Wall clock time and date at job start Wed Apr 1 2020 04:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36942 * 119.99754 * 2 1 4 4 H 1.07997 * 119.99467 * 149.88602 * 3 2 1 5 5 C 1.38807 * 120.00107 * 330.15932 * 3 2 1 6 6 N 1.31621 * 120.00002 * 167.08689 * 5 3 2 7 7 Si 1.86797 * 120.00070 * 347.09242 * 5 3 2 8 8 H 1.48493 * 109.47440 * 84.04856 * 7 5 3 9 9 H 1.48499 * 109.47207 * 204.04951 * 7 5 3 10 10 H 1.48497 * 109.47050 * 324.04710 * 7 5 3 11 11 C 1.46496 * 119.99807 * 179.97438 * 2 1 3 12 12 C 1.53008 * 109.47044 * 276.87497 * 11 2 1 13 13 H 1.08999 * 109.87282 * 64.87312 * 12 11 2 14 14 C 1.54321 * 109.88275 * 186.05017 * 12 11 2 15 15 C 1.55157 * 102.94183 * 141.60936 * 14 12 11 16 16 C 1.54910 * 101.58134 * 324.50185 * 15 14 12 17 17 N 1.47021 * 109.88311 * 303.85993 * 12 11 2 18 18 C 1.34785 * 125.64858 * 61.60532 * 17 12 11 19 19 O 1.21681 * 119.99912 * 7.43246 * 18 17 12 20 20 C 1.46817 * 120.00176 * 187.42978 * 18 17 12 21 21 C 1.41297 * 126.50079 * 1.49377 * 20 18 17 22 22 N 1.30367 * 108.46354 * 180.02562 * 21 20 18 23 23 N 1.39986 * 109.30593 * 359.97438 * 22 21 20 24 24 C 1.35989 * 108.16735 * 359.73553 * 23 22 21 25 25 N 1.37178 * 120.54728 * 179.60690 * 24 23 22 26 26 H 0.96997 * 119.87857 * 180.30150 * 25 24 23 27 27 C 1.36355 * 120.24062 * 0.59138 * 25 24 23 28 28 C 1.35244 * 119.83356 * 359.71032 * 27 25 24 29 29 C 1.34861 * 131.92143 * 179.97438 * 23 22 21 30 30 O 1.21818 * 120.11837 * 0.02562 * 29 23 22 31 31 H 1.09006 * 109.46766 * 95.27166 * 1 2 3 32 32 H 1.08991 * 109.47421 * 215.27252 * 1 2 3 33 33 H 1.09005 * 109.47160 * 335.27650 * 1 2 3 34 34 H 0.96994 * 119.99998 * 180.02562 * 6 5 3 35 35 H 1.08999 * 109.47335 * 36.87717 * 11 2 1 36 36 H 1.09003 * 109.46868 * 156.88289 * 11 2 1 37 37 H 1.08996 * 110.72232 * 259.97677 * 14 12 11 38 38 H 1.09000 * 110.71679 * 23.25284 * 14 12 11 39 39 H 1.08995 * 111.00691 * 206.42627 * 15 14 12 40 40 H 1.09004 * 111.00208 * 82.57420 * 15 14 12 41 41 H 1.08996 * 110.36506 * 278.16601 * 16 15 14 42 42 H 1.09006 * 110.36944 * 155.84747 * 16 15 14 43 43 H 1.08004 * 125.76676 * 359.97185 * 21 20 18 44 44 H 1.08001 * 120.08241 * 179.68681 * 27 25 24 45 45 H 1.08002 * 120.15126 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1203 1.2490 0.4693 5 6 1.5937 2.3084 -0.5981 6 7 2.1187 3.4963 -0.3844 7 14 0.1002 2.1330 -1.7064 8 1 -1.1318 2.1150 -0.8777 9 1 0.0460 3.2792 -2.6490 10 1 0.1993 0.8655 -2.4736 11 6 2.1975 -1.2687 0.0006 12 6 2.3029 -1.7961 1.4330 13 1 1.3103 -2.0377 1.8129 14 6 3.2007 -3.0508 1.4656 15 6 3.9932 -2.8768 2.7881 16 6 4.1884 -1.3407 2.8339 17 7 2.9348 -0.7848 2.2929 18 6 2.4488 0.4470 2.5444 19 8 1.3385 0.7545 2.1531 20 6 3.2592 1.4177 3.2905 21 6 4.5693 1.2184 3.7808 22 7 4.9525 2.3061 4.3888 23 7 3.9270 3.2569 4.3265 24 6 2.8846 2.7122 3.6439 25 7 1.7334 3.4299 3.4402 26 1 0.9942 3.0302 2.9558 27 6 1.6267 4.7051 3.9112 28 6 2.6580 5.2613 4.5865 29 6 3.8368 4.5171 4.7983 30 8 4.7703 5.0106 5.4057 31 1 -0.3633 -0.0944 -1.0234 32 1 -0.3634 -0.8389 0.5934 33 1 -0.3634 0.9335 0.4298 34 1 1.7299 4.2806 -0.8020 35 1 1.6672 -1.9947 -0.6158 36 1 3.1977 -1.1110 -0.4030 37 1 2.5960 -3.9572 1.4947 38 1 3.8762 -3.0640 0.6102 39 1 4.9529 -3.3913 2.7391 40 1 3.4097 -3.2222 3.6415 41 1 5.0334 -1.0470 2.2114 42 1 4.3389 -1.0079 3.8609 43 1 5.1540 0.3170 3.6712 44 1 0.7211 5.2695 3.7449 45 1 2.5792 6.2711 4.9614 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700358981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:34 Heat of formation + Delta-G solvation = 88.272391 kcal Electronic energy + Delta-G solvation = -32692.866970 eV Core-core repulsion = 28521.619104 eV Total energy + Delta-G solvation = -4171.247867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.70936 -40.99756 -39.84108 -38.98160 -37.86987 -37.08956 -34.07084 -33.46049 -32.59188 -32.18651 -31.10462 -30.19843 -27.86815 -26.88196 -25.49972 -25.43841 -24.24246 -23.03728 -22.14729 -21.77025 -20.35017 -19.48802 -19.19234 -18.88770 -18.10682 -17.79552 -17.71675 -17.15237 -16.96785 -16.57223 -16.08654 -15.71141 -15.20630 -15.04486 -14.93416 -14.60188 -14.48115 -14.26002 -14.21245 -14.15327 -14.01618 -13.77748 -13.63894 -13.31593 -13.09189 -12.98472 -12.24825 -12.19324 -11.97321 -11.82498 -11.79981 -11.70668 -11.58017 -11.42917 -11.38870 -11.07807 -10.63673 -10.48648 -10.36648 -9.41695 -8.95074 -8.27612 -7.89349 -5.19462 -0.08260 -0.07256 0.87434 1.17906 1.38338 1.47783 1.52955 1.65229 2.21999 2.33397 2.58480 2.84899 3.15673 3.35907 3.47503 3.60936 3.77535 3.86070 3.90861 3.96529 4.07601 4.23425 4.28543 4.45168 4.51923 4.57771 4.59632 4.70590 4.76722 4.77206 4.86330 4.96494 5.06234 5.11034 5.14947 5.19876 5.27419 5.32391 5.35637 5.55889 5.76051 5.88768 5.90585 5.95180 6.11080 6.32311 6.70313 7.01894 7.17736 7.80221 7.88808 8.27452 9.29547 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009898 B = 0.006181 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.212995 B = 4528.582188 C = 6752.204607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.607 5.607 3 C -0.170 4.170 4 H 0.046 0.954 5 C -0.033 4.033 6 N -0.958 5.958 7 Si 0.947 3.053 8 H -0.285 1.285 9 H -0.332 1.332 10 H -0.283 1.283 11 C 0.136 3.864 12 C 0.123 3.877 13 H 0.054 0.946 14 C -0.117 4.117 15 C -0.117 4.117 16 C 0.079 3.921 17 N -0.613 5.613 18 C 0.608 3.392 19 O -0.517 6.517 20 C -0.306 4.306 21 C 0.121 3.879 22 N -0.315 5.315 23 N -0.369 5.369 24 C 0.368 3.632 25 N -0.570 5.570 26 H 0.448 0.552 27 C 0.222 3.778 28 C -0.330 4.330 29 C 0.548 3.452 30 O -0.554 6.554 31 H -0.006 1.006 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.248 0.752 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.243 0.757 44 H 0.244 0.756 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 -11.157 8.425 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.330 5.330 3 C -0.301 4.301 4 H 0.064 0.936 5 C -0.225 4.225 6 N -0.608 5.608 7 Si 0.781 3.219 8 H -0.212 1.212 9 H -0.263 1.263 10 H -0.209 1.209 11 C 0.009 3.991 12 C 0.018 3.982 13 H 0.072 0.928 14 C -0.155 4.155 15 C -0.155 4.155 16 C -0.044 4.044 17 N -0.349 5.349 18 C 0.396 3.604 19 O -0.393 6.393 20 C -0.324 4.324 21 C -0.067 4.067 22 N -0.132 5.132 23 N -0.169 5.169 24 C 0.144 3.856 25 N -0.184 5.184 26 H 0.291 0.709 27 C 0.092 3.908 28 C -0.358 4.358 29 C 0.351 3.649 30 O -0.431 6.431 31 H 0.012 0.988 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.258 0.742 44 H 0.260 0.740 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.369 -9.793 9.256 13.544 hybrid contribution -1.412 0.219 -1.554 2.111 sum -2.781 -9.575 7.702 12.599 Atomic orbital electron populations 1.21093 0.84638 1.00318 0.95802 1.44004 1.00862 1.02197 1.85913 1.18440 1.00281 0.86705 1.24632 0.93620 1.25517 1.00192 0.95651 1.01186 1.69910 1.44363 0.97815 1.48688 0.86109 0.82003 0.74101 0.79650 1.21177 1.26270 1.20904 1.21435 0.95913 0.86860 0.94874 1.22233 0.96567 0.88054 0.91396 0.92753 1.22637 0.98305 0.95625 0.98975 1.22735 1.02112 0.93051 0.97574 1.22842 0.86881 0.95494 0.99141 1.47903 1.24542 1.13056 1.49399 1.16091 0.85467 0.80184 0.78612 1.90750 1.21158 1.77144 1.50208 1.19761 0.99274 0.94511 1.18878 1.25351 0.93011 0.97414 0.90920 1.77397 1.09417 0.98836 1.27562 1.48098 1.11920 1.14160 1.42727 1.18940 0.83329 0.91401 0.91947 1.41362 1.14107 1.13075 1.49897 0.70933 1.23281 1.01135 0.81601 0.84772 1.21808 0.91976 1.05197 1.16862 1.18039 0.90560 0.77709 0.78625 1.90815 1.41603 1.68483 1.42231 0.98836 0.93483 0.94200 0.94288 0.92159 0.93331 0.88479 0.89966 0.87387 0.90186 0.91262 0.89538 0.74162 0.74014 0.77772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.34 7.05 127.77 0.90 6.24 16 2 N -0.61 -26.60 1.47 -726.92 -1.07 -27.67 16 3 C -0.17 -8.83 6.53 84.03 0.55 -8.28 16 4 H 0.05 2.66 6.76 -2.91 -0.02 2.64 16 5 C -0.03 -1.83 5.34 84.86 0.45 -1.38 16 6 N -0.96 -56.08 13.97 21.65 0.30 -55.78 16 7 Si 0.95 46.99 23.95 68.60 1.64 48.64 16 8 H -0.28 -13.50 6.48 99.48 0.64 -12.85 16 9 H -0.33 -17.25 7.11 99.48 0.71 -16.54 16 10 H -0.28 -13.88 6.43 99.48 0.64 -13.25 16 11 C 0.14 4.65 5.32 86.38 0.46 5.11 16 12 C 0.12 3.38 3.31 45.34 0.15 3.53 16 13 H 0.05 1.60 8.11 -2.39 -0.02 1.58 16 14 C -0.12 -1.98 6.48 31.78 0.21 -1.77 16 15 C -0.12 -1.62 7.09 31.99 0.23 -1.39 16 16 C 0.08 1.61 5.10 86.86 0.44 2.06 16 17 N -0.61 -18.57 3.06 -792.55 -2.43 -21.00 16 18 C 0.61 23.01 4.98 86.49 0.43 23.44 16 19 O -0.52 -22.27 10.25 -4.29 -0.04 -22.32 16 20 C -0.31 -11.44 6.09 -20.02 -0.12 -11.56 16 21 C 0.12 4.00 10.34 85.66 0.89 4.88 16 22 N -0.31 -12.39 12.54 -56.31 -0.71 -13.10 16 23 N -0.37 -14.84 3.79 -315.77 -1.20 -16.03 16 24 C 0.37 14.00 7.78 132.61 1.03 15.03 16 25 N -0.57 -18.14 5.39 -191.03 -1.03 -19.17 16 26 H 0.45 14.83 7.78 -92.71 -0.72 14.11 16 27 C 0.22 5.11 11.25 83.30 0.94 6.05 16 28 C -0.33 -9.01 9.95 22.26 0.22 -8.79 16 29 C 0.55 21.39 7.70 84.91 0.65 22.04 16 30 O -0.55 -25.16 17.90 -4.73 -0.08 -25.25 16 31 H -0.01 -0.26 5.32 -2.38 -0.01 -0.27 16 32 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 33 H 0.04 1.85 5.33 -2.38 -0.01 1.84 16 34 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.06 1.83 8.12 -2.39 -0.02 1.81 16 36 H 0.05 1.75 7.89 -2.39 -0.02 1.73 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.34 7.79 -2.39 -0.02 1.32 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.39 7.84 -2.39 -0.02 1.37 16 42 H 0.09 1.57 5.76 -2.38 -0.01 1.56 16 43 H 0.24 5.65 4.67 -2.91 -0.01 5.63 16 44 H 0.24 2.54 8.06 -2.91 -0.02 2.51 16 45 H 0.21 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -83.77 348.96 3.02 -80.75 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.21 Total: 15.72 kcal Atomic # 6 Polarization: 47.79 SS G_CDS: 7.43 Total: 55.21 kcal Atomic # 7 Polarization: -146.63 SS G_CDS: -6.13 Total: -152.75 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -0.13 Total: -47.56 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.64 Total: 48.64 kcal Total: -83.77 3.02 -80.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700358981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.018 kcal (2) G-P(sol) polarization free energy of solvation -83.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds