Wall clock time and date at job start Wed Apr 1 2020 04:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 119.99956 * 2 1 4 4 O 1.21681 * 120.00258 * 184.79631 * 3 2 1 5 5 C 1.46789 * 119.99816 * 4.79616 * 3 2 1 6 6 C 1.36409 * 125.85146 * 185.19788 * 5 3 2 7 7 C 1.41273 * 107.03849 * 180.02562 * 6 5 3 8 8 C 1.43198 * 126.45564 * 179.97438 * 7 6 5 9 9 N 7.17994 * 87.10234 * 1.08605 * 2 1 3 10 10 C 1.38185 * 107.08930 * 0.25819 * 7 6 5 11 11 N 1.34427 * 108.38222 * 359.57239 * 10 7 6 12 12 H 0.97006 * 125.40264 * 180.13152 * 11 10 7 13 13 C 1.46495 * 120.00258 * 179.97438 * 2 1 3 14 14 C 1.53780 * 113.61322 * 30.20770 * 13 2 1 15 15 C 1.54048 * 86.98498 * 270.83557 * 14 13 2 16 16 N 1.46899 * 113.69683 * 220.00956 * 15 14 13 17 17 C 1.46905 * 110.99925 * 252.53395 * 16 15 14 18 18 C 1.50697 * 109.46992 * 179.97438 * 17 16 15 19 19 O 1.21300 * 120.00116 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00334 * 179.97438 * 18 17 16 21 21 C 1.37090 * 120.00237 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00563 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00068 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99656 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00115 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46657 * 90.00543 * 25 23 21 27 27 H 1.48504 * 109.46758 * 210.00146 * 25 23 21 28 28 H 1.48497 * 109.46971 * 330.00458 * 25 23 21 29 29 C 1.53774 * 87.07970 * 334.56815 * 15 14 13 30 30 H 1.09002 * 109.46838 * 53.73439 * 1 2 3 31 31 H 1.09004 * 109.46532 * 173.72570 * 1 2 3 32 32 H 1.09004 * 109.47330 * 293.72931 * 1 2 3 33 33 H 1.08001 * 126.48182 * 359.97438 * 6 5 3 34 34 H 1.08003 * 125.80837 * 179.71065 * 10 7 6 35 35 H 1.09005 * 112.85139 * 161.40109 * 13 2 1 36 36 H 1.08997 * 113.61469 * 25.43092 * 14 13 2 37 37 H 1.08997 * 113.61605 * 156.33194 * 14 13 2 38 38 H 1.08998 * 113.61358 * 89.11487 * 15 14 13 39 39 H 1.00904 * 110.99803 * 128.58347 * 16 15 14 40 40 H 1.08993 * 109.47056 * 299.99814 * 17 16 15 41 41 H 1.08997 * 109.46833 * 60.00152 * 17 16 15 42 42 H 0.97006 * 119.99623 * 0.02562 * 20 18 17 43 43 H 0.97001 * 119.99924 * 180.02562 * 24 23 21 44 44 H 1.08999 * 113.61793 * 270.87883 * 29 15 14 45 45 H 1.09006 * 113.62022 * 139.97290 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3525 1.1692 -0.0881 5 6 1.4088 2.4362 0.1063 6 6 1.9560 3.6826 0.0183 7 6 0.9017 4.6097 0.1758 8 6 1.0135 6.0371 0.1541 9 7 1.1021 7.1695 0.1359 10 6 -0.2567 3.8795 0.3612 11 7 0.0536 2.5725 0.3125 12 1 -0.5761 1.8413 0.4117 13 6 2.1975 -1.2687 0.0006 14 6 1.4510 -2.4113 -0.7079 15 6 0.8031 -2.7236 0.6544 16 7 0.6811 -4.1604 0.9346 17 6 -0.7172 -4.5994 0.8345 18 6 -0.8026 -6.0752 1.1271 19 8 0.2026 -6.7001 1.3925 20 7 -1.9959 -6.7010 1.0939 21 6 -2.0734 -8.0437 1.3596 22 1 -1.1784 -8.6001 1.5959 23 6 -3.3036 -8.6889 1.3248 24 7 -4.3926 -8.0120 1.0368 25 14 -3.4094 -10.5183 1.6876 26 1 -3.6229 -10.7227 3.1429 27 1 -4.5446 -11.1076 0.9331 28 1 -2.1448 -11.1786 1.2751 29 6 2.0367 -2.0724 1.3017 30 1 -0.3633 0.6079 -0.8286 31 1 -0.3632 -1.0216 -0.1123 32 1 -0.3634 0.4136 0.9408 33 1 2.9983 3.9165 -0.1408 34 1 -1.2439 4.2893 0.5164 35 1 3.2337 -1.1593 -0.3199 36 1 0.7423 -2.0685 -1.4617 37 1 2.1070 -3.2024 -1.0709 38 1 -0.1231 -2.1774 0.8328 39 1 1.0672 -4.3865 1.8391 40 1 -1.3230 -4.0501 1.5551 41 1 -1.0871 -4.4071 -0.1726 42 1 -2.7997 -6.2014 0.8813 43 1 -5.2514 -8.4623 1.0129 44 1 2.8525 -2.7710 1.4872 45 1 1.8005 -1.4560 2.1692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701020161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:46 Heat of formation + Delta-G solvation = 36.036333 kcal Electronic energy + Delta-G solvation = -28507.626493 eV Core-core repulsion = 24334.113501 eV Total energy + Delta-G solvation = -4173.512992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.78535 -41.27832 -40.07810 -39.23438 -37.45988 -36.33094 -35.82408 -34.24810 -33.20651 -32.43183 -30.63634 -28.88951 -28.22723 -26.68694 -26.06791 -24.85795 -23.83435 -22.63369 -21.45604 -21.12448 -20.38288 -19.86123 -19.24003 -18.05072 -17.64205 -17.17983 -16.89619 -16.82100 -16.66027 -16.36480 -16.16035 -15.60247 -15.58408 -15.37946 -15.00031 -14.80306 -14.47734 -14.35449 -14.23032 -14.08571 -13.96999 -13.81075 -13.56737 -13.50155 -13.22384 -13.01405 -12.93087 -12.90622 -12.82869 -12.40747 -12.31589 -12.11415 -11.67765 -11.48624 -11.35940 -11.14011 -10.29431 -10.18747 -9.98846 -9.80350 -9.36122 -9.25112 -8.45333 -5.93262 0.38763 0.76327 1.39055 1.43604 1.55504 1.62425 1.84413 2.05067 2.08850 2.18350 2.30733 2.67666 2.99615 3.13025 3.22793 3.42796 3.51487 3.64370 3.68006 3.89472 3.95730 4.08160 4.16761 4.20368 4.32230 4.37592 4.51676 4.51934 4.60927 4.64224 4.66940 4.87050 4.88518 4.90929 4.97921 5.03901 5.20262 5.35627 5.42901 5.49045 5.64486 5.95763 6.19765 6.24006 6.31746 6.43249 6.63067 6.65736 6.99598 7.15422 7.59666 8.15600 8.71789 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.001652 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.110755 B =16944.801798 C =17894.044623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.591 5.591 3 C 0.588 3.412 4 O -0.569 6.569 5 C -0.059 4.059 6 C -0.064 4.064 7 C -0.161 4.161 8 C 0.314 3.686 9 N -0.490 5.490 10 C 0.138 3.862 11 N -0.512 5.512 12 H 0.443 0.557 13 C 0.123 3.877 14 C -0.127 4.127 15 C 0.055 3.945 16 N -0.673 5.673 17 C 0.066 3.934 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.918 5.918 25 Si 0.989 3.011 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.275 1.275 29 C -0.146 4.146 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.235 0.765 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.345 0.655 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.092 0.908 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 22.601 -2.190 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.322 5.322 3 C 0.378 3.622 4 O -0.448 6.448 5 C -0.170 4.170 6 C -0.092 4.092 7 C -0.171 4.171 8 C 0.000 4.000 9 N -0.167 5.167 10 C -0.009 4.009 11 N -0.116 5.116 12 H 0.294 0.706 13 C 0.018 3.982 14 C -0.166 4.166 15 C -0.054 4.054 16 N -0.305 5.305 17 C -0.066 4.066 18 C 0.223 3.777 19 O -0.513 6.513 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.210 4.210 24 N -0.559 5.559 25 Si 0.813 3.187 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.200 1.200 29 C -0.185 4.185 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.106 0.894 33 H 0.165 0.835 34 H 0.251 0.749 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.165 0.835 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.415 23.417 -2.738 23.699 hybrid contribution -0.789 -1.188 0.896 1.684 sum 1.626 22.229 -1.842 22.364 Atomic orbital electron populations 1.22769 0.78267 1.07166 1.02990 1.47420 1.07679 1.04468 1.72613 1.17334 0.86252 0.82668 0.75903 1.90848 1.14813 1.87070 1.52097 1.19549 0.84357 0.93760 1.19352 1.21088 0.99371 0.89580 0.99122 1.15435 0.95647 0.83997 1.22048 1.24901 0.92212 0.91673 0.91175 1.81310 1.08913 1.13442 1.13061 1.23035 0.99879 0.81818 0.96157 1.42953 1.07319 1.09056 1.52234 0.70574 1.21724 0.96866 0.82172 0.97457 1.23472 0.99871 0.96340 0.96943 1.23613 0.98100 0.86642 0.97080 1.60179 1.16553 1.15569 1.38240 1.21606 0.91172 0.90505 1.03323 1.21036 0.83092 0.91065 0.82548 1.90505 1.36621 1.69043 1.55113 1.41921 1.08247 1.08960 1.61892 1.19642 0.94700 0.85706 1.46373 0.90548 1.25959 0.94162 1.04283 0.96587 1.69653 0.99086 1.38415 1.48751 0.84984 0.77905 0.77287 0.78518 1.19685 1.19586 1.20005 1.23603 0.98662 0.98748 0.97459 0.88955 0.87039 0.89442 0.83480 0.74902 0.88867 0.89535 0.89117 0.87793 0.83530 0.91007 0.87579 0.76859 0.91331 0.88939 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 7.55 127.77 0.96 1.06 16 2 N -0.59 -7.34 3.07 -824.20 -2.53 -9.88 16 3 C 0.59 10.20 7.64 86.48 0.66 10.86 16 4 O -0.57 -15.08 16.39 -4.29 -0.07 -15.15 16 5 C -0.06 -0.68 6.69 40.02 0.27 -0.42 16 6 C -0.06 -0.86 10.54 22.59 0.24 -0.62 16 7 C -0.16 -1.62 5.97 -21.30 -0.13 -1.75 16 8 C 0.31 4.97 15.83 88.33 1.40 6.37 16 9 N -0.49 -10.73 18.54 19.00 0.35 -10.38 16 10 C 0.14 0.22 11.90 84.28 1.00 1.23 16 11 N -0.51 -1.24 5.16 -183.25 -0.95 -2.19 16 12 H 0.44 -1.47 4.48 -92.70 -0.42 -1.89 16 13 C 0.12 1.98 4.40 45.52 0.20 2.19 16 14 C -0.13 -2.05 7.09 31.21 0.22 -1.83 16 15 C 0.05 0.91 3.48 45.53 0.16 1.07 16 16 N -0.67 -17.74 6.19 -492.40 -3.05 -20.78 16 17 C 0.07 1.91 6.01 85.56 0.51 2.42 16 18 C 0.43 19.26 7.82 87.66 0.69 19.94 16 19 O -0.63 -33.30 15.78 -3.09 -0.05 -33.35 16 20 N -0.57 -27.69 5.29 -306.98 -1.62 -29.32 16 21 C -0.33 -18.36 9.68 84.04 0.81 -17.55 16 22 H 0.08 4.52 7.16 -2.91 -0.02 4.50 16 23 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 24 N -0.92 -47.41 13.05 21.66 0.28 -47.13 16 25 Si 0.99 41.60 29.55 68.60 2.03 43.63 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 28 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 29 C -0.15 -2.38 7.40 31.12 0.23 -2.15 16 30 H 0.09 -0.04 7.00 -2.39 -0.02 -0.06 16 31 H 0.11 0.40 3.94 -2.38 -0.01 0.39 16 32 H 0.09 -0.14 6.49 -2.38 -0.02 -0.16 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.23 -1.72 8.06 -2.91 -0.02 -1.74 16 35 H 0.09 1.92 7.31 -2.38 -0.02 1.90 16 36 H 0.09 1.12 7.33 -2.39 -0.02 1.10 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.10 1.16 5.23 -2.39 -0.01 1.15 16 39 H 0.35 9.98 8.25 -89.69 -0.74 9.24 16 40 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 41 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.40 17.93 7.90 -92.70 -0.73 17.20 16 43 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 44 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -81.08 382.06 1.30 -79.78 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.79 Total: 23.99 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 7.70 Total: 20.77 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -7.51 Total: -119.67 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -0.12 Total: -48.50 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -81.08 1.30 -79.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701020161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.821 kcal (2) G-P(sol) polarization free energy of solvation -81.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds