Wall clock time and date at job start Wed Apr 1 2020 04:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99691 * 2 1 4 4 C 1.53000 * 109.47353 * 275.22140 * 3 2 1 5 5 H 1.08993 * 112.73528 * 43.87588 * 4 3 2 6 6 C 1.53492 * 113.46566 * 273.12834 * 4 3 2 7 7 C 1.53676 * 83.28339 * 219.12447 * 6 4 3 8 8 N 1.47066 * 113.46477 * 174.61765 * 4 3 2 9 9 C 1.36932 * 136.06154 * 321.99284 * 8 4 3 10 10 H 1.08004 * 119.99897 * 355.14852 * 9 8 4 11 11 C 1.38815 * 120.00520 * 175.14426 * 9 8 4 12 12 N 1.31618 * 119.99364 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47327 * 60.00087 * 13 11 9 15 15 H 1.48501 * 109.47394 * 180.02562 * 13 11 9 16 16 H 1.48510 * 109.47271 * 300.00238 * 13 11 9 17 17 C 1.34778 * 120.00091 * 180.02562 * 2 1 3 18 18 O 1.21284 * 119.99802 * 179.97438 * 17 2 1 19 19 C 1.50693 * 120.00091 * 359.97438 * 17 2 1 20 20 N 1.46504 * 109.47315 * 179.97438 * 19 17 2 21 21 N 1.40156 * 126.20733 * 269.69114 * 20 19 17 22 22 C 1.31275 * 107.88268 * 179.81621 * 21 20 19 23 23 C 1.41795 * 132.00983 * 180.02562 * 22 21 20 24 24 C 1.35522 * 119.32480 * 180.42624 * 23 22 21 25 25 C 1.41003 * 119.85821 * 359.97438 * 24 23 22 26 26 C 1.34453 * 120.59812 * 359.97438 * 25 24 23 27 27 N 1.37461 * 120.68536 * 0.02646 * 26 25 24 28 28 C 1.34813 * 131.80742 * 179.97438 * 27 26 25 29 29 O 1.21901 * 126.05790 * 0.03915 * 28 27 26 30 30 H 1.09000 * 109.46967 * 95.23371 * 1 2 3 31 31 H 1.08999 * 109.46799 * 215.23323 * 1 2 3 32 32 H 1.09000 * 109.47199 * 335.23101 * 1 2 3 33 33 H 1.09001 * 109.46874 * 155.22090 * 3 2 1 34 34 H 1.09002 * 109.46763 * 35.22697 * 3 2 1 35 35 H 1.08997 * 114.21014 * 332.68158 * 6 4 3 36 36 H 1.09000 * 114.20716 * 105.50670 * 6 4 3 37 37 H 1.08997 * 113.47068 * 271.29048 * 7 6 4 38 38 H 1.09001 * 113.53009 * 140.85031 * 7 6 4 39 39 H 0.97004 * 120.00091 * 179.97438 * 12 11 9 40 40 H 1.09005 * 109.47348 * 300.00151 * 19 17 2 41 41 H 1.08997 * 109.47212 * 59.99937 * 19 17 2 42 42 H 1.08003 * 120.33952 * 0.43332 * 23 22 21 43 43 H 1.07994 * 120.07000 * 180.02562 * 24 23 22 44 44 H 1.07996 * 119.69835 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.65593 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3388 1.7761 -1.4365 5 1 1.4162 1.6820 -2.0091 6 6 3.5695 1.2173 -2.1638 7 6 3.6563 2.6423 -2.7325 8 7 2.9521 3.1096 -1.5289 9 6 2.8937 4.2737 -0.8102 10 1 2.2091 4.3618 0.0204 11 6 3.7146 5.3406 -1.1491 12 7 4.5487 5.2334 -2.1616 13 14 3.6355 6.9283 -0.1682 14 1 3.9750 6.6511 1.2506 15 1 4.6044 7.9047 -0.7278 16 1 2.2638 7.4917 -0.2480 17 6 2.1389 -1.1672 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3855 -2.4723 -0.0005 20 7 2.3375 -3.5858 -0.0018 21 7 2.8700 -4.2185 -1.1333 22 6 3.6849 -5.1619 -0.7217 23 6 4.4839 -6.0990 -1.4245 24 6 5.2386 -6.9827 -0.7273 25 6 5.2221 -6.9611 0.6824 26 6 4.4636 -6.0699 1.3444 27 7 3.6891 -5.1630 0.6609 28 6 2.8592 -4.1892 1.0858 29 8 2.6204 -3.9062 2.2472 30 1 -0.3633 -0.0937 -1.0234 31 1 -0.3633 -0.8394 0.5929 32 1 -0.3633 0.9331 0.4305 33 1 3.1872 1.1169 0.4307 34 1 1.6520 2.0031 0.5928 35 1 4.3946 0.9483 -1.5043 36 1 3.3410 0.4522 -2.9057 37 1 3.0847 2.7790 -3.6504 38 1 4.6765 3.0178 -2.8116 39 1 5.1221 5.9790 -2.3987 40 1 0.7591 -2.5303 0.8897 41 1 0.7585 -2.5298 -0.8902 42 1 4.4910 -6.1084 -2.5045 43 1 5.8519 -7.7014 -1.2504 44 1 5.8242 -7.6667 1.2354 45 1 4.4629 -6.0665 2.4244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691052998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:35 Heat of formation + Delta-G solvation = 126.538281 kcal Electronic energy + Delta-G solvation = -30059.963716 eV Core-core repulsion = 25890.375183 eV Total energy + Delta-G solvation = -4169.588533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.22285 -39.93293 -38.60513 -37.83634 -37.21598 -35.27766 -34.15764 -32.89622 -32.14729 -29.90923 -28.98390 -27.87486 -27.74716 -26.26567 -24.40073 -23.37834 -23.33736 -22.48872 -21.82551 -19.36557 -19.08646 -18.74749 -17.81356 -17.55888 -16.87767 -16.81284 -16.44059 -16.08665 -15.61448 -15.42888 -15.30790 -14.81047 -14.65874 -13.95301 -13.76789 -13.74529 -13.41403 -13.21386 -13.02000 -12.73394 -12.41787 -12.37147 -12.30731 -12.09274 -12.00713 -11.94482 -11.45227 -11.03138 -10.94452 -10.82008 -10.70071 -10.59186 -10.39068 -10.24094 -9.80513 -9.72850 -9.54979 -9.34746 -8.73744 -8.30773 -7.96310 -6.82497 -5.71370 -3.05441 0.21785 1.21374 1.26310 2.26312 2.62138 2.67362 3.03395 3.17042 3.41454 3.45214 3.46840 3.74265 4.26502 4.37151 4.38406 4.50093 4.59323 4.70943 4.77173 4.83301 5.05012 5.19775 5.29486 5.37921 5.45600 5.49652 5.59304 5.63779 5.64086 5.70870 5.80980 5.90775 5.96846 6.03851 6.12199 6.30294 6.45318 6.54565 6.67595 6.82532 6.84861 7.23461 7.30573 7.44569 7.55987 7.64920 7.66095 8.04337 8.25025 9.06964 9.74595 10.70254 11.45070 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018591 B = 0.002384 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.752803 B =11739.820180 C =12196.645953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.607 5.607 3 C 0.116 3.884 4 C 0.132 3.868 5 H 0.041 0.959 6 C -0.156 4.156 7 C 0.147 3.853 8 N -0.601 5.601 9 C -0.219 4.219 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.912 3.088 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.494 3.506 18 O -0.517 6.517 19 C 0.143 3.857 20 N -0.416 5.416 21 N -0.271 5.271 22 C 0.292 3.708 23 C -0.117 4.117 24 C -0.048 4.048 25 C -0.186 4.186 26 C 0.131 3.869 27 N -0.480 5.480 28 C 0.652 3.348 29 O -0.539 6.539 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.020 0.980 38 H 0.075 0.925 39 H 0.254 0.746 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.158 0.842 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.942 -28.202 2.914 28.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C -0.007 4.007 4 C 0.024 3.976 5 H 0.059 0.941 6 C -0.194 4.194 7 C 0.022 3.978 8 N -0.327 5.327 9 C -0.346 4.346 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.564 5.564 13 Si 0.742 3.258 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.279 3.721 18 O -0.392 6.392 19 C 0.018 3.982 20 N -0.233 5.233 21 N -0.096 5.096 22 C 0.026 3.974 23 C -0.139 4.139 24 C -0.072 4.072 25 C -0.208 4.208 26 C 0.012 3.988 27 N -0.195 5.195 28 C 0.353 3.647 29 O -0.411 6.411 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.176 0.824 43 H 0.166 0.834 44 H 0.172 0.828 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.990 -26.877 3.069 27.508 hybrid contribution 0.056 0.826 0.986 1.287 sum -4.934 -26.051 4.055 26.823 Atomic orbital electron populations 1.21874 0.79705 1.03422 1.01972 1.47847 1.06891 1.06323 1.73082 1.21990 0.97600 0.81820 0.99306 1.22426 0.95276 0.86948 0.92991 0.94143 1.23642 0.98609 0.97364 0.99776 1.22152 0.98697 0.88046 0.88931 1.45570 1.51455 1.07803 1.27857 1.18815 1.17824 0.88829 1.09141 0.90409 1.24799 0.98623 0.98389 0.98567 1.69827 1.26229 1.31356 1.29020 0.86209 0.77190 0.83030 0.79360 1.21057 1.21551 1.21232 1.20645 0.88594 0.85267 0.77569 1.90756 1.13454 1.86718 1.48223 1.21415 0.88728 0.81333 1.06689 1.48161 1.41587 1.30827 1.02772 1.77796 1.15007 1.09023 1.07731 1.21537 0.97823 0.96975 0.81047 1.20281 0.97950 0.94706 1.00942 1.21180 0.95678 0.96571 0.93787 1.20782 1.03303 1.01815 0.94949 1.21695 0.90483 0.87808 0.98849 1.43461 1.37844 1.29507 1.08706 1.16397 0.81460 0.80947 0.85908 1.91133 1.65828 1.68813 1.15334 0.92112 0.91648 0.90200 0.89387 0.90770 0.90191 0.93326 0.96190 0.90670 0.93627 0.85725 0.85363 0.82420 0.83425 0.82769 0.81408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.19 59.85 0.61 1.33 16 2 N -0.61 -9.08 2.87 -181.57 -0.52 -9.61 16 3 C 0.12 2.20 5.44 -4.04 -0.02 2.17 16 4 C 0.13 2.82 4.31 -72.41 -0.31 2.50 16 5 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.16 -3.40 8.03 -26.13 -0.21 -3.61 16 7 C 0.15 3.72 7.52 -8.42 -0.06 3.66 16 8 N -0.60 -15.90 3.65 -176.78 -0.64 -16.54 16 9 C -0.22 -6.20 10.55 -15.06 -0.16 -6.36 16 10 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -28.04 11.42 55.49 0.63 -27.41 16 13 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 17 C 0.49 7.99 7.74 -10.99 -0.09 7.90 16 18 O -0.52 -10.78 15.93 5.55 0.09 -10.69 16 19 C 0.14 1.73 5.47 -5.19 -0.03 1.70 16 20 N -0.42 -6.04 3.11 -66.31 -0.21 -6.25 16 21 N -0.27 -3.77 12.62 31.35 0.40 -3.38 16 22 C 0.29 3.42 7.87 -155.67 -1.23 2.19 16 23 C -0.12 -0.87 10.12 -39.19 -0.40 -1.26 16 24 C -0.05 -0.23 10.06 -39.50 -0.40 -0.63 16 25 C -0.19 -0.95 9.97 -39.87 -0.40 -1.35 16 26 C 0.13 1.07 10.90 -16.36 -0.18 0.89 16 27 N -0.48 -5.87 2.93 -66.47 -0.19 -6.06 16 28 C 0.65 10.00 8.70 -86.80 -0.75 9.25 16 29 O -0.54 -9.49 17.86 5.01 0.09 -9.40 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.45 6.66 -51.93 -0.35 0.10 16 32 H 0.08 0.77 7.89 -51.93 -0.41 0.36 16 33 H 0.09 1.93 7.00 -51.93 -0.36 1.56 16 34 H 0.07 1.38 7.94 -51.93 -0.41 0.96 16 35 H 0.08 1.88 7.94 -51.93 -0.41 1.47 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 2.10 6.92 -51.93 -0.36 1.74 16 39 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.13 1.21 7.37 -51.93 -0.38 0.83 16 41 H 0.13 1.15 8.11 -51.93 -0.42 0.72 16 42 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.15 0.22 8.06 -52.49 -0.42 -0.20 16 44 H 0.15 0.29 8.06 -52.49 -0.42 -0.13 16 45 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -39.94 384.39 -9.34 -49.28 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -6.03 Total: -1.35 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: -3.72 Total: 18.10 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -0.54 Total: -69.24 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.18 Total: -20.08 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.94 -9.34 -49.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691052998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.821 kcal (2) G-P(sol) polarization free energy of solvation -39.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds