Wall clock time and date at job start Wed Apr 1 2020 04:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46506 * 120.00077 * 2 1 4 4 C 1.52997 * 109.47118 * 270.00382 * 3 2 1 5 5 H 1.08997 * 109.47653 * 59.99530 * 4 3 2 6 6 O 1.42912 * 109.46816 * 299.99779 * 4 3 2 7 7 C 1.52999 * 109.47110 * 180.02562 * 4 3 2 8 8 N 1.46500 * 109.46856 * 184.99612 * 7 4 3 9 9 C 1.36942 * 119.99544 * 180.02562 * 8 7 4 10 10 H 1.07996 * 120.00147 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99696 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00148 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99724 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47211 * 60.00078 * 13 11 9 15 15 H 1.48500 * 109.47029 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47279 * 299.99715 * 13 11 9 17 17 C 1.34774 * 119.99892 * 179.97438 * 2 1 3 18 18 O 1.21511 * 119.99834 * 184.84649 * 17 2 1 19 19 C 1.48157 * 120.00100 * 4.85365 * 17 2 1 20 20 C 1.39949 * 120.88997 * 322.09650 * 19 17 2 21 21 C 1.38046 * 119.13549 * 180.02562 * 20 19 17 22 22 N 1.31855 * 120.98055 * 359.97438 * 21 20 19 23 23 C 1.32229 * 121.97095 * 0.02562 * 22 21 20 24 24 N 1.39846 * 119.62143 * 179.97438 * 23 22 21 25 25 C 1.37175 * 126.48792 * 4.71940 * 24 23 22 26 26 C 1.34614 * 106.82924 * 179.83844 * 25 24 23 27 27 N 1.34148 * 108.21797 * 0.42120 * 26 25 24 28 28 C 1.30479 * 109.36943 * 359.73096 * 27 26 25 29 29 C 1.38902 * 120.75040 * 359.97438 * 23 22 21 30 30 H 1.09002 * 109.46713 * 264.79895 * 1 2 3 31 31 H 1.09002 * 109.47175 * 24.79750 * 1 2 3 32 32 H 1.08994 * 109.47179 * 144.79739 * 1 2 3 33 33 H 1.09002 * 109.46836 * 29.99775 * 3 2 1 34 34 H 1.08996 * 109.46777 * 149.99918 * 3 2 1 35 35 H 0.96696 * 113.99753 * 300.00172 * 6 4 3 36 36 H 1.08995 * 109.47096 * 304.99678 * 7 4 3 37 37 H 1.09001 * 109.47063 * 64.99375 * 7 4 3 38 38 H 0.96990 * 120.00334 * 359.97438 * 8 7 4 39 39 H 0.97000 * 120.00210 * 180.02562 * 12 11 9 40 40 H 1.07999 * 120.43106 * 0.02562 * 20 19 17 41 41 H 1.07998 * 119.50528 * 180.02562 * 21 20 19 42 42 H 1.08004 * 126.58336 * 359.95795 * 25 24 23 43 43 H 1.08006 * 125.89136 * 180.12810 * 26 25 24 44 44 H 1.08003 * 125.72066 * 179.97438 * 28 27 26 45 45 H 1.08008 * 120.52486 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5001 1.8408 -1.9563 6 8 3.2248 0.7145 -2.1162 7 6 3.2181 3.0352 -1.4425 8 7 3.3580 3.5182 -2.8184 9 6 4.0132 4.6946 -3.0677 10 1 4.4264 5.2664 -2.2500 11 6 4.1454 5.1526 -4.3714 12 7 3.6413 4.4561 -5.3680 13 14 5.0385 6.7577 -4.7114 14 1 6.4371 6.6591 -4.2223 15 1 5.0421 7.0222 -6.1726 16 1 4.3458 7.8679 -4.0096 17 6 2.1389 -1.1672 0.0005 18 8 3.3507 -1.1690 0.0894 19 6 1.4021 -2.4480 -0.1075 20 6 0.1715 -2.6254 0.5350 21 6 -0.4837 -3.8340 0.4104 22 7 0.0328 -4.8158 -0.3023 23 6 1.1922 -4.6932 -0.9262 24 7 1.6946 -5.7666 -1.6685 25 6 1.0606 -6.9589 -1.9102 26 6 1.8952 -7.6981 -2.6646 27 7 3.0132 -6.9867 -2.8733 28 6 2.9058 -5.8284 -2.2822 29 6 1.9166 -3.5103 -0.8528 30 1 -0.3633 -0.0932 1.0235 31 1 -0.3634 0.9329 -0.4310 32 1 -0.3633 -0.8397 -0.5924 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1384 0.5138 35 1 4.0873 0.5460 -1.7126 36 1 2.6711 3.7709 -0.8529 37 1 4.2063 2.8837 -1.0083 38 1 2.9872 3.0046 -3.5529 39 1 3.7340 4.7760 -6.2790 40 1 -0.2599 -1.8271 1.1207 41 1 -1.4339 -3.9773 0.9034 42 1 0.0794 -7.2480 -1.5636 43 1 1.7005 -8.6942 -3.0338 44 1 3.6540 -5.0496 -2.2804 45 1 2.8630 -3.4140 -1.3643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700957956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:40 Heat of formation + Delta-G solvation = 58.625495 kcal Electronic energy + Delta-G solvation = -29306.300616 eV Core-core repulsion = 25133.767163 eV Total energy + Delta-G solvation = -4172.533453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.71644 -41.11746 -39.65515 -37.42437 -35.73770 -34.61740 -34.04884 -33.29718 -31.38052 -30.72799 -29.67676 -29.46548 -27.34423 -26.21568 -24.62160 -24.46752 -22.83780 -21.83855 -21.30926 -21.19333 -20.26230 -18.83344 -17.51870 -17.19733 -16.88087 -16.70937 -16.66032 -16.12533 -15.80308 -15.42956 -15.10586 -14.98336 -14.46515 -14.32783 -14.24032 -14.19048 -13.93766 -13.69581 -13.66078 -13.44819 -13.03808 -12.88282 -12.52698 -12.28235 -12.16459 -11.64014 -11.17087 -10.97905 -10.84765 -10.81437 -10.67342 -10.49590 -10.46808 -10.22120 -10.07757 -9.83174 -9.70961 -9.25159 -8.91734 -8.85391 -8.75033 -6.95241 -5.77056 -3.06978 0.05337 0.28834 1.73741 1.94863 2.39507 2.62895 2.79079 3.22933 3.42767 3.47006 3.48497 3.66480 3.83323 4.10593 4.24127 4.30571 4.40585 4.53583 4.66515 4.73021 4.76259 4.86378 4.88993 4.99532 5.04413 5.13599 5.17275 5.29170 5.31460 5.40351 5.48051 5.57514 5.62129 5.69204 5.80386 5.90021 6.10883 6.25967 6.31874 6.46225 6.66210 6.69620 6.97733 7.17220 7.62782 7.66089 7.76749 8.07209 8.40973 9.52312 10.09441 10.44806 11.45205 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.002201 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.915390 B =12720.582349 C =14058.033302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.597 5.597 3 C 0.083 3.917 4 C 0.085 3.915 5 H 0.097 0.903 6 O -0.549 6.549 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.245 4.245 10 H 0.069 0.931 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.909 3.091 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.565 3.435 18 O -0.517 6.517 19 C -0.046 4.046 20 C -0.164 4.164 21 C 0.132 3.868 22 N -0.488 5.488 23 C 0.346 3.654 24 N -0.412 5.412 25 C -0.028 4.028 26 C -0.029 4.029 27 N -0.477 5.477 28 C 0.198 3.802 29 C -0.125 4.125 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.374 0.626 36 H 0.025 0.975 37 H 0.022 0.978 38 H 0.388 0.612 39 H 0.256 0.744 40 H 0.157 0.843 41 H 0.174 0.826 42 H 0.182 0.818 43 H 0.177 0.823 44 H 0.214 0.786 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.475 -19.555 15.785 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.329 5.329 3 C -0.040 4.040 4 C 0.025 3.975 5 H 0.115 0.885 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.376 4.376 10 H 0.087 0.913 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.351 3.649 18 O -0.393 6.393 19 C -0.058 4.058 20 C -0.185 4.185 21 C -0.026 4.026 22 N -0.200 5.200 23 C 0.118 3.882 24 N -0.095 5.095 25 C -0.157 4.157 26 C -0.174 4.174 27 N -0.193 5.193 28 C -0.083 4.083 29 C -0.148 4.148 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.222 0.778 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.222 0.778 39 H 0.066 0.934 40 H 0.175 0.825 41 H 0.191 0.809 42 H 0.199 0.801 43 H 0.194 0.806 44 H 0.231 0.769 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.063 -20.428 14.953 28.042 hybrid contribution 0.371 1.891 0.421 1.972 sum -11.692 -18.537 15.373 26.770 Atomic orbital electron populations 1.22237 0.79423 1.04412 1.01518 1.47540 1.07039 1.05783 1.72523 1.22394 0.98523 0.83917 0.99142 1.22514 0.95868 0.88475 0.90673 0.88517 1.86550 1.33059 1.58913 1.56900 1.21223 0.96803 0.92302 0.89885 1.42233 1.68078 1.25348 1.01338 1.19167 1.28383 0.97869 0.92175 0.91292 1.24768 1.01414 0.99051 0.95616 1.69666 1.50143 1.39308 0.98685 0.86253 0.79562 0.83329 0.76926 1.21220 1.21637 1.21269 1.17945 0.86935 0.82969 0.77016 1.90797 1.13084 1.86750 1.48658 1.20192 0.94549 0.94530 0.96511 1.22769 0.94579 1.00129 1.00977 1.22585 0.99255 0.87209 0.93544 1.66856 1.10680 1.33646 1.08807 1.17994 0.91092 0.86140 0.92971 1.43148 1.15609 1.12060 1.38643 1.22918 1.01495 0.85997 1.05309 1.22438 0.91026 1.01219 1.02701 1.70370 1.24494 1.03252 1.21193 1.25501 0.87414 0.98588 0.96803 1.21602 1.01715 0.90819 1.00643 0.91885 0.89989 0.90633 0.89052 0.88965 0.77824 0.95730 0.96039 0.77753 0.93399 0.82520 0.80851 0.80055 0.80594 0.76923 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 8.87 59.85 0.53 0.95 16 2 N -0.60 -5.99 2.83 -182.57 -0.52 -6.50 16 3 C 0.08 0.94 5.15 -4.04 -0.02 0.92 16 4 C 0.09 1.31 3.27 -26.73 -0.09 1.23 16 5 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 6 O -0.55 -9.65 12.20 -37.23 -0.45 -10.10 16 7 C 0.13 2.42 5.90 -4.04 -0.02 2.39 16 8 N -0.73 -18.44 5.55 -59.91 -0.33 -18.77 16 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 10 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 11 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 12 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 13 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 C 0.56 6.61 6.85 -12.19 -0.08 6.52 16 18 O -0.52 -7.68 15.62 3.35 0.05 -7.63 16 19 C -0.05 -0.44 5.29 -104.68 -0.55 -0.99 16 20 C -0.16 -1.02 7.67 -39.01 -0.30 -1.31 16 21 C 0.13 0.80 11.17 -17.61 -0.20 0.60 16 22 N -0.49 -4.37 9.87 -12.34 -0.12 -4.49 16 23 C 0.35 3.46 7.50 -154.42 -1.16 2.30 16 24 N -0.41 -4.28 2.98 -63.85 -0.19 -4.47 16 25 C -0.03 -0.27 11.17 -16.44 -0.18 -0.45 16 26 C -0.03 -0.29 11.85 -17.82 -0.21 -0.50 16 27 N -0.48 -5.76 11.24 -14.47 -0.16 -5.93 16 28 C 0.20 2.10 11.89 -89.59 -1.07 1.03 16 29 C -0.12 -1.24 9.14 -38.83 -0.35 -1.60 16 30 H 0.06 0.22 6.88 -51.93 -0.36 -0.13 16 31 H 0.08 0.49 8.03 -51.93 -0.42 0.08 16 32 H 0.08 0.44 5.83 -51.93 -0.30 0.14 16 33 H 0.09 0.81 8.07 -51.93 -0.42 0.40 16 34 H 0.09 1.11 7.36 -51.93 -0.38 0.73 16 35 H 0.37 6.12 8.61 45.56 0.39 6.51 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.39 10.67 7.67 -40.82 -0.31 10.36 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.16 0.54 5.27 -52.49 -0.28 0.27 16 41 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.18 1.25 8.06 -52.48 -0.42 0.83 16 44 H 0.21 1.67 7.07 -52.48 -0.37 1.30 16 45 H 0.15 1.49 6.78 -52.48 -0.36 1.13 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -37.29 381.73 -9.11 -46.40 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -4.89 Total: 12.50 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -3.95 Total: 3.61 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -0.60 Total: -67.99 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.40 Total: -17.73 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.29 -9.11 -46.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700957956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.026 kcal (2) G-P(sol) polarization free energy of solvation -37.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds