 2.18377 2.91807 2.94095 3.32438 3.40775 3.41296 3.57300 3.68402 3.98077 4.09374 4.30743 4.34620 4.41823 4.43600 4.53233 4.77023 4.96384 5.12628 5.19899 5.25885 5.35318 5.37044 5.45420 5.55658 5.65056 5.73418 5.76282 5.91155 6.03026 6.11701 6.17417 6.29846 6.34555 6.37683 6.44099 6.53183 6.66088 6.70220 6.89592 7.03636 7.14182 7.35225 7.60956 7.70594 7.79821 8.01085 8.52369 9.17774 9.77406 10.38943 11.17748 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.002345 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.048019 B =11938.400618 C =12386.057432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.263 4.263 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.154 3.846 13 C -0.149 4.149 14 C 0.118 3.882 15 N -0.710 5.710 16 C 0.555 3.445 17 O -0.527 6.527 18 C -0.059 4.059 19 C -0.119 4.119 20 C 0.120 3.880 21 F -0.130 7.130 22 C -0.131 4.131 23 C -0.005 4.005 24 C -0.167 4.167 25 C 0.089 3.911 26 N -0.490 5.490 27 C 0.156 3.844 28 C -0.094 4.094 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.256 0.744 35 H 0.091 0.909 36 H 0.026 0.974 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.400 0.600 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.155 0.845 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.350 7.205 16.504 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.393 4.393 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.216 1.216 11 H -0.202 1.202 12 C 0.027 3.973 13 C -0.190 4.190 14 C -0.005 4.005 15 N -0.360 5.360 16 C 0.341 3.659 17 O -0.406 6.406 18 C -0.065 4.065 19 C -0.138 4.138 20 C 0.100 3.900 21 F -0.109 7.109 22 C -0.150 4.150 23 C -0.010 4.010 24 C -0.187 4.187 25 C -0.055 4.055 26 N -0.198 5.198 27 C -0.014 4.014 28 C -0.097 4.097 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.235 0.765 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.159 0.841 45 H 0.173 0.827 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -13.712 7.325 17.440 23.363 hybrid contribution -1.734 0.865 -1.602 2.514 sum -15.446 8.190 15.837 23.590 Atomic orbital electron populations 1.22370 1.00223 0.98904 1.01028 1.20856 0.91571 0.87439 0.98734 1.43691 1.76176 1.08129 1.02430 1.18955 1.01548 1.23717 0.95103 0.92501 1.25320 0.94378 1.00972 0.97760 1.69979 1.02120 1.38875 1.41820 0.86406 0.76984 0.82195 0.81834 1.21251 1.21646 1.20246 1.20743 0.94032 0.96549 0.85975 1.22593 1.02657 0.99975 0.93733 1.21637 0.86611 0.96371 0.95868 1.46158 1.15055 1.52518 1.22314 1.17936 0.87337 0.79156 0.81472 1.90590 1.29322 1.61423 1.59237 1.19864 0.93728 0.98753 0.94107 1.21436 0.91330 0.99824 1.01260 1.17210 0.82611 0.99536 0.90681 1.91566 1.47642 1.94578 1.77098 1.21054 0.98999 1.01331 0.93604 1.17829 0.92312 0.96175 0.94685 1.21839 1.00332 1.02183 0.94339 1.22411 0.88370 0.94977 0.99709 1.67741 1.29944 1.08563 1.13544 1.24702 0.97962 0.91114 0.87583 1.18908 0.95819 1.00045 0.94952 0.93278 0.94632 0.93883 0.93865 0.94854 0.93440 0.89075 0.95529 0.92899 0.91596 0.90856 0.91319 0.76482 0.83441 0.83385 0.84088 0.82723 0.77982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 10.21 37.16 0.38 -2.48 16 2 C 0.14 2.86 6.44 -4.04 -0.03 2.84 16 3 N -0.58 -13.76 2.41 -173.24 -0.42 -14.17 16 4 C -0.26 -6.88 9.43 -15.06 -0.14 -7.02 16 5 H 0.06 1.50 7.89 -52.48 -0.41 1.09 16 6 C 0.02 0.45 5.00 -17.43 -0.09 0.36 16 7 N -0.89 -24.77 11.56 55.49 0.64 -24.13 16 8 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.15 3.32 5.33 -4.04 -0.02 3.30 16 13 C -0.15 -2.54 5.65 -26.73 -0.15 -2.69 16 14 C 0.12 1.78 5.67 -4.04 -0.02 1.75 16 15 N -0.71 -8.84 5.51 -61.33 -0.34 -9.18 16 16 C 0.55 7.33 7.74 -12.45 -0.10 7.24 16 17 O -0.53 -8.35 13.46 5.29 0.07 -8.28 16 18 C -0.06 -0.66 5.90 -104.67 -0.62 -1.28 16 19 C -0.12 -1.09 9.48 -39.05 -0.37 -1.46 16 20 C 0.12 1.07 7.22 -39.81 -0.29 0.78 16 21 F -0.13 -1.20 17.24 2.25 0.04 -1.16 16 22 C -0.13 -1.05 9.75 -39.42 -0.38 -1.44 16 23 C 0.00 -0.04 5.74 -106.84 -0.61 -0.66 16 24 C -0.17 -1.33 9.88 -39.36 -0.39 -1.72 16 25 C 0.09 0.82 11.07 -17.97 -0.20 0.62 16 26 N -0.49 -6.01 10.30 -13.22 -0.14 -6.14 16 27 C 0.16 1.98 10.49 -17.07 -0.18 1.81 16 28 C -0.09 -1.09 5.76 -106.58 -0.61 -1.71 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.04 0.71 6.65 -51.93 -0.35 0.36 16 32 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.09 2.26 5.69 -51.93 -0.30 1.97 16 36 H 0.03 0.55 7.86 -51.93 -0.41 0.14 16 37 H 0.05 0.84 6.65 -51.93 -0.35 0.50 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.40 4.00 6.54 -40.82 -0.27 3.73 16 42 H 0.15 1.07 6.41 -52.49 -0.34 0.73 16 43 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.20 2.81 4.96 -52.49 -0.26 2.55 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -30.34 383.91 -9.22 -39.56 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.02 Total: 3.58 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.82 Total: -1.77 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.25 Total: -53.62 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.07 Total: -8.28 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.34 -9.22 -39.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660528787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.437 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds