Wall clock time and date at job start Wed Apr 1 2020 04:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99691 * 2 1 4 4 C 1.53000 * 109.47353 * 275.22140 * 3 2 1 5 5 H 1.08993 * 112.73528 * 43.87588 * 4 3 2 6 6 C 1.53492 * 113.46566 * 273.12834 * 4 3 2 7 7 C 1.53676 * 83.28339 * 219.12447 * 6 4 3 8 8 N 1.47066 * 113.46477 * 174.61765 * 4 3 2 9 9 C 1.36932 * 136.06154 * 321.99284 * 8 4 3 10 10 H 1.08004 * 119.99897 * 355.14852 * 9 8 4 11 11 C 1.38815 * 120.00520 * 175.14426 * 9 8 4 12 12 N 1.31618 * 119.99364 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47327 * 60.00087 * 13 11 9 15 15 H 1.48501 * 109.47394 * 180.02562 * 13 11 9 16 16 H 1.48510 * 109.47271 * 300.00238 * 13 11 9 17 17 C 1.34778 * 120.00091 * 180.02562 * 2 1 3 18 18 O 1.21284 * 119.99802 * 179.97438 * 17 2 1 19 19 C 1.50693 * 120.00091 * 359.97438 * 17 2 1 20 20 N 1.46504 * 109.47315 * 179.97438 * 19 17 2 21 21 N 1.40156 * 126.20733 * 269.69114 * 20 19 17 22 22 C 1.31275 * 107.88268 * 179.81621 * 21 20 19 23 23 C 1.41795 * 132.00983 * 180.02562 * 22 21 20 24 24 C 1.35522 * 119.32480 * 180.42624 * 23 22 21 25 25 C 1.41003 * 119.85821 * 359.97438 * 24 23 22 26 26 C 1.34453 * 120.59812 * 359.97438 * 25 24 23 27 27 N 1.37461 * 120.68536 * 0.02646 * 26 25 24 28 28 C 1.34813 * 131.80742 * 179.97438 * 27 26 25 29 29 O 1.21901 * 126.05790 * 0.03915 * 28 27 26 30 30 H 1.09000 * 109.46967 * 95.23371 * 1 2 3 31 31 H 1.08999 * 109.46799 * 215.23323 * 1 2 3 32 32 H 1.09000 * 109.47199 * 335.23101 * 1 2 3 33 33 H 1.09001 * 109.46874 * 155.22090 * 3 2 1 34 34 H 1.09002 * 109.46763 * 35.22697 * 3 2 1 35 35 H 1.08997 * 114.21014 * 332.68158 * 6 4 3 36 36 H 1.09000 * 114.20716 * 105.50670 * 6 4 3 37 37 H 1.08997 * 113.47068 * 271.29048 * 7 6 4 38 38 H 1.09001 * 113.53009 * 140.85031 * 7 6 4 39 39 H 0.97004 * 120.00091 * 179.97438 * 12 11 9 40 40 H 1.09005 * 109.47348 * 300.00151 * 19 17 2 41 41 H 1.08997 * 109.47212 * 59.99937 * 19 17 2 42 42 H 1.08003 * 120.33952 * 0.43332 * 23 22 21 43 43 H 1.07994 * 120.07000 * 180.02562 * 24 23 22 44 44 H 1.07996 * 119.69835 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.65593 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3388 1.7761 -1.4365 5 1 1.4162 1.6820 -2.0091 6 6 3.5695 1.2173 -2.1638 7 6 3.6563 2.6423 -2.7325 8 7 2.9521 3.1096 -1.5289 9 6 2.8937 4.2737 -0.8102 10 1 2.2091 4.3618 0.0204 11 6 3.7146 5.3406 -1.1491 12 7 4.5487 5.2334 -2.1616 13 14 3.6355 6.9283 -0.1682 14 1 3.9750 6.6511 1.2506 15 1 4.6044 7.9047 -0.7278 16 1 2.2638 7.4917 -0.2480 17 6 2.1389 -1.1672 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3855 -2.4723 -0.0005 20 7 2.3375 -3.5858 -0.0018 21 7 2.8700 -4.2185 -1.1333 22 6 3.6849 -5.1619 -0.7217 23 6 4.4839 -6.0990 -1.4245 24 6 5.2386 -6.9827 -0.7273 25 6 5.2221 -6.9611 0.6824 26 6 4.4636 -6.0699 1.3444 27 7 3.6891 -5.1630 0.6609 28 6 2.8592 -4.1892 1.0858 29 8 2.6204 -3.9062 2.2472 30 1 -0.3633 -0.0937 -1.0234 31 1 -0.3633 -0.8394 0.5929 32 1 -0.3633 0.9331 0.4305 33 1 3.1872 1.1169 0.4307 34 1 1.6520 2.0031 0.5928 35 1 4.3946 0.9483 -1.5043 36 1 3.3410 0.4522 -2.9057 37 1 3.0847 2.7790 -3.6504 38 1 4.6765 3.0178 -2.8116 39 1 5.1221 5.9790 -2.3987 40 1 0.7591 -2.5303 0.8897 41 1 0.7585 -2.5298 -0.8902 42 1 4.4910 -6.1084 -2.5045 43 1 5.8519 -7.7014 -1.2504 44 1 5.8242 -7.6667 1.2354 45 1 4.4629 -6.0665 2.4244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691052998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:34 Heat of formation + Delta-G solvation = 99.435802 kcal Electronic energy + Delta-G solvation = -30061.138968 eV Core-core repulsion = 25890.375183 eV Total energy + Delta-G solvation = -4170.763785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.08870 -41.22456 -39.82712 -39.30146 -38.17358 -36.58225 -34.92718 -34.30107 -33.70454 -30.94061 -29.99403 -29.91433 -28.81675 -27.33841 -25.47558 -25.25624 -24.14206 -23.80894 -22.95700 -21.09528 -20.50539 -19.52795 -18.89153 -18.66693 -18.46456 -17.78344 -17.55019 -17.27684 -16.92096 -16.67507 -16.26126 -15.92598 -15.84789 -15.61778 -15.33689 -15.04861 -14.49493 -14.16410 -14.09514 -13.82849 -13.76835 -13.52165 -13.32424 -13.23009 -13.11387 -12.99243 -12.98259 -12.66048 -12.64938 -12.56714 -12.30792 -11.82137 -11.73128 -11.60616 -11.57769 -11.36334 -11.21360 -10.85208 -10.45515 -9.69199 -8.93912 -8.75326 -7.90375 -5.26183 -0.40597 0.39978 0.54581 1.26515 1.42898 1.45547 1.47974 1.53384 1.78291 2.03623 2.42918 2.46599 2.96098 3.25401 3.32514 3.49717 3.66458 3.78576 3.82963 3.95192 4.02668 4.09438 4.15434 4.24800 4.29141 4.31550 4.38905 4.63435 4.65815 4.69114 4.76016 4.79543 4.93728 4.96010 4.97993 5.01953 5.09623 5.18541 5.28404 5.38355 5.40753 5.48874 5.67090 5.69288 5.91808 6.29258 6.33262 6.64984 6.87372 7.03665 7.58464 8.59547 9.26676 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018591 B = 0.002384 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.752803 B =11739.820180 C =12196.645953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.603 5.603 3 C 0.130 3.870 4 C 0.141 3.859 5 H 0.064 0.936 6 C -0.133 4.133 7 C 0.144 3.856 8 N -0.629 5.629 9 C -0.225 4.225 10 H 0.090 0.910 11 C -0.072 4.072 12 N -0.956 5.956 13 Si 0.982 3.018 14 H -0.277 1.277 15 H -0.296 1.296 16 H -0.272 1.272 17 C 0.489 3.511 18 O -0.574 6.574 19 C 0.145 3.855 20 N -0.422 5.422 21 N -0.313 5.313 22 C 0.289 3.711 23 C -0.141 4.141 24 C -0.022 4.022 25 C -0.154 4.154 26 C 0.084 3.916 27 N -0.483 5.483 28 C 0.634 3.366 29 O -0.579 6.579 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.039 0.961 39 H 0.248 0.752 40 H 0.150 0.850 41 H 0.164 0.836 42 H 0.178 0.822 43 H 0.195 0.805 44 H 0.198 0.802 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.008 -31.017 3.023 31.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.336 5.336 3 C 0.006 3.994 4 C 0.034 3.966 5 H 0.081 0.919 6 C -0.171 4.171 7 C 0.019 3.981 8 N -0.355 5.355 9 C -0.353 4.353 10 H 0.108 0.892 11 C -0.265 4.265 12 N -0.605 5.605 13 Si 0.810 3.190 14 H -0.203 1.203 15 H -0.222 1.222 16 H -0.198 1.198 17 C 0.276 3.724 18 O -0.453 6.453 19 C 0.021 3.979 20 N -0.238 5.238 21 N -0.140 5.140 22 C 0.025 3.975 23 C -0.162 4.162 24 C -0.047 4.047 25 C -0.175 4.175 26 C -0.034 4.034 27 N -0.197 5.197 28 C 0.334 3.666 29 O -0.456 6.456 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.167 0.833 41 H 0.182 0.818 42 H 0.196 0.804 43 H 0.213 0.787 44 H 0.215 0.785 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.109 -29.758 3.173 30.544 hybrid contribution 0.489 1.470 0.923 1.803 sum -5.620 -28.289 4.096 29.131 Atomic orbital electron populations 1.22269 0.76072 1.05323 1.04106 1.47874 1.08925 1.04501 1.72306 1.21481 0.96629 0.83950 0.97350 1.22497 0.95338 0.84141 0.94594 0.91913 1.23357 0.98296 0.95979 0.99516 1.22105 0.96768 0.89995 0.89274 1.45884 1.52403 1.09066 1.28191 1.19280 1.17334 0.89431 1.09223 0.89232 1.25724 0.98748 1.02030 0.99970 1.70042 1.27437 1.31993 1.31010 0.85098 0.77429 0.78615 0.77860 1.20313 1.22216 1.19775 1.21432 0.88193 0.86661 0.76152 1.90729 1.16130 1.87611 1.50848 1.21657 0.88190 0.78546 1.09477 1.48377 1.41652 1.30899 1.02851 1.77754 1.17571 1.11061 1.07581 1.22328 0.97266 0.96786 0.81134 1.20738 0.98498 0.94863 1.02118 1.21811 0.93742 0.95428 0.93673 1.21429 1.00647 0.99976 0.95470 1.22263 0.92272 0.88992 0.99826 1.43591 1.37572 1.29345 1.09225 1.16708 0.82236 0.81864 0.85764 1.91069 1.67515 1.70347 1.16631 0.90113 0.88110 0.89765 0.93105 0.90205 0.92523 0.90826 0.95829 0.94273 0.94353 0.83296 0.81846 0.80443 0.78742 0.78530 0.80679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.06 10.19 127.77 1.30 2.36 16 2 N -0.60 -17.44 2.87 -846.75 -2.43 -19.87 16 3 C 0.13 4.98 5.44 86.38 0.47 5.45 16 4 C 0.14 6.01 4.31 41.78 0.18 6.19 16 5 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 6 C -0.13 -5.94 8.03 30.99 0.25 -5.69 16 7 C 0.14 7.54 7.52 83.23 0.63 8.16 16 8 N -0.63 -33.88 3.65 -713.21 -2.60 -36.48 16 9 C -0.22 -12.90 10.55 84.03 0.89 -12.01 16 10 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 11 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 12 N -0.96 -60.44 11.42 21.65 0.25 -60.19 16 13 Si 0.98 47.03 29.55 68.60 2.03 49.05 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 17 C 0.49 15.77 7.74 87.65 0.68 16.45 16 18 O -0.57 -24.99 15.93 -3.04 -0.05 -25.04 16 19 C 0.15 3.37 5.47 85.63 0.47 3.84 16 20 N -0.42 -12.40 3.11 -481.78 -1.50 -13.90 16 21 N -0.31 -8.80 12.62 -54.71 -0.69 -9.49 16 22 C 0.29 6.65 7.87 134.31 1.06 7.71 16 23 C -0.14 -1.75 10.12 22.52 0.23 -1.53 16 24 C -0.02 -0.12 10.06 22.32 0.22 0.11 16 25 C -0.15 -0.99 9.97 22.08 0.22 -0.77 16 26 C 0.08 1.28 10.90 82.94 0.90 2.18 16 27 N -0.48 -11.90 2.93 -482.32 -1.41 -13.31 16 28 C 0.63 20.16 8.70 179.01 1.56 21.72 16 29 O -0.58 -21.39 17.86 -4.99 -0.09 -21.48 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.01 6.66 -2.39 -0.02 0.99 16 32 H 0.08 1.38 7.89 -2.39 -0.02 1.36 16 33 H 0.05 2.33 7.00 -2.39 -0.02 2.31 16 34 H 0.08 2.94 7.94 -2.39 -0.02 2.92 16 35 H 0.06 2.79 7.94 -2.39 -0.02 2.78 16 36 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.04 2.31 6.92 -2.39 -0.02 2.29 16 39 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.15 2.65 7.37 -2.38 -0.02 2.63 16 41 H 0.16 2.53 8.11 -2.39 -0.02 2.51 16 42 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 43 H 0.20 -0.69 8.06 -2.91 -0.02 -0.71 16 44 H 0.20 -0.37 8.06 -2.91 -0.02 -0.40 16 45 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -94.66 384.39 4.03 -90.62 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.01 Total: 9.69 kcal Atomic # 6 Polarization: 40.87 SS G_CDS: 9.52 Total: 50.39 kcal Atomic # 7 Polarization: -144.86 SS G_CDS: -8.39 Total: -153.24 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.14 Total: -46.51 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.05 kcal Total: -94.66 4.03 -90.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691052998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.059 kcal (2) G-P(sol) polarization free energy of solvation -94.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds