Wall clock time and date at job start Wed Apr 1 2020 04:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46506 * 120.00077 * 2 1 4 4 C 1.52997 * 109.47118 * 270.00382 * 3 2 1 5 5 H 1.08997 * 109.47653 * 59.99530 * 4 3 2 6 6 O 1.42912 * 109.46816 * 299.99779 * 4 3 2 7 7 C 1.52999 * 109.47110 * 180.02562 * 4 3 2 8 8 N 1.46500 * 109.46856 * 184.99612 * 7 4 3 9 9 C 1.36942 * 119.99544 * 180.02562 * 8 7 4 10 10 H 1.07996 * 120.00147 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99696 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00148 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99724 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47211 * 60.00078 * 13 11 9 15 15 H 1.48500 * 109.47029 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47279 * 299.99715 * 13 11 9 17 17 C 1.34774 * 119.99892 * 179.97438 * 2 1 3 18 18 O 1.21511 * 119.99834 * 184.84649 * 17 2 1 19 19 C 1.48157 * 120.00100 * 4.85365 * 17 2 1 20 20 C 1.39949 * 120.88997 * 322.09650 * 19 17 2 21 21 C 1.38046 * 119.13549 * 180.02562 * 20 19 17 22 22 N 1.31855 * 120.98055 * 359.97438 * 21 20 19 23 23 C 1.32229 * 121.97095 * 0.02562 * 22 21 20 24 24 N 1.39846 * 119.62143 * 179.97438 * 23 22 21 25 25 C 1.37175 * 126.48792 * 4.71940 * 24 23 22 26 26 C 1.34614 * 106.82924 * 179.83844 * 25 24 23 27 27 N 1.34148 * 108.21797 * 0.42120 * 26 25 24 28 28 C 1.30479 * 109.36943 * 359.73096 * 27 26 25 29 29 C 1.38902 * 120.75040 * 359.97438 * 23 22 21 30 30 H 1.09002 * 109.46713 * 264.79895 * 1 2 3 31 31 H 1.09002 * 109.47175 * 24.79750 * 1 2 3 32 32 H 1.08994 * 109.47179 * 144.79739 * 1 2 3 33 33 H 1.09002 * 109.46836 * 29.99775 * 3 2 1 34 34 H 1.08996 * 109.46777 * 149.99918 * 3 2 1 35 35 H 0.96696 * 113.99753 * 300.00172 * 6 4 3 36 36 H 1.08995 * 109.47096 * 304.99678 * 7 4 3 37 37 H 1.09001 * 109.47063 * 64.99375 * 7 4 3 38 38 H 0.96990 * 120.00334 * 359.97438 * 8 7 4 39 39 H 0.97000 * 120.00210 * 180.02562 * 12 11 9 40 40 H 1.07999 * 120.43106 * 0.02562 * 20 19 17 41 41 H 1.07998 * 119.50528 * 180.02562 * 21 20 19 42 42 H 1.08004 * 126.58336 * 359.95795 * 25 24 23 43 43 H 1.08006 * 125.89136 * 180.12810 * 26 25 24 44 44 H 1.08003 * 125.72066 * 179.97438 * 28 27 26 45 45 H 1.08008 * 120.52486 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 1.5001 1.8408 -1.9563 6 8 3.2248 0.7145 -2.1162 7 6 3.2181 3.0352 -1.4425 8 7 3.3580 3.5182 -2.8184 9 6 4.0132 4.6946 -3.0677 10 1 4.4264 5.2664 -2.2500 11 6 4.1454 5.1526 -4.3714 12 7 3.6413 4.4561 -5.3680 13 14 5.0385 6.7577 -4.7114 14 1 6.4371 6.6591 -4.2223 15 1 5.0421 7.0222 -6.1726 16 1 4.3458 7.8679 -4.0096 17 6 2.1389 -1.1672 0.0005 18 8 3.3507 -1.1690 0.0894 19 6 1.4021 -2.4480 -0.1075 20 6 0.1715 -2.6254 0.5350 21 6 -0.4837 -3.8340 0.4104 22 7 0.0328 -4.8158 -0.3023 23 6 1.1922 -4.6932 -0.9262 24 7 1.6946 -5.7666 -1.6685 25 6 1.0606 -6.9589 -1.9102 26 6 1.8952 -7.6981 -2.6646 27 7 3.0132 -6.9867 -2.8733 28 6 2.9058 -5.8284 -2.2822 29 6 1.9166 -3.5103 -0.8528 30 1 -0.3633 -0.0932 1.0235 31 1 -0.3634 0.9329 -0.4310 32 1 -0.3633 -0.8397 -0.5924 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1384 0.5138 35 1 4.0873 0.5460 -1.7126 36 1 2.6711 3.7709 -0.8529 37 1 4.2063 2.8837 -1.0083 38 1 2.9872 3.0046 -3.5529 39 1 3.7340 4.7760 -6.2790 40 1 -0.2599 -1.8271 1.1207 41 1 -1.4339 -3.9773 0.9034 42 1 0.0794 -7.2480 -1.5636 43 1 1.7005 -8.6942 -3.0338 44 1 3.6540 -5.0496 -2.2804 45 1 2.8630 -3.4140 -1.3643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700957956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:39 Heat of formation + Delta-G solvation = 31.920852 kcal Electronic energy + Delta-G solvation = -29307.458616 eV Core-core repulsion = 25133.767163 eV Total energy + Delta-G solvation = -4173.691453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.44630 -41.84625 -40.45871 -38.69992 -36.66731 -35.93737 -35.32055 -34.00095 -33.20833 -31.54358 -30.72720 -30.37052 -28.10681 -27.47636 -25.65907 -25.28117 -24.28957 -22.85915 -22.41895 -22.01055 -21.02683 -19.58976 -19.24611 -18.29693 -17.82545 -17.44897 -17.43204 -16.89491 -16.76177 -16.57018 -16.33969 -16.20313 -15.71289 -15.36730 -15.03777 -14.97292 -14.87429 -14.75555 -14.60120 -14.38248 -14.20082 -14.05664 -13.70117 -13.48268 -12.99355 -12.83024 -12.73747 -12.64778 -12.22378 -12.08321 -11.87865 -11.83028 -11.54475 -11.28734 -11.17854 -11.13636 -10.97459 -10.73678 -9.93361 -9.67175 -9.55260 -9.02737 -7.96063 -5.25995 -0.59361 -0.35359 1.04681 1.24926 1.45819 1.49561 1.55582 1.58237 1.87673 2.01138 2.54596 2.59220 3.02714 3.21072 3.35505 3.46298 3.49505 3.59761 3.73709 3.75071 3.76641 4.01098 4.09658 4.20290 4.23150 4.30753 4.43408 4.45335 4.47618 4.51605 4.59773 4.64690 4.75487 4.82676 4.90746 4.92259 5.01756 5.22164 5.25256 5.36720 5.46417 5.62128 5.98152 6.19761 6.24620 6.55716 6.75658 6.87351 6.93772 7.31148 8.07663 8.29588 9.27153 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.002201 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.915390 B =12720.582349 C =14058.033302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.594 5.594 3 C 0.094 3.906 4 C 0.094 3.906 5 H 0.092 0.908 6 O -0.569 6.569 7 C 0.123 3.877 8 N -0.742 5.742 9 C -0.248 4.248 10 H 0.079 0.921 11 C -0.078 4.078 12 N -0.971 5.971 13 Si 0.977 3.023 14 H -0.279 1.279 15 H -0.297 1.297 16 H -0.273 1.273 17 C 0.559 3.441 18 O -0.561 6.561 19 C -0.062 4.062 20 C -0.141 4.141 21 C 0.139 3.861 22 N -0.498 5.498 23 C 0.329 3.671 24 N -0.416 5.416 25 C -0.029 4.029 26 C -0.043 4.043 27 N -0.510 5.510 28 C 0.185 3.815 29 C -0.140 4.140 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.376 0.624 36 H 0.044 0.956 37 H 0.022 0.978 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.193 0.807 41 H 0.219 0.781 42 H 0.202 0.798 43 H 0.199 0.801 44 H 0.226 0.774 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.853 -19.009 18.314 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.325 5.325 3 C -0.029 4.029 4 C 0.034 3.966 5 H 0.110 0.890 6 O -0.375 6.375 7 C -0.004 4.004 8 N -0.385 5.385 9 C -0.380 4.380 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.805 3.195 14 H -0.205 1.205 15 H -0.223 1.223 16 H -0.199 1.199 17 C 0.347 3.653 18 O -0.440 6.440 19 C -0.074 4.074 20 C -0.161 4.161 21 C -0.019 4.019 22 N -0.211 5.211 23 C 0.102 3.898 24 N -0.098 5.098 25 C -0.158 4.158 26 C -0.187 4.187 27 N -0.228 5.228 28 C -0.096 4.096 29 C -0.163 4.163 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.102 0.898 35 H 0.224 0.776 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.205 0.795 39 H 0.060 0.940 40 H 0.209 0.791 41 H 0.235 0.765 42 H 0.219 0.781 43 H 0.216 0.784 44 H 0.242 0.758 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.472 -19.876 17.542 30.202 hybrid contribution 1.016 1.718 -0.257 2.012 sum -13.456 -18.158 17.285 28.452 Atomic orbital electron populations 1.22596 0.76773 1.05052 1.04148 1.47622 1.08655 1.04691 1.71501 1.22175 0.99354 0.85425 0.95937 1.22462 0.94502 0.86363 0.93315 0.89041 1.86525 1.33487 1.59427 1.58025 1.21453 0.97568 0.94542 0.86840 1.42468 1.67801 1.24738 1.03452 1.19635 1.27340 0.98533 0.92477 0.90358 1.25644 1.03066 1.02733 0.95613 1.69841 1.52267 1.41261 0.98747 0.85168 0.78545 0.79519 0.76256 1.20486 1.22299 1.19905 1.18344 0.86638 0.84067 0.76293 1.90769 1.15034 1.87464 1.50705 1.20126 0.96004 0.93335 0.97916 1.23146 0.92635 1.01049 0.99280 1.23388 1.00213 0.86201 0.92084 1.66933 1.10123 1.34875 1.09119 1.18014 0.91845 0.85966 0.93960 1.43242 1.15531 1.12495 1.38531 1.23288 1.02085 0.85568 1.04848 1.22894 0.90601 1.02203 1.03005 1.70348 1.25873 1.04194 1.22345 1.25776 0.88112 0.98733 0.96968 1.21572 1.01725 0.91515 1.01519 0.88012 0.89457 0.90143 0.85691 0.89800 0.77579 0.93806 0.96033 0.79497 0.94042 0.79056 0.76475 0.78097 0.78422 0.75768 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 8.87 127.77 1.13 1.60 16 2 N -0.59 -10.58 2.83 -849.83 -2.40 -12.98 16 3 C 0.09 1.95 5.15 86.38 0.44 2.39 16 4 C 0.09 2.83 3.27 30.59 0.10 2.93 16 5 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 6 O -0.57 -20.46 12.20 -147.07 -1.79 -22.25 16 7 C 0.12 4.62 5.90 86.38 0.51 5.12 16 8 N -0.74 -38.00 5.55 -343.46 -1.91 -39.90 16 9 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 10 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 11 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 12 N -0.97 -60.85 13.06 21.65 0.28 -60.56 16 13 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 17 C 0.56 12.62 6.85 86.88 0.59 13.22 16 18 O -0.56 -17.06 15.62 -1.84 -0.03 -17.09 16 19 C -0.06 -1.10 5.29 -19.90 -0.11 -1.20 16 20 C -0.14 -1.23 7.67 22.64 0.17 -1.06 16 21 C 0.14 1.15 11.17 84.64 0.95 2.09 16 22 N -0.50 -7.87 9.87 -192.95 -1.90 -9.77 16 23 C 0.33 6.46 7.50 132.77 1.00 7.46 16 24 N -0.42 -8.79 2.98 -355.91 -1.06 -9.85 16 25 C -0.03 -0.54 11.17 83.03 0.93 0.39 16 26 C -0.04 -0.86 11.85 83.51 0.99 0.13 16 27 N -0.51 -12.88 11.24 -199.68 -2.24 -15.13 16 28 C 0.19 4.17 11.89 179.99 2.14 6.32 16 29 C -0.14 -2.85 9.14 22.76 0.21 -2.64 16 30 H 0.10 0.12 6.88 -2.39 -0.02 0.11 16 31 H 0.09 0.71 8.03 -2.39 -0.02 0.69 16 32 H 0.08 0.64 5.83 -2.39 -0.01 0.62 16 33 H 0.13 1.76 8.07 -2.39 -0.02 1.74 16 34 H 0.08 1.93 7.36 -2.39 -0.02 1.91 16 35 H 0.38 12.87 8.61 -74.06 -0.64 12.23 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.37 21.03 7.67 -92.72 -0.71 20.32 16 39 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.19 0.25 5.27 -2.91 -0.02 0.23 16 41 H 0.22 -0.19 8.06 -2.91 -0.02 -0.22 16 42 H 0.20 2.73 8.06 -2.91 -0.02 2.70 16 43 H 0.20 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.23 4.04 7.07 -2.91 -0.02 4.02 16 45 H 0.14 3.07 6.78 -2.91 -0.02 3.05 16 Total: -1.00 -83.95 381.73 1.04 -82.91 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -0.29 Total: 36.65 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 10.36 Total: 19.55 kcal Atomic # 7 Polarization: -138.97 SS G_CDS: -9.24 Total: -148.20 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.82 Total: -39.34 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -83.95 1.04 -82.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700957956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.834 kcal (2) G-P(sol) polarization free energy of solvation -83.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds