Wall clock time and date at job start Wed Apr 1 2020 03:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40223 * 126.65883 * 2 1 4 4 N 1.28642 * 109.51392 * 179.97438 * 3 2 1 5 5 C 1.35431 * 110.12406 * 359.97438 * 4 3 2 6 6 C 1.39796 * 133.04001 * 180.02562 * 5 4 3 7 7 C 1.38890 * 119.55828 * 179.76962 * 6 5 4 8 8 C 1.47716 * 119.86373 * 180.25037 * 7 6 5 9 9 O 1.21568 * 120.00221 * 0.22807 * 8 7 6 10 10 N 1.34779 * 120.00035 * 180.23591 * 8 7 6 11 11 C 1.46491 * 120.00182 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47368 * 179.97438 * 11 10 8 13 13 O 1.42901 * 110.64329 * 66.68504 * 12 11 10 14 14 C 1.55151 * 110.72329 * 190.02440 * 12 11 10 15 15 C 1.54910 * 101.58385 * 153.86611 * 14 12 11 16 16 N 1.47422 * 104.83075 * 322.98948 * 15 14 12 17 17 C 1.36940 * 125.64805 * 204.16831 * 16 15 14 18 18 H 1.07998 * 120.00095 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99924 * 359.95802 * 17 16 15 20 20 N 1.31618 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99768 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47440 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47070 * 119.99963 * 21 19 17 24 24 H 1.48500 * 109.46841 * 239.99356 * 21 19 17 25 25 C 1.47016 * 108.70221 * 24.12913 * 16 15 14 26 26 C 1.40250 * 120.27069 * 0.48335 * 7 6 5 27 27 C 1.36271 * 120.45457 * 359.48705 * 26 7 6 28 28 C 1.37266 * 126.65614 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46823 * 270.02051 * 1 2 3 30 30 H 1.08996 * 109.47111 * 30.02468 * 1 2 3 31 31 H 1.09002 * 109.47311 * 150.02418 * 1 2 3 32 32 H 1.08003 * 120.22259 * 359.97113 * 6 5 4 33 33 H 0.97004 * 119.99383 * 359.97438 * 10 8 7 34 34 H 1.09004 * 109.47169 * 299.99488 * 11 10 8 35 35 H 1.09000 * 109.47638 * 59.99333 * 11 10 8 36 36 H 0.96705 * 113.99873 * 300.70469 * 13 12 11 37 37 H 1.09005 * 111.00679 * 271.93775 * 14 12 11 38 38 H 1.09000 * 111.01032 * 35.78715 * 14 12 11 39 39 H 1.09006 * 110.36251 * 204.15201 * 15 14 12 40 40 H 1.08995 * 110.37046 * 81.83036 * 15 14 12 41 41 H 0.97007 * 119.99733 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.88527 * 239.52272 * 25 16 15 43 43 H 1.08995 * 109.88515 * 118.36047 * 25 16 15 44 44 H 1.08002 * 119.77500 * 179.76935 * 26 7 6 45 45 H 1.08000 * 119.92368 * 180.25764 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1249 0.0000 4 7 3.5315 0.7457 0.0005 5 6 3.6019 -0.6068 0.0015 6 6 4.6718 -1.5066 0.0028 7 6 4.4186 -2.8722 0.0084 8 6 5.5441 -3.8289 0.0155 9 8 6.6891 -3.4204 0.0205 10 7 5.3016 -5.1547 0.0161 11 6 6.4177 -6.1035 0.0225 12 6 5.8721 -7.5328 0.0225 13 8 5.2033 -7.8168 -1.2080 14 6 7.0102 -8.5549 0.2817 15 6 6.2293 -9.7385 0.9053 16 7 5.1898 -9.1075 1.7387 17 6 4.5719 -9.6839 2.8163 18 1 3.8196 -9.1361 3.3642 19 6 4.9122 -10.9726 3.2040 20 7 5.8284 -11.6406 2.5357 21 14 4.0688 -11.7592 4.6735 22 1 3.0844 -10.8070 5.2476 23 1 3.3681 -12.9945 4.2394 24 1 5.0838 -12.1013 5.7021 25 6 4.9270 -7.7565 1.2218 26 6 3.0988 -3.3466 0.0025 27 6 2.0515 -2.4747 0.0017 28 6 2.2845 -1.1012 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 5.6885 -1.1422 0.0028 33 1 4.3880 -5.4805 0.0123 34 1 7.0314 -5.9485 -0.8649 35 1 7.0234 -5.9461 0.9150 36 1 4.4586 -7.2291 -1.3956 37 1 7.4893 -8.8513 -0.6515 38 1 7.7414 -8.1557 0.9847 39 1 6.8914 -10.3474 1.5211 40 1 5.7723 -10.3453 0.1237 41 1 6.0660 -12.5413 2.8065 42 1 5.1300 -7.0171 1.9966 43 1 3.8898 -7.6795 0.8958 44 1 2.9112 -4.4102 0.0032 45 1 1.0386 -2.8494 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699896210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:20 Heat of formation + Delta-G solvation = 38.796560 kcal Electronic energy + Delta-G solvation = -29494.440288 eV Core-core repulsion = 25321.046988 eV Total energy + Delta-G solvation = -4173.393300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -43.21333 -41.26269 -39.98167 -38.21437 -36.78717 -35.78293 -35.43251 -33.95874 -32.00267 -31.77887 -31.17212 -29.61550 -28.47412 -27.52126 -25.94723 -24.65935 -24.34770 -22.44827 -22.23282 -21.61877 -21.30089 -19.69636 -18.84365 -18.49091 -18.15694 -17.27946 -17.21413 -17.08506 -16.71819 -16.42648 -15.95314 -15.73577 -15.51990 -15.26575 -15.10864 -14.83750 -14.43758 -14.41129 -14.15942 -13.87680 -13.84023 -13.68528 -13.49928 -13.25123 -13.05908 -12.88036 -12.78219 -12.75205 -12.33083 -12.03702 -11.96291 -11.91320 -11.76726 -11.73549 -11.59540 -11.14199 -10.86015 -10.72082 -10.28605 -10.04067 -9.44622 -8.86911 -7.75009 -5.19419 -0.69201 -0.27877 1.03730 1.07070 1.49434 1.50166 1.60131 1.68150 1.94522 2.51161 2.63080 2.92588 3.21421 3.33264 3.35525 3.46688 3.48632 3.62102 3.75526 3.82892 3.95560 3.97226 3.99691 4.23835 4.37394 4.45570 4.52897 4.65191 4.66256 4.72132 4.76890 4.83730 4.85413 4.98965 5.03801 5.04915 5.07293 5.13442 5.25763 5.36558 5.50387 5.58076 5.65175 5.83346 6.32333 6.40802 6.79393 6.86925 7.09899 7.12316 7.80098 8.43484 9.27273 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.002300 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.023452 B =12171.718506 C =13351.410483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.386 5.386 3 N -0.030 5.030 4 N -0.244 5.244 5 C -0.050 4.050 6 C 0.019 3.981 7 C -0.147 4.147 8 C 0.565 3.435 9 O -0.575 6.575 10 N -0.707 5.707 11 C 0.118 3.882 12 C 0.126 3.874 13 O -0.554 6.554 14 C -0.122 4.122 15 C 0.159 3.841 16 N -0.623 5.623 17 C -0.234 4.234 18 H 0.086 0.914 19 C -0.070 4.070 20 N -0.950 5.950 21 Si 0.979 3.021 22 H -0.263 1.263 23 H -0.295 1.295 24 H -0.294 1.294 25 C 0.111 3.889 26 C -0.036 4.036 27 C -0.106 4.106 28 C 0.100 3.900 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.413 0.587 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.387 0.613 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.073 0.927 40 H -0.015 1.015 41 H 0.246 0.754 42 H 0.039 0.961 43 H 0.043 0.957 44 H 0.175 0.825 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 20.318 -7.973 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.180 5.180 3 N -0.010 5.010 4 N -0.122 5.122 5 C -0.175 4.175 6 C -0.005 4.005 7 C -0.154 4.154 8 C 0.354 3.646 9 O -0.456 6.456 10 N -0.360 5.360 11 C -0.007 4.007 12 C 0.085 3.915 13 O -0.361 6.361 14 C -0.161 4.161 15 C 0.034 3.966 16 N -0.349 5.349 17 C -0.363 4.363 18 H 0.104 0.896 19 C -0.263 4.263 20 N -0.600 5.600 21 Si 0.808 3.192 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.222 1.222 25 C -0.015 4.015 26 C -0.058 4.058 27 C -0.128 4.128 28 C -0.023 4.023 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.251 0.749 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.236 0.764 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.003 0.997 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.193 0.807 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.934 21.538 -7.886 25.855 hybrid contribution -0.952 -1.263 0.807 1.776 sum -12.886 20.274 -7.079 25.044 Atomic orbital electron populations 1.22573 0.69551 1.07453 1.06017 1.50527 1.09452 1.02497 1.55566 1.81548 0.94187 1.08989 1.16274 1.74847 1.12091 1.11482 1.13814 1.19991 0.94403 0.90037 1.13030 1.20498 0.98100 0.90616 0.91247 1.19548 0.94170 0.92204 1.09482 1.18250 0.88279 0.82501 0.75596 1.90792 1.24039 1.79166 1.51558 1.45681 1.10836 1.04898 1.74592 1.21839 0.89380 0.86118 1.03324 1.22176 0.93116 0.92356 0.83899 1.86614 1.49614 1.61196 1.38667 1.22905 0.96115 0.95868 1.01169 1.21649 0.90346 0.92831 0.91800 1.44698 1.45026 1.12837 1.32335 1.19500 1.15876 0.97092 1.03792 0.89606 1.25646 1.00504 0.97734 1.02374 1.70064 1.35542 1.11807 1.42603 0.84995 0.77560 0.78074 0.78605 1.18728 1.22209 1.22174 1.22167 0.97342 0.87437 0.94521 1.21255 0.89309 1.01916 0.93270 1.20154 1.02526 0.86325 1.03753 1.19839 0.90095 0.91826 1.00552 0.88172 0.87345 0.85776 0.84341 0.74857 0.89961 0.90878 0.76400 0.89690 0.89640 0.90920 0.99654 0.94436 0.94277 0.93895 0.80742 0.79980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 11.52 127.77 1.47 1.72 16 2 N -0.39 -5.62 4.11 -360.93 -1.48 -7.10 16 3 N -0.03 -0.66 13.72 37.02 0.51 -0.16 16 4 N -0.24 -6.28 12.40 -52.21 -0.65 -6.93 16 5 C -0.05 -1.12 7.26 39.57 0.29 -0.83 16 6 C 0.02 0.41 9.64 22.80 0.22 0.63 16 7 C -0.15 -2.71 5.87 -20.13 -0.12 -2.83 16 8 C 0.57 13.14 7.76 86.75 0.67 13.81 16 9 O -0.58 -18.30 16.31 -3.93 -0.06 -18.36 16 10 N -0.71 -13.72 5.08 -466.12 -2.37 -16.09 16 11 C 0.12 2.91 4.80 86.38 0.41 3.33 16 12 C 0.13 3.73 0.93 -9.61 -0.01 3.72 16 13 O -0.55 -15.34 13.10 -148.98 -1.95 -17.29 16 14 C -0.12 -4.37 6.26 31.98 0.20 -4.17 16 15 C 0.16 7.70 5.88 86.86 0.51 8.21 16 16 N -0.62 -30.27 3.39 -692.00 -2.35 -32.62 16 17 C -0.23 -12.48 10.27 84.03 0.86 -11.62 16 18 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 19 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 20 N -0.95 -55.91 10.09 21.65 0.22 -55.70 16 21 Si 0.98 44.38 29.55 68.60 2.03 46.40 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 C 0.11 3.89 5.76 86.73 0.50 4.39 16 26 C -0.04 -0.37 9.46 22.30 0.21 -0.16 16 27 C -0.11 -0.95 9.97 22.07 0.22 -0.73 16 28 C 0.10 1.59 6.93 39.15 0.27 1.86 16 29 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.12 -0.34 8.14 -2.39 -0.02 -0.35 16 32 H 0.14 3.32 7.62 -2.91 -0.02 3.30 16 33 H 0.41 5.43 5.47 -92.71 -0.51 4.92 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 2.00 8.03 -2.39 -0.02 1.99 16 36 H 0.39 6.72 8.44 -74.05 -0.62 6.10 16 37 H 0.08 2.81 8.14 -2.38 -0.02 2.80 16 38 H 0.09 2.91 7.96 -2.39 -0.02 2.89 16 39 H 0.07 4.04 5.87 -2.38 -0.01 4.03 16 40 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 41 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 42 H 0.04 1.34 7.82 -2.38 -0.02 1.32 16 43 H 0.04 1.35 8.07 -2.39 -0.02 1.34 16 44 H 0.18 0.67 6.36 -2.91 -0.02 0.65 16 45 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 Total: -1.00 -81.72 375.58 0.00 -81.72 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -0.08 Total: 12.20 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 6.18 Total: 13.92 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -6.12 Total: -118.59 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -2.02 Total: -35.65 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -81.72 0.00 -81.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699896210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.515 kcal (2) G-P(sol) polarization free energy of solvation -81.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds