Wall clock time and date at job start Wed Apr 1 2020 04:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28600 * 124.61809 * 2 1 4 4 C 1.31379 * 108.71996 * 179.97438 * 3 2 1 5 5 C 1.39680 * 105.90109 * 359.97438 * 4 3 2 6 6 C 1.50699 * 127.05488 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47017 * 124.99988 * 6 5 4 8 8 C 1.52998 * 109.47049 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.47380 * 180.02562 * 8 7 6 10 10 C 1.34771 * 120.00089 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99944 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99799 * 180.02562 * 10 9 8 13 13 C 1.40030 * 119.99945 * 175.49576 * 12 10 9 14 14 C 1.38915 * 120.00051 * 215.12591 * 13 12 10 15 15 C 1.38007 * 120.00044 * 180.02562 * 14 13 12 16 16 C 1.38902 * 119.99859 * 0.02562 * 15 14 13 17 17 O 1.35783 * 119.99859 * 179.97438 * 16 15 14 18 18 C 1.34812 * 116.99955 * 5.34819 * 17 16 15 19 19 H 1.08007 * 120.00218 * 354.95840 * 18 17 16 20 20 C 1.38628 * 120.00199 * 174.96182 * 18 17 16 21 21 N 1.31576 * 119.99901 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00038 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47323 * 60.00392 * 22 20 18 24 24 H 1.48505 * 109.47247 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47443 * 300.00221 * 22 20 18 26 26 C 1.38907 * 120.00667 * 0.23850 * 16 15 14 27 27 C 1.38012 * 119.99623 * 359.48578 * 26 16 15 28 28 N 1.28607 * 124.61923 * 180.25291 * 2 1 3 29 29 H 1.09003 * 109.46731 * 90.02205 * 1 2 3 30 30 H 1.09004 * 109.46736 * 210.02140 * 1 2 3 31 31 H 1.08997 * 109.47027 * 330.02340 * 1 2 3 32 32 H 1.07993 * 127.05352 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.46345 * 5.00265 * 6 5 4 34 34 H 1.08993 * 109.47117 * 245.00450 * 6 5 4 35 35 H 1.08996 * 109.46897 * 60.00593 * 7 6 5 36 36 H 1.09003 * 109.47004 * 300.00127 * 7 6 5 37 37 H 1.09004 * 109.46926 * 59.99698 * 8 7 6 38 38 H 1.09007 * 109.46806 * 300.00446 * 8 7 6 39 39 H 0.96996 * 119.99786 * 0.02562 * 9 8 7 40 40 H 0.97000 * 120.00039 * 355.49040 * 12 10 9 41 41 H 1.08001 * 119.99912 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.99960 * 180.02562 * 15 14 13 43 43 H 0.97003 * 119.99956 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.00196 * 179.72409 * 26 16 15 45 45 H 1.08001 * 120.00318 * 180.23051 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4592 0.6984 0.0006 5 6 3.4592 -0.6984 0.0015 6 6 4.6619 -1.6064 0.0019 7 6 4.5707 -2.5732 1.1842 8 6 5.7920 -3.4947 1.1850 9 7 5.7044 -4.4208 2.3167 10 6 6.6768 -5.3318 2.5188 11 8 7.6266 -5.3854 1.7615 12 7 6.5958 -6.1842 3.5596 13 6 7.5559 -7.1915 3.7160 14 6 7.1868 -8.4296 4.2265 15 6 8.1331 -9.4222 4.3810 16 6 9.4547 -9.1830 4.0267 17 8 10.3859 -10.1594 4.1793 18 6 9.9439 -11.3703 4.5742 19 1 8.9043 -11.5078 4.8326 20 6 10.8239 -12.4389 4.6489 21 7 12.0903 -12.2714 4.3337 22 14 10.2116 -14.1164 5.1968 23 1 9.1550 -14.5863 4.2651 24 1 11.3404 -15.0814 5.1913 25 1 9.6526 -14.0155 6.5689 26 6 9.8249 -7.9432 3.5214 27 6 8.8776 -6.9524 3.3614 28 7 2.1957 -1.0584 -0.0047 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 4.3211 1.3491 0.0011 33 1 5.5687 -1.0081 0.0909 34 1 4.6901 -2.1725 -0.9291 35 1 3.6639 -3.1714 1.0952 36 1 4.5425 -2.0070 2.1152 37 1 6.6987 -2.8961 1.2742 38 1 5.8206 -4.0608 0.2539 39 1 4.9461 -4.3788 2.9201 40 1 5.8726 -6.0998 4.2005 41 1 6.1595 -8.6152 4.5031 42 1 7.8461 -10.3849 4.7775 43 1 12.7061 -13.0191 4.3863 44 1 10.8534 -7.7559 3.2501 45 1 9.1646 -5.9897 2.9651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672748705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:31 Heat of formation + Delta-G solvation = 82.116834 kcal Electronic energy + Delta-G solvation = -27476.295090 eV Core-core repulsion = 23304.780299 eV Total energy + Delta-G solvation = -4171.514792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.96913 -40.26261 -38.74559 -36.97224 -36.11229 -34.54338 -33.90908 -33.23340 -32.21011 -31.91415 -30.14525 -28.82397 -27.61723 -25.99471 -25.20116 -22.83168 -22.71888 -22.15329 -21.52854 -20.99320 -20.35464 -18.43864 -17.75501 -17.72834 -17.32001 -17.22717 -16.50232 -16.02087 -15.46521 -15.13089 -14.93168 -14.59334 -14.51593 -14.15179 -13.93918 -13.80467 -13.50106 -13.46208 -13.34110 -13.07598 -12.80723 -12.74092 -12.43447 -11.95188 -11.76976 -11.70511 -11.51425 -11.43255 -11.21893 -11.15316 -10.97521 -10.70280 -10.64538 -10.45059 -9.90069 -9.59132 -9.55445 -9.19089 -9.12431 -8.64084 -8.13605 -6.85340 -6.39407 -3.97620 1.37543 1.88375 1.98456 2.22370 2.30651 2.76346 3.15731 3.16796 3.20049 3.38920 3.62568 4.00990 4.16253 4.31217 4.46181 4.47325 4.60177 4.64031 4.70512 4.73255 4.89986 4.98104 5.14552 5.19400 5.28437 5.39993 5.45019 5.60840 5.61609 5.75205 5.80514 5.85096 5.88674 6.20097 6.24136 6.26805 6.32224 6.40969 6.74755 6.90716 6.98308 7.17923 7.28577 7.32139 7.49069 7.86807 7.89680 8.04875 8.10475 8.73251 9.05887 9.77260 10.78636 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.036680 B = 0.001348 C = 0.001317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.172549 B =20762.891747 C =21255.723158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.161 5.161 3 N -0.292 5.292 4 C -0.023 4.023 5 C 0.006 3.994 6 C -0.026 4.026 7 C -0.125 4.125 8 C 0.139 3.861 9 N -0.750 5.750 10 C 0.699 3.301 11 O -0.575 6.575 12 N -0.676 5.676 13 C 0.054 3.946 14 C -0.093 4.093 15 C -0.220 4.220 16 C 0.145 3.855 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.178 4.178 27 C -0.067 4.067 28 N -0.285 5.285 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.198 0.802 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.394 0.606 40 H 0.397 0.603 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.270 0.730 44 H 0.120 0.880 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.723 24.135 -5.824 33.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.062 5.062 3 N -0.133 5.133 4 C -0.205 4.205 5 C -0.157 4.157 6 C -0.066 4.066 7 C -0.163 4.163 8 C 0.014 3.986 9 N -0.406 5.406 10 C 0.399 3.601 11 O -0.452 6.452 12 N -0.323 5.323 13 C -0.039 4.039 14 C -0.113 4.113 15 C -0.240 4.240 16 C 0.092 3.908 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.198 4.198 27 C -0.087 4.087 28 N -0.128 5.128 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.215 0.785 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.227 0.773 40 H 0.231 0.769 41 H 0.127 0.873 42 H 0.148 0.852 43 H 0.080 0.920 44 H 0.138 0.862 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.822 23.972 -6.611 33.751 hybrid contribution -0.388 -0.724 0.862 1.191 sum -23.210 23.247 -5.749 33.349 Atomic orbital electron populations 1.22125 0.70242 1.05865 1.04958 1.47925 1.08898 0.99358 1.50028 1.74051 1.04057 1.16161 1.19022 1.24710 0.94478 0.94763 1.06577 1.23176 0.92657 0.94129 1.05745 1.19803 0.91973 0.95235 0.99580 1.21736 0.98555 0.97327 0.98707 1.21163 0.97912 0.90534 0.88942 1.45072 1.25297 1.37552 1.32685 1.15957 0.83070 0.79520 0.81530 1.90931 1.33113 1.73127 1.48026 1.42303 1.30430 1.32354 1.27216 1.17051 0.88137 0.88183 1.10549 1.20453 0.98348 0.91094 1.01425 1.20944 0.93116 1.00361 1.09533 1.19418 0.88698 0.89879 0.92845 1.83992 1.31439 1.18074 1.74665 1.21256 0.96248 0.83670 1.45625 0.89183 1.25268 0.95075 0.99170 0.97004 1.70041 1.02785 1.32303 1.44693 0.85798 0.78297 0.80197 0.79209 1.19562 1.20324 1.19562 1.20158 0.99881 0.92186 1.07583 1.20779 0.90542 0.99194 0.98215 1.74011 1.03653 1.15584 1.19526 0.89286 0.87891 0.87949 0.78528 0.88994 0.89465 0.90632 0.91204 0.91353 0.91365 0.77273 0.76908 0.87282 0.85173 0.92032 0.86165 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.33 11.57 59.85 0.69 1.02 16 2 N -0.16 -1.26 4.35 -16.63 -0.07 -1.33 16 3 N -0.29 -2.53 12.05 30.67 0.37 -2.16 16 4 C -0.02 -0.17 12.15 -17.21 -0.21 -0.37 16 5 C 0.01 0.04 6.61 -82.25 -0.54 -0.50 16 6 C -0.03 -0.14 5.81 -27.88 -0.16 -0.30 16 7 C -0.12 -0.75 5.31 -26.73 -0.14 -0.89 16 8 C 0.14 1.17 5.67 -4.04 -0.02 1.15 16 9 N -0.75 -7.34 5.56 -65.22 -0.36 -7.70 16 10 C 0.70 10.21 8.41 -86.92 -0.73 9.48 16 11 O -0.58 -10.91 13.78 5.29 0.07 -10.84 16 12 N -0.68 -9.46 5.35 -14.18 -0.08 -9.53 16 13 C 0.05 0.98 6.30 -83.61 -0.53 0.45 16 14 C -0.09 -1.69 9.96 -39.42 -0.39 -2.09 16 15 C -0.22 -4.79 9.16 -39.42 -0.36 -5.15 16 16 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 17 O -0.18 -5.17 9.76 0.00 0.00 -5.17 16 18 C -0.39 -11.04 9.48 30.88 0.29 -10.74 16 19 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 22 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 26 C -0.18 -4.02 9.99 -39.42 -0.39 -4.41 16 27 C -0.07 -1.37 8.69 -39.41 -0.34 -1.71 16 28 N -0.29 -2.53 12.05 33.72 0.41 -2.12 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.20 0.78 8.06 -52.49 -0.42 0.35 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.39 2.67 8.49 -40.82 -0.35 2.33 16 40 H 0.40 4.00 8.84 -40.82 -0.36 3.64 16 41 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.13 2.79 5.63 -52.49 -0.30 2.50 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 44 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 45 H 0.13 2.62 6.23 -52.49 -0.33 2.30 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -37.91 388.82 -7.08 -44.98 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.81 Total: 6.98 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.20 Total: -9.73 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 1.02 Total: -47.69 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.07 Total: -16.01 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.91 -7.08 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672748705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.099 kcal (2) G-P(sol) polarization free energy of solvation -37.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds