Wall clock time and date at job start Wed Apr 1 2020 03:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40223 * 126.65883 * 2 1 4 4 N 1.28642 * 109.51392 * 179.97438 * 3 2 1 5 5 C 1.35431 * 110.12406 * 359.97438 * 4 3 2 6 6 C 1.39796 * 133.04001 * 180.02562 * 5 4 3 7 7 C 1.38890 * 119.55828 * 179.76962 * 6 5 4 8 8 C 1.47716 * 119.86373 * 180.25037 * 7 6 5 9 9 O 1.21568 * 120.00221 * 0.22807 * 8 7 6 10 10 N 1.34779 * 120.00035 * 180.23591 * 8 7 6 11 11 C 1.46491 * 120.00182 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47368 * 179.97438 * 11 10 8 13 13 O 1.42901 * 110.64329 * 66.68504 * 12 11 10 14 14 C 1.55151 * 110.72329 * 190.02440 * 12 11 10 15 15 C 1.54910 * 101.58385 * 153.86611 * 14 12 11 16 16 N 1.47422 * 104.83075 * 322.98948 * 15 14 12 17 17 C 1.36940 * 125.64805 * 204.16831 * 16 15 14 18 18 H 1.07998 * 120.00095 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99924 * 359.95802 * 17 16 15 20 20 N 1.31618 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99768 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47440 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47070 * 119.99963 * 21 19 17 24 24 H 1.48500 * 109.46841 * 239.99356 * 21 19 17 25 25 C 1.47016 * 108.70221 * 24.12913 * 16 15 14 26 26 C 1.40250 * 120.27069 * 0.48335 * 7 6 5 27 27 C 1.36271 * 120.45457 * 359.48705 * 26 7 6 28 28 C 1.37266 * 126.65614 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46823 * 270.02051 * 1 2 3 30 30 H 1.08996 * 109.47111 * 30.02468 * 1 2 3 31 31 H 1.09002 * 109.47311 * 150.02418 * 1 2 3 32 32 H 1.08003 * 120.22259 * 359.97113 * 6 5 4 33 33 H 0.97004 * 119.99383 * 359.97438 * 10 8 7 34 34 H 1.09004 * 109.47169 * 299.99488 * 11 10 8 35 35 H 1.09000 * 109.47638 * 59.99333 * 11 10 8 36 36 H 0.96705 * 113.99873 * 300.70469 * 13 12 11 37 37 H 1.09005 * 111.00679 * 271.93775 * 14 12 11 38 38 H 1.09000 * 111.01032 * 35.78715 * 14 12 11 39 39 H 1.09006 * 110.36251 * 204.15201 * 15 14 12 40 40 H 1.08995 * 110.37046 * 81.83036 * 15 14 12 41 41 H 0.97007 * 119.99733 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.88527 * 239.52272 * 25 16 15 43 43 H 1.08995 * 109.88515 * 118.36047 * 25 16 15 44 44 H 1.08002 * 119.77500 * 179.76935 * 26 7 6 45 45 H 1.08000 * 119.92368 * 180.25764 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1249 0.0000 4 7 3.5315 0.7457 0.0005 5 6 3.6019 -0.6068 0.0015 6 6 4.6718 -1.5066 0.0028 7 6 4.4186 -2.8722 0.0084 8 6 5.5441 -3.8289 0.0155 9 8 6.6891 -3.4204 0.0205 10 7 5.3016 -5.1547 0.0161 11 6 6.4177 -6.1035 0.0225 12 6 5.8721 -7.5328 0.0225 13 8 5.2033 -7.8168 -1.2080 14 6 7.0102 -8.5549 0.2817 15 6 6.2293 -9.7385 0.9053 16 7 5.1898 -9.1075 1.7387 17 6 4.5719 -9.6839 2.8163 18 1 3.8196 -9.1361 3.3642 19 6 4.9122 -10.9726 3.2040 20 7 5.8284 -11.6406 2.5357 21 14 4.0688 -11.7592 4.6735 22 1 3.0844 -10.8070 5.2476 23 1 3.3681 -12.9945 4.2394 24 1 5.0838 -12.1013 5.7021 25 6 4.9270 -7.7565 1.2218 26 6 3.0988 -3.3466 0.0025 27 6 2.0515 -2.4747 0.0017 28 6 2.2845 -1.1012 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 5.6885 -1.1422 0.0028 33 1 4.3880 -5.4805 0.0123 34 1 7.0314 -5.9485 -0.8649 35 1 7.0234 -5.9461 0.9150 36 1 4.4586 -7.2291 -1.3956 37 1 7.4893 -8.8513 -0.6515 38 1 7.7414 -8.1557 0.9847 39 1 6.8914 -10.3474 1.5211 40 1 5.7723 -10.3453 0.1237 41 1 6.0660 -12.5413 2.8065 42 1 5.1300 -7.0171 1.9966 43 1 3.8898 -7.6795 0.8958 44 1 2.9112 -4.4102 0.0032 45 1 1.0386 -2.8494 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699896210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:22 Heat of formation + Delta-G solvation = 67.227063 kcal Electronic energy + Delta-G solvation = -29493.207449 eV Core-core repulsion = 25321.046988 eV Total energy + Delta-G solvation = -4172.160461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.51562 -40.22748 -38.68254 -37.41709 -35.24290 -35.14527 -34.34134 -32.17205 -31.22962 -31.00781 -29.58266 -28.29654 -27.93188 -25.96365 -24.69102 -23.81203 -23.23628 -21.63905 -21.14565 -20.17848 -19.96312 -18.77564 -17.87780 -17.24149 -16.97849 -16.58713 -16.23029 -16.04539 -15.39400 -15.11174 -14.78900 -14.68671 -14.33357 -14.22206 -14.00153 -13.77903 -13.70385 -13.33789 -13.29531 -13.00125 -12.75727 -12.52622 -12.20713 -12.17056 -12.11598 -11.62986 -11.22465 -11.14935 -11.08110 -10.93068 -10.82704 -10.44986 -10.24922 -10.16110 -9.89976 -9.76050 -9.47228 -9.40989 -9.18443 -8.78561 -8.70059 -6.90893 -5.71075 -3.13638 0.01122 0.43638 1.58913 1.73344 2.53581 2.89873 3.35789 3.40565 3.40833 3.43724 3.60012 3.88748 4.10675 4.32624 4.39419 4.42549 4.43613 4.52404 4.62872 4.69347 4.79683 4.84736 4.99325 5.13497 5.33826 5.37532 5.44547 5.48385 5.58418 5.66802 5.71927 5.83829 5.93764 5.97237 6.11034 6.18722 6.24752 6.34268 6.45292 6.54433 6.57779 7.29475 7.51774 7.52835 7.56455 7.79756 7.88062 8.03023 8.29694 9.15304 9.75839 10.39769 11.32665 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.002300 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.023452 B =12171.718506 C =13351.410483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.398 5.398 3 N -0.007 5.007 4 N -0.207 5.207 5 C -0.028 4.028 6 C 0.037 3.963 7 C -0.149 4.149 8 C 0.563 3.437 9 O -0.534 6.534 10 N -0.721 5.721 11 C 0.104 3.896 12 C 0.104 3.896 13 O -0.542 6.542 14 C -0.128 4.128 15 C 0.155 3.845 16 N -0.599 5.599 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.919 5.919 21 Si 0.915 3.085 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.116 3.884 26 C -0.038 4.038 27 C -0.125 4.125 28 C 0.105 3.895 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.398 0.602 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.364 0.636 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.019 0.981 41 H 0.253 0.747 42 H 0.032 0.968 43 H 0.022 0.978 44 H 0.143 0.857 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.017 19.767 -7.764 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.192 5.192 3 N 0.012 4.988 4 N -0.086 5.086 5 C -0.152 4.152 6 C 0.014 3.986 7 C -0.155 4.155 8 C 0.350 3.650 9 O -0.411 6.411 10 N -0.373 5.373 11 C -0.020 4.020 12 C 0.063 3.937 13 O -0.347 6.347 14 C -0.167 4.167 15 C 0.031 3.969 16 N -0.326 5.326 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.746 3.254 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.011 4.011 26 C -0.060 4.060 27 C -0.147 4.147 28 C -0.017 4.017 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.172 0.828 33 H 0.234 0.766 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.210 0.790 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.040 0.960 44 H 0.161 0.839 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.780 20.925 -7.663 23.951 hybrid contribution -1.794 -1.123 0.783 2.257 sum -10.574 19.802 -6.879 23.479 Atomic orbital electron populations 1.22055 0.72528 1.05396 1.04359 1.50144 1.07999 1.03476 1.57568 1.81656 0.94030 1.07548 1.15536 1.74886 1.11201 1.10379 1.12143 1.19793 0.93056 0.90220 1.12121 1.20580 0.98569 0.89884 0.89599 1.19692 0.93569 0.93342 1.08925 1.17944 0.88283 0.82149 0.76610 1.90806 1.22153 1.78505 1.49644 1.45899 1.10629 1.05617 1.75152 1.22153 0.88954 0.87383 1.03473 1.22575 0.94756 0.91882 0.84491 1.86644 1.48463 1.60017 1.39532 1.23057 0.95620 0.97223 1.00781 1.21951 0.90567 0.91271 0.93138 1.44413 1.44856 1.10727 1.32559 1.19087 1.16144 0.96882 1.03261 0.90480 1.24804 0.99388 0.96811 0.99545 1.69802 1.33967 1.11944 1.41040 0.85994 0.78505 0.79113 0.81817 1.20554 1.21706 1.21663 1.21926 0.95589 0.90215 0.93395 1.20955 0.90822 1.00202 0.94061 1.19708 1.00682 0.87937 1.06385 1.19505 0.90933 0.90637 1.00641 0.89735 0.88333 0.88775 0.82767 0.76624 0.90364 0.89972 0.79031 0.91003 0.90503 0.87404 0.96334 0.93653 0.95070 0.96018 0.83939 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.32 11.52 59.85 0.69 1.01 16 2 N -0.40 -3.34 4.11 -65.43 -0.27 -3.60 16 3 N -0.01 -0.08 13.72 60.35 0.83 0.74 16 4 N -0.21 -2.59 12.40 32.15 0.40 -2.19 16 5 C -0.03 -0.32 7.26 -84.76 -0.62 -0.93 16 6 C 0.04 0.40 9.64 -38.76 -0.37 0.03 16 7 C -0.15 -1.50 5.87 -105.03 -0.62 -2.11 16 8 C 0.56 7.00 7.76 -12.39 -0.10 6.90 16 9 O -0.53 -8.54 16.31 5.31 0.09 -8.45 16 10 N -0.72 -8.07 5.08 -61.30 -0.31 -8.39 16 11 C 0.10 1.41 4.80 -4.05 -0.02 1.39 16 12 C 0.10 1.67 0.93 -88.79 -0.08 1.59 16 13 O -0.54 -8.35 13.10 -35.23 -0.46 -8.81 16 14 C -0.13 -2.35 6.26 -24.58 -0.15 -2.50 16 15 C 0.16 3.70 5.88 -2.53 -0.01 3.68 16 16 N -0.60 -14.74 3.39 -170.08 -0.58 -15.31 16 17 C -0.23 -6.09 10.27 -15.06 -0.15 -6.24 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -26.30 10.09 55.49 0.56 -25.74 16 21 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.12 2.17 5.76 -3.07 -0.02 2.16 16 26 C -0.04 -0.28 9.46 -39.53 -0.37 -0.65 16 27 C -0.12 -0.84 9.97 -39.89 -0.40 -1.24 16 28 C 0.11 0.96 6.93 -84.10 -0.58 0.38 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.15 1.69 7.62 -52.48 -0.40 1.29 16 33 H 0.40 3.49 5.47 -40.82 -0.22 3.27 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.20 8.03 -51.93 -0.42 0.79 16 36 H 0.36 3.94 8.44 45.56 0.38 4.33 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.34 7.96 -51.93 -0.41 0.93 16 39 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.03 0.58 7.82 -51.93 -0.41 0.18 16 43 H 0.02 0.39 8.07 -51.93 -0.42 -0.03 16 44 H 0.14 0.69 6.36 -52.49 -0.33 0.35 16 45 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -35.60 375.58 -7.05 -42.65 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.04 Total: 3.82 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -2.91 Total: 3.09 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.63 Total: -54.48 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.38 Total: -17.26 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.60 -7.05 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699896210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.878 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds