Wall clock time and date at job start Wed Apr 1 2020 03:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46748 * 2 1 4 4 C 1.36930 * 119.99845 * 275.47655 * 3 2 1 5 5 H 1.08005 * 120.00574 * 41.41082 * 4 3 2 6 6 C 1.38813 * 120.00062 * 221.41262 * 4 3 2 7 7 N 1.31626 * 120.00009 * 18.31573 * 6 4 3 8 8 Si 1.86796 * 120.00174 * 198.32473 * 6 4 3 9 9 H 1.48500 * 109.47768 * 89.99831 * 8 6 4 10 10 H 1.48509 * 109.47306 * 209.99741 * 8 6 4 11 11 H 1.48498 * 109.47239 * 329.99418 * 8 6 4 12 12 C 1.46500 * 119.99799 * 95.47608 * 3 2 1 13 13 C 1.52995 * 109.47202 * 269.99907 * 12 3 2 14 14 C 1.53000 * 109.46926 * 180.02562 * 13 12 3 15 15 N 1.46501 * 109.47383 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00365 * 179.97438 * 15 14 13 17 17 O 1.21581 * 119.99754 * 0.02562 * 16 15 14 18 18 C 1.47582 * 119.99914 * 179.97438 * 16 15 14 19 19 C 1.38654 * 120.41811 * 354.84596 * 18 16 15 20 20 C 1.39253 * 120.71864 * 180.02562 * 19 18 16 21 21 F 1.35095 * 119.43295 * 179.97438 * 20 19 18 22 22 C 1.36556 * 121.13131 * 0.27217 * 20 19 18 23 23 C 1.40286 * 119.91796 * 359.50197 * 22 20 19 24 24 C 1.40714 * 122.07565 * 180.21652 * 23 22 20 25 25 C 1.36250 * 118.66450 * 180.24889 * 24 23 22 26 26 N 1.32522 * 121.83624 * 359.97438 * 25 24 23 27 27 C 1.31328 * 122.72362 * 0.02562 * 26 25 24 28 28 C 1.40105 * 119.92787 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47416 * 60.00274 * 1 2 3 30 30 H 1.09009 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47387 * 299.99653 * 1 2 3 32 32 H 1.08995 * 109.47256 * 240.00194 * 2 1 3 33 33 H 1.09000 * 109.47035 * 119.99420 * 2 1 3 34 34 H 0.97000 * 120.00234 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46760 * 149.99720 * 12 3 2 36 36 H 1.08995 * 109.47187 * 30.00241 * 12 3 2 37 37 H 1.08992 * 109.47591 * 60.00515 * 13 12 3 38 38 H 1.09005 * 109.46872 * 299.99965 * 13 12 3 39 39 H 1.08994 * 109.47764 * 59.99429 * 14 13 12 40 40 H 1.09005 * 109.46842 * 299.99402 * 14 13 12 41 41 H 0.97005 * 119.99345 * 359.97438 * 15 14 13 42 42 H 1.07997 * 119.64018 * 0.02562 * 19 18 16 43 43 H 1.07996 * 120.03620 * 179.74056 * 22 20 19 44 44 H 1.07998 * 120.66788 * 0.27438 * 24 23 22 45 45 H 1.07996 * 119.08131 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.03292 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1397 2.0645 -1.1805 5 1 1.3730 1.9776 -1.9361 6 6 3.2484 2.8688 -1.4060 7 7 4.3352 2.7098 -0.6808 8 14 3.1978 4.1769 -2.7385 9 1 2.7000 5.4518 -2.1622 10 1 4.5638 4.3805 -3.2845 11 1 2.2894 3.7384 -3.8284 12 6 2.3765 2.0315 1.2630 13 6 1.1475 2.7364 1.8403 14 6 1.5219 3.4160 3.1589 15 7 0.3449 4.0905 3.7122 16 6 0.4378 4.7603 4.8780 17 8 1.4986 4.8050 5.4705 18 6 -0.7478 5.4402 5.4350 19 6 -1.9327 5.4865 4.7163 20 6 -3.0549 6.1268 5.2356 21 9 -4.1959 6.1567 4.5129 22 6 -3.0202 6.7302 6.4601 23 6 -1.8419 6.7016 7.2210 24 6 -1.7568 7.3043 8.4897 25 6 -0.5761 7.2390 9.1664 26 7 0.4854 6.6260 8.6627 27 6 0.4766 6.0431 7.4860 28 6 -0.6894 6.0536 6.7093 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.1101 3.2716 -0.8386 35 1 3.1645 2.7631 1.0842 36 1 2.7308 1.2815 1.9700 37 1 0.3596 2.0049 2.0191 38 1 0.7932 3.4865 1.1331 39 1 2.3097 4.1476 2.9799 40 1 1.8763 2.6662 3.8663 41 1 -0.5013 4.0551 3.2392 42 1 -1.9857 5.0209 3.7433 43 1 -3.8998 7.2254 6.8440 44 1 -2.6104 7.8081 8.9185 45 1 -0.5032 7.6997 10.1405 46 1 1.3671 5.5554 7.1177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660528787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:16 Heat of formation + Delta-G solvation = -24.227549 kcal Electronic energy + Delta-G solvation = -29085.246295 eV Core-core repulsion = 24889.200103 eV Total energy + Delta-G solvation = -4196.046192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -50.10624 -42.21667 -40.57755 -38.22090 -38.08608 -36.36040 -34.24722 -33.79955 -32.87157 -31.93268 -30.96108 -30.08746 -27.30311 -26.01378 -25.27545 -24.62952 -24.09196 -22.56375 -22.16652 -21.65560 -19.57196 -19.06281 -18.64928 -18.37143 -17.43817 -17.27535 -17.06284 -16.87836 -16.56402 -16.52581 -16.16967 -15.81660 -15.71606 -15.35944 -15.22006 -14.84516 -14.44589 -14.36822 -14.19619 -14.08443 -14.04111 -13.48565 -13.24177 -13.17495 -12.90584 -12.84061 -12.73837 -12.70571 -12.57805 -12.31825 -12.11845 -11.94199 -11.44050 -11.36847 -11.22781 -11.02394 -10.51537 -10.50162 -10.25406 -10.16582 -9.25868 -8.48408 -7.78882 -5.49700 -1.16248 -0.39572 0.44507 1.40278 1.45581 1.48249 1.55963 1.90062 2.03505 2.50856 2.85190 2.91339 3.23906 3.27783 3.38825 3.54780 3.61861 3.67681 3.72536 3.81918 4.15522 4.17431 4.25138 4.34113 4.43323 4.46981 4.53787 4.55766 4.71645 4.74722 4.75623 4.77924 4.87778 4.91486 5.03236 5.04848 5.05838 5.18101 5.33789 5.36119 5.45183 5.47832 5.61761 5.65548 5.71081 5.85258 6.34658 6.51690 6.92087 7.03302 7.21867 7.89234 8.43847 9.14638 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.002345 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.048019 B =11938.400618 C =12386.057432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.264 4.264 5 H 0.053 0.947 6 C -0.032 4.032 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.284 1.284 10 H -0.296 1.296 11 H -0.269 1.269 12 C 0.154 3.846 13 C -0.125 4.125 14 C 0.131 3.869 15 N -0.702 5.702 16 C 0.555 3.445 17 O -0.561 6.561 18 C -0.082 4.082 19 C -0.100 4.100 20 C 0.108 3.892 21 F -0.130 7.130 22 C -0.105 4.105 23 C -0.021 4.021 24 C -0.142 4.142 25 C 0.068 3.932 26 N -0.511 5.511 27 C 0.125 3.875 28 C -0.103 4.103 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.044 0.956 34 H 0.251 0.749 35 H 0.055 0.945 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.413 0.587 42 H 0.165 0.835 43 H 0.184 0.816 44 H 0.185 0.815 45 H 0.185 0.815 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.184 8.178 17.461 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.395 4.395 5 H 0.071 0.929 6 C -0.230 4.230 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.210 1.210 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.027 3.973 13 C -0.166 4.166 14 C 0.007 3.993 15 N -0.353 5.353 16 C 0.343 3.657 17 O -0.442 6.442 18 C -0.087 4.087 19 C -0.119 4.119 20 C 0.087 3.913 21 F -0.109 7.109 22 C -0.123 4.123 23 C -0.026 4.026 24 C -0.161 4.161 25 C -0.076 4.076 26 N -0.219 5.219 27 C -0.044 4.044 28 C -0.106 4.106 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.251 0.749 42 H 0.183 0.817 43 H 0.201 0.799 44 H 0.202 0.798 45 H 0.202 0.798 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -17.594 8.282 18.387 26.762 hybrid contribution -0.620 0.546 -1.811 1.990 sum -18.215 8.827 16.576 26.162 Atomic orbital electron populations 1.22169 0.97243 1.00741 1.00865 1.20993 0.93812 0.85789 0.98505 1.43941 1.76624 1.09456 1.02295 1.19140 1.00986 1.23548 0.95792 0.92933 1.25969 0.94191 1.02975 0.99889 1.70114 1.02637 1.39848 1.43596 0.85486 0.76543 0.79923 0.79789 1.21049 1.22298 1.19318 1.20648 0.95011 0.95990 0.85660 1.22204 1.00794 0.99663 0.93893 1.21263 0.87089 0.95842 0.95059 1.45911 1.14790 1.52300 1.22342 1.18280 0.87719 0.78667 0.81052 1.90594 1.30881 1.62560 1.60131 1.19546 0.93566 1.00824 0.94806 1.21615 0.90589 0.98329 1.01412 1.17223 0.82476 1.00344 0.91260 1.91575 1.47457 1.94659 1.77170 1.21399 0.99205 0.99203 0.92519 1.18090 0.92133 0.96617 0.95783 1.22301 1.00956 0.99861 0.92947 1.22937 0.88229 0.95305 1.01112 1.67644 1.31950 1.08866 1.13486 1.24335 0.98220 0.93158 0.88712 1.18987 0.96243 1.00411 0.94990 0.94522 0.91783 0.92868 0.95496 0.93744 0.94002 0.92649 0.95280 0.90955 0.92729 0.92992 0.91352 0.74859 0.81709 0.79851 0.79786 0.79843 0.80330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 10.21 71.98 0.73 -4.14 16 2 C 0.13 5.39 6.44 86.38 0.56 5.95 16 3 N -0.60 -28.52 2.41 -702.01 -1.69 -30.21 16 4 C -0.26 -13.93 9.43 84.03 0.79 -13.14 16 5 H 0.05 2.78 7.89 -2.91 -0.02 2.76 16 6 C -0.03 -1.76 5.00 84.86 0.42 -1.34 16 7 N -0.92 -52.98 11.56 21.65 0.25 -52.73 16 8 Si 0.95 43.71 29.59 68.60 2.03 45.74 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 C 0.15 6.75 5.33 86.38 0.46 7.21 16 13 C -0.13 -4.24 5.65 30.59 0.17 -4.07 16 14 C 0.13 4.04 5.67 86.38 0.49 4.53 16 15 N -0.70 -17.38 5.51 -466.23 -2.57 -19.94 16 16 C 0.55 15.09 7.74 86.71 0.67 15.76 16 17 O -0.56 -19.04 13.46 -3.97 -0.05 -19.10 16 18 C -0.08 -1.81 5.90 -19.90 -0.12 -1.93 16 19 C -0.10 -1.64 9.48 22.61 0.21 -1.43 16 20 C 0.11 1.57 7.22 22.12 0.16 1.73 16 21 F -0.13 -1.96 17.24 44.97 0.78 -1.19 16 22 C -0.10 -1.27 9.75 22.37 0.22 -1.05 16 23 C -0.02 -0.34 5.74 -21.30 -0.12 -0.46 16 24 C -0.14 -1.75 9.88 22.41 0.22 -1.53 16 25 C 0.07 1.11 11.07 84.13 0.93 2.04 16 26 N -0.51 -12.70 10.30 -195.74 -2.02 -14.72 16 27 C 0.12 3.35 10.49 85.22 0.89 4.24 16 28 C -0.10 -2.37 5.76 -21.14 -0.12 -2.49 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.05 1.60 6.65 -2.38 -0.02 1.58 16 32 H 0.03 1.14 8.08 -2.39 -0.02 1.12 16 33 H 0.04 1.66 7.83 -2.39 -0.02 1.64 16 34 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 35 H 0.06 2.87 5.69 -2.38 -0.01 2.86 16 36 H 0.03 1.22 7.86 -2.39 -0.02 1.21 16 37 H 0.07 2.18 6.65 -2.39 -0.02 2.16 16 38 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.41 7.72 6.54 -92.70 -0.61 7.12 16 42 H 0.17 1.99 6.41 -2.91 -0.02 1.97 16 43 H 0.18 0.91 8.06 -2.91 -0.02 0.88 16 44 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 45 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 46 H 0.18 5.55 4.96 -2.96 -0.01 5.53 16 Total: -1.00 -68.92 383.91 3.73 -65.19 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.42 Total: 17.06 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 6.58 Total: 9.90 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.02 Total: -117.60 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.78 Total: -1.19 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -68.92 3.73 -65.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660528787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.964 kcal (2) G-P(sol) polarization free energy of solvation -68.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds