Wall clock time and date at job start Wed Apr 1 2020 04:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 119.99956 * 2 1 4 4 O 1.21681 * 120.00258 * 184.79631 * 3 2 1 5 5 C 1.46789 * 119.99816 * 4.79616 * 3 2 1 6 6 C 1.36409 * 125.85146 * 185.19788 * 5 3 2 7 7 C 1.41273 * 107.03849 * 180.02562 * 6 5 3 8 8 C 1.43198 * 126.45564 * 179.97438 * 7 6 5 9 9 N 7.17994 * 87.10234 * 1.08605 * 2 1 3 10 10 C 1.38185 * 107.08930 * 0.25819 * 7 6 5 11 11 N 1.34427 * 108.38222 * 359.57239 * 10 7 6 12 12 H 0.97006 * 125.40264 * 180.13152 * 11 10 7 13 13 C 1.46495 * 120.00258 * 179.97438 * 2 1 3 14 14 C 1.53780 * 113.61322 * 30.20770 * 13 2 1 15 15 C 1.54048 * 86.98498 * 270.83557 * 14 13 2 16 16 N 1.46899 * 113.69683 * 220.00956 * 15 14 13 17 17 C 1.46905 * 110.99925 * 252.53395 * 16 15 14 18 18 C 1.50697 * 109.46992 * 179.97438 * 17 16 15 19 19 O 1.21300 * 120.00116 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00334 * 179.97438 * 18 17 16 21 21 C 1.37090 * 120.00237 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00563 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00068 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99656 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00115 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46657 * 90.00543 * 25 23 21 27 27 H 1.48504 * 109.46758 * 210.00146 * 25 23 21 28 28 H 1.48497 * 109.46971 * 330.00458 * 25 23 21 29 29 C 1.53774 * 87.07970 * 334.56815 * 15 14 13 30 30 H 1.09002 * 109.46838 * 53.73439 * 1 2 3 31 31 H 1.09004 * 109.46532 * 173.72570 * 1 2 3 32 32 H 1.09004 * 109.47330 * 293.72931 * 1 2 3 33 33 H 1.08001 * 126.48182 * 359.97438 * 6 5 3 34 34 H 1.08003 * 125.80837 * 179.71065 * 10 7 6 35 35 H 1.09005 * 112.85139 * 161.40109 * 13 2 1 36 36 H 1.08997 * 113.61469 * 25.43092 * 14 13 2 37 37 H 1.08997 * 113.61605 * 156.33194 * 14 13 2 38 38 H 1.08998 * 113.61358 * 89.11487 * 15 14 13 39 39 H 1.00904 * 110.99803 * 128.58347 * 16 15 14 40 40 H 1.08993 * 109.47056 * 299.99814 * 17 16 15 41 41 H 1.08997 * 109.46833 * 60.00152 * 17 16 15 42 42 H 0.97006 * 119.99623 * 0.02562 * 20 18 17 43 43 H 0.97001 * 119.99924 * 180.02562 * 24 23 21 44 44 H 1.08999 * 113.61793 * 270.87883 * 29 15 14 45 45 H 1.09006 * 113.62022 * 139.97290 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3525 1.1692 -0.0881 5 6 1.4088 2.4362 0.1063 6 6 1.9560 3.6826 0.0183 7 6 0.9017 4.6097 0.1758 8 6 1.0135 6.0371 0.1541 9 7 1.1021 7.1695 0.1359 10 6 -0.2567 3.8795 0.3612 11 7 0.0536 2.5725 0.3125 12 1 -0.5761 1.8413 0.4117 13 6 2.1975 -1.2687 0.0006 14 6 1.4510 -2.4113 -0.7079 15 6 0.8031 -2.7236 0.6544 16 7 0.6811 -4.1604 0.9346 17 6 -0.7172 -4.5994 0.8345 18 6 -0.8026 -6.0752 1.1271 19 8 0.2026 -6.7001 1.3925 20 7 -1.9959 -6.7010 1.0939 21 6 -2.0734 -8.0437 1.3596 22 1 -1.1784 -8.6001 1.5959 23 6 -3.3036 -8.6889 1.3248 24 7 -4.3926 -8.0120 1.0368 25 14 -3.4094 -10.5183 1.6876 26 1 -3.6229 -10.7227 3.1429 27 1 -4.5446 -11.1076 0.9331 28 1 -2.1448 -11.1786 1.2751 29 6 2.0367 -2.0724 1.3017 30 1 -0.3633 0.6079 -0.8286 31 1 -0.3632 -1.0216 -0.1123 32 1 -0.3634 0.4136 0.9408 33 1 2.9983 3.9165 -0.1408 34 1 -1.2439 4.2893 0.5164 35 1 3.2337 -1.1593 -0.3199 36 1 0.7423 -2.0685 -1.4617 37 1 2.1070 -3.2024 -1.0709 38 1 -0.1231 -2.1774 0.8328 39 1 1.0672 -4.3865 1.8391 40 1 -1.3230 -4.0501 1.5551 41 1 -1.0871 -4.4071 -0.1726 42 1 -2.7997 -6.2014 0.8813 43 1 -5.2514 -8.4623 1.0129 44 1 2.8525 -2.7710 1.4872 45 1 1.8005 -1.4560 2.1692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701020161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:46 Heat of formation + Delta-G solvation = 62.681553 kcal Electronic energy + Delta-G solvation = -28506.471070 eV Core-core repulsion = 24334.113501 eV Total energy + Delta-G solvation = -4172.357569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.32755 -40.61780 -38.73119 -38.07053 -36.77838 -35.42497 -34.09428 -33.19506 -31.94490 -31.26577 -30.14338 -28.29190 -26.98617 -25.84226 -24.78438 -23.84318 -23.33879 -21.95181 -20.98491 -19.89544 -19.24898 -18.65685 -17.94626 -17.36129 -16.74433 -16.31082 -16.24207 -16.08435 -15.36451 -15.25042 -14.97288 -14.66842 -14.44182 -14.38070 -14.04160 -13.83556 -13.76101 -13.57967 -13.53512 -13.36182 -13.21518 -13.01029 -12.46095 -12.40731 -12.30202 -12.16770 -11.96047 -11.62327 -11.41166 -11.10152 -10.88555 -10.62270 -10.44161 -10.41590 -10.27221 -9.71015 -9.57218 -9.21399 -8.92467 -8.53524 -8.17802 -8.02818 -6.48259 -3.89062 0.84664 1.26400 2.16979 2.44492 2.44762 2.76455 3.13209 3.22518 3.24981 3.28421 3.65290 3.83113 3.98496 4.03649 4.23206 4.26206 4.28837 4.31377 4.34249 4.50733 4.62711 4.68547 4.72382 4.94847 5.03412 5.10918 5.18933 5.28764 5.34270 5.55325 5.56723 5.59854 5.68434 5.73235 5.82988 5.86719 5.93420 6.03452 6.15918 6.28987 6.53593 6.81712 7.14485 7.25813 7.49266 7.53492 7.62541 7.99677 8.54210 9.11584 9.47132 9.98387 10.69372 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.001652 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.110755 B =16944.801798 C =17894.044623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.595 5.595 3 C 0.592 3.408 4 O -0.519 6.519 5 C -0.047 4.047 6 C -0.055 4.055 7 C -0.134 4.134 8 C 0.289 3.711 9 N -0.434 5.434 10 C 0.092 3.908 11 N -0.530 5.530 12 H 0.429 0.571 13 C 0.118 3.882 14 C -0.132 4.132 15 C 0.051 3.949 16 N -0.655 5.655 17 C 0.050 3.950 18 C 0.439 3.561 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 C -0.151 4.151 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.161 0.839 34 H 0.189 0.811 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.352 0.648 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.104 0.896 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 21.843 -2.297 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.328 5.328 3 C 0.381 3.619 4 O -0.394 6.394 5 C -0.158 4.158 6 C -0.082 4.082 7 C -0.145 4.145 8 C -0.026 4.026 9 N -0.111 5.111 10 C -0.053 4.053 11 N -0.132 5.132 12 H 0.277 0.723 13 C 0.014 3.986 14 C -0.171 4.171 15 C -0.060 4.060 16 N -0.287 5.287 17 C -0.083 4.083 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.190 4.190 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.178 0.822 34 H 0.206 0.794 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.173 0.827 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.326 22.659 -2.835 23.448 hybrid contribution -1.704 -0.965 0.938 2.172 sum 3.622 21.694 -1.897 22.076 Atomic orbital electron populations 1.22450 0.80794 1.06302 1.00555 1.47406 1.06172 1.05642 1.73573 1.17020 0.86660 0.81647 0.76604 1.90874 1.12589 1.86321 1.49586 1.20010 0.82920 0.95237 1.17622 1.21070 0.99339 0.88759 0.99077 1.15416 0.94552 0.85212 1.19287 1.24644 0.93735 0.91424 0.92769 1.81291 1.07238 1.11831 1.10702 1.22390 0.99320 0.82708 1.00854 1.43002 1.08554 1.08355 1.53327 0.72300 1.21928 0.97435 0.81520 0.97709 1.23558 0.99942 0.96875 0.96768 1.23454 0.96691 0.88950 0.96874 1.60191 1.17556 1.12538 1.38454 1.21736 0.89507 0.95576 1.01462 1.19807 0.84498 0.88362 0.84914 1.90534 1.35270 1.67108 1.53762 1.41862 1.07276 1.09650 1.61164 1.19712 0.95025 0.84029 1.44229 0.87896 1.25260 0.94793 1.00543 0.97264 1.69606 0.98784 1.37060 1.48869 0.85856 0.78048 0.82017 0.78378 1.20408 1.20896 1.19362 1.23673 0.99214 0.98992 0.97107 0.91136 0.87167 0.92112 0.82178 0.79433 0.86855 0.91147 0.87353 0.90735 0.82695 0.93997 0.89694 0.77516 0.91856 0.87795 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 7.55 59.85 0.45 0.61 16 2 N -0.60 -4.32 3.07 -174.50 -0.54 -4.86 16 3 C 0.59 5.39 7.64 -12.80 -0.10 5.30 16 4 O -0.52 -6.61 16.39 5.21 0.09 -6.53 16 5 C -0.05 -0.32 6.69 -82.41 -0.55 -0.87 16 6 C -0.06 -0.39 10.54 -39.09 -0.41 -0.81 16 7 C -0.13 -0.82 5.97 -106.84 -0.64 -1.45 16 8 C 0.29 2.42 15.83 -22.48 -0.36 2.07 16 9 N -0.43 -4.77 18.54 41.83 0.78 -3.99 16 10 C 0.09 0.29 11.90 -16.43 -0.20 0.09 16 11 N -0.53 -1.78 5.16 -9.27 -0.05 -1.83 16 12 H 0.43 0.45 4.48 -40.82 -0.18 0.27 16 13 C 0.12 1.01 4.40 -67.12 -0.30 0.71 16 14 C -0.13 -1.17 7.09 -25.78 -0.18 -1.35 16 15 C 0.05 0.48 3.48 -66.76 -0.23 0.25 16 16 N -0.65 -9.13 6.19 -106.99 -0.66 -9.79 16 17 C 0.05 0.78 6.01 -4.97 -0.03 0.75 16 18 C 0.44 9.77 7.82 -10.99 -0.09 9.69 16 19 O -0.58 -15.20 15.78 5.54 0.09 -15.11 16 20 N -0.56 -13.61 5.29 -10.96 -0.06 -13.67 16 21 C -0.30 -8.13 9.68 -14.94 -0.14 -8.27 16 22 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -23.70 13.05 55.50 0.72 -22.98 16 25 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 29 C -0.15 -1.32 7.40 -25.92 -0.19 -1.51 16 30 H 0.07 0.16 7.00 -51.93 -0.36 -0.21 16 31 H 0.11 0.46 3.94 -51.93 -0.20 0.26 16 32 H 0.06 0.12 6.49 -51.93 -0.34 -0.22 16 33 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.19 -0.07 8.06 -52.48 -0.42 -0.50 16 35 H 0.11 1.11 7.31 -51.93 -0.38 0.73 16 36 H 0.07 0.56 7.33 -51.93 -0.38 0.17 16 37 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 0.59 5.23 -51.93 -0.27 0.32 16 39 H 0.35 5.21 8.25 -39.29 -0.32 4.89 16 40 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.39 8.97 7.90 -40.82 -0.32 8.65 16 43 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 44 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -35.17 382.06 -7.19 -42.36 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.24 Total: 9.50 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -3.06 Total: 5.70 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.20 Total: -57.11 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.17 Total: -21.64 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.17 -7.19 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701020161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.039 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds