Wall clock time and date at job start Wed Apr 1 2020 03:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47160 * 2 1 4 4 C 1.36937 * 120.00058 * 275.31458 * 3 2 1 5 5 H 1.07999 * 120.00062 * 37.57651 * 4 3 2 6 6 C 1.38821 * 119.99867 * 217.57924 * 4 3 2 7 7 N 1.31622 * 119.99754 * 21.41828 * 6 4 3 8 8 Si 1.86797 * 120.00086 * 201.42413 * 6 4 3 9 9 H 1.48501 * 109.47223 * 59.99646 * 8 6 4 10 10 H 1.48502 * 109.47214 * 179.97438 * 8 6 4 11 11 H 1.48510 * 109.46937 * 299.99914 * 8 6 4 12 12 C 1.46505 * 119.99952 * 95.30700 * 3 2 1 13 13 C 1.52998 * 109.47392 * 270.00083 * 12 3 2 14 14 C 1.52995 * 109.46790 * 179.97438 * 13 12 3 15 15 N 1.46504 * 109.47179 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00487 * 180.02562 * 15 14 13 17 17 O 1.21560 * 119.99857 * 359.97438 * 16 15 14 18 18 C 1.47776 * 120.00238 * 179.97438 * 16 15 14 19 19 C 1.40609 * 119.79217 * 359.97438 * 18 16 15 20 20 C 1.35911 * 120.89909 * 179.97438 * 19 18 16 21 21 F 1.35093 * 119.97293 * 180.02562 * 20 19 18 22 22 C 1.40969 * 120.05506 * 0.02562 * 20 19 18 23 23 N 1.33632 * 120.83354 * 180.02562 * 22 20 19 24 24 C 1.31105 * 121.39378 * 180.02562 * 23 22 20 25 25 C 1.39322 * 121.76356 * 359.97438 * 24 23 22 26 26 C 1.36572 * 119.90567 * 0.28042 * 25 24 23 27 27 C 1.40901 * 118.15006 * 359.46262 * 26 25 24 28 28 C 1.38528 * 119.79277 * 179.97438 * 18 16 15 29 29 H 1.09000 * 109.46905 * 300.00128 * 1 2 3 30 30 H 1.09000 * 109.47486 * 59.99263 * 1 2 3 31 31 H 1.08997 * 109.47271 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46966 * 240.00416 * 2 1 3 33 33 H 1.08999 * 109.47490 * 119.99949 * 2 1 3 34 34 H 0.97000 * 119.99942 * 180.02562 * 7 6 4 35 35 H 1.09006 * 109.46778 * 149.99990 * 12 3 2 36 36 H 1.09000 * 109.47013 * 30.00837 * 12 3 2 37 37 H 1.08999 * 109.46617 * 59.99973 * 13 12 3 38 38 H 1.08997 * 109.47294 * 300.00022 * 13 12 3 39 39 H 1.08999 * 109.47297 * 60.00715 * 14 13 12 40 40 H 1.09000 * 109.47938 * 300.00042 * 14 13 12 41 41 H 0.97002 * 119.99515 * 0.02562 * 15 14 13 42 42 H 1.08010 * 119.54964 * 0.02562 * 19 18 16 43 43 H 1.07995 * 119.11627 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.04895 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.92568 * 179.70408 * 26 25 24 46 46 H 1.08004 * 120.27183 * 359.97438 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2796 -2.6584 9 1 1.9627 5.1786 -2.3343 10 1 4.3618 5.0615 -2.6660 11 1 2.8843 3.6726 -3.9967 12 6 2.3731 2.0327 1.2633 13 6 1.1425 2.7383 1.8366 14 6 1.5130 3.4181 3.1562 15 7 0.3346 4.0932 3.7055 16 6 0.4243 4.7641 4.8710 17 8 1.4830 4.8086 5.4667 18 6 -0.7643 5.4455 5.4247 19 6 -1.9866 5.3917 4.7318 20 6 -3.0939 6.0098 5.2207 21 9 -4.2588 5.9455 4.5397 22 6 -3.0278 6.7179 6.4378 23 7 -4.1070 7.3309 6.9331 24 6 -4.0578 7.9928 8.0637 25 6 -2.8826 8.0911 8.8055 26 6 -1.7408 7.4926 8.3547 27 6 -1.7993 6.7774 7.1421 28 6 -0.6673 6.1334 6.6232 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.0488 3.4032 -0.7829 35 1 3.1616 2.7641 1.0860 36 1 2.7255 1.2833 1.9721 37 1 0.3541 2.0068 2.0139 38 1 0.7902 3.4876 1.1278 39 1 2.3016 4.1495 2.9793 40 1 1.8651 2.6685 3.8649 41 1 -0.5103 4.0573 3.2303 42 1 -2.0465 4.8510 3.7987 43 1 -4.9524 8.4741 8.4302 44 1 -2.8735 8.6432 9.7337 45 1 -0.8195 7.5623 8.9141 46 1 0.2726 6.1729 7.1538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707465304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:04 Heat of formation + Delta-G solvation = -11.099111 kcal Electronic energy + Delta-G solvation = -28796.057495 eV Core-core repulsion = 24600.580595 eV Total energy + Delta-G solvation = -4195.476900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -49.18049 -41.28224 -39.76642 -37.09731 -36.43547 -34.94407 -33.80115 -31.93858 -31.84442 -30.75306 -30.20459 -28.54003 -26.00465 -24.70305 -24.59616 -23.50957 -22.46768 -21.19717 -21.10616 -20.13701 -18.84194 -18.39363 -17.74113 -16.73026 -16.64698 -16.16539 -16.09094 -15.58121 -15.45218 -15.29656 -14.88294 -14.60124 -14.40176 -14.11249 -14.07787 -13.69806 -13.52016 -13.42028 -13.19625 -12.69840 -12.60478 -12.36857 -12.09433 -11.97841 -11.60790 -11.45166 -11.18417 -11.03927 -10.94422 -10.74536 -10.61786 -10.49099 -10.14959 -10.08810 -9.96438 -9.67478 -9.55997 -9.43910 -8.96974 -8.58979 -8.47784 -6.57443 -5.79609 -3.38729 -0.28995 0.06736 1.34556 1.94564 3.05417 3.08297 3.35639 3.42218 3.43631 3.46230 3.56094 3.74884 4.10404 4.21863 4.31956 4.40011 4.46799 4.58928 4.70374 4.84906 5.02850 5.22395 5.27278 5.36183 5.39349 5.44048 5.59966 5.61247 5.72434 5.84162 5.92347 5.95613 6.05920 6.21492 6.23860 6.33538 6.40065 6.42368 6.56371 6.70886 6.73769 6.90658 7.07251 7.16395 7.29916 7.48960 7.65857 7.81508 8.13302 8.51646 9.18896 9.81138 10.40049 11.19961 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015058 B = 0.002129 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.995884 B =13151.465228 C =13315.981329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.148 4.148 14 C 0.120 3.880 15 N -0.716 5.716 16 C 0.554 3.446 17 O -0.534 6.534 18 C -0.103 4.103 19 C -0.116 4.116 20 C 0.125 3.875 21 F -0.118 7.118 22 C 0.111 3.889 23 N -0.468 5.468 24 C 0.140 3.860 25 C -0.171 4.171 26 C -0.046 4.046 27 C -0.090 4.090 28 C -0.037 4.037 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.256 0.744 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.399 0.601 42 H 0.148 0.852 43 H 0.165 0.835 44 H 0.144 0.856 45 H 0.149 0.851 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.504 8.791 19.524 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.189 4.189 14 C -0.003 4.003 15 N -0.367 5.367 16 C 0.340 3.660 17 O -0.412 6.412 18 C -0.107 4.107 19 C -0.137 4.137 20 C 0.105 3.895 21 F -0.097 7.097 22 C -0.012 4.012 23 N -0.176 5.176 24 C -0.033 4.033 25 C -0.190 4.190 26 C -0.072 4.072 27 C -0.092 4.092 28 C -0.056 4.056 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.234 0.766 42 H 0.166 0.834 43 H 0.182 0.818 44 H 0.162 0.838 45 H 0.167 0.833 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.321 8.737 19.295 25.568 hybrid contribution -0.062 0.837 -0.576 1.019 sum -14.384 9.574 18.719 25.474 Atomic orbital electron populations 1.22369 1.00167 0.98906 1.01103 1.20849 0.91662 0.87387 0.98735 1.43734 1.76052 1.08176 1.02470 1.18938 1.04657 1.21292 0.94178 0.92372 1.25193 0.94207 1.01294 0.98074 1.69989 1.03162 1.37294 1.42392 0.86491 0.76924 0.82381 0.81692 1.20917 1.21608 1.20717 1.20793 0.94357 0.96667 0.85798 1.22569 1.02550 0.99965 0.93800 1.21572 0.86728 0.96242 0.95788 1.46144 1.14898 1.52945 1.22686 1.18019 0.87511 0.79097 0.81380 1.90795 1.29253 1.61329 1.59865 1.19797 0.93401 1.01126 0.96338 1.20968 0.91044 1.00269 1.01390 1.16858 0.82547 0.99729 0.90383 1.91555 1.45667 1.94341 1.78097 1.18892 0.90093 0.97680 0.94517 1.68054 1.28542 1.07883 1.13093 1.23096 0.98007 0.92910 0.89260 1.21999 0.93716 1.01366 1.01958 1.21588 0.99517 0.92828 0.93274 1.18594 0.93702 1.00346 0.96572 1.21497 0.97991 0.92373 0.93785 0.93826 0.93257 0.94624 0.93881 0.94829 0.93443 0.88707 0.95615 0.92959 0.91600 0.91112 0.91601 0.76593 0.83397 0.81773 0.83804 0.83340 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.21 37.16 0.38 -2.54 16 2 C 0.14 2.89 6.44 -4.04 -0.03 2.87 16 3 N -0.58 -13.98 2.43 -173.23 -0.42 -14.40 16 4 C -0.26 -6.91 9.45 -15.06 -0.14 -7.06 16 5 H 0.06 1.55 7.92 -52.49 -0.42 1.13 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -25.01 11.47 55.49 0.64 -24.37 16 8 Si 0.90 21.21 29.60 -169.99 -5.03 16.18 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.15 3.34 5.33 -4.04 -0.02 3.31 16 13 C -0.15 -2.65 5.65 -26.73 -0.15 -2.80 16 14 C 0.12 1.92 5.67 -4.04 -0.02 1.89 16 15 N -0.72 -9.66 5.50 -61.27 -0.34 -10.00 16 16 C 0.55 7.79 7.77 -12.36 -0.10 7.69 16 17 O -0.53 -9.21 16.30 5.31 0.09 -9.12 16 18 C -0.10 -1.18 5.87 -105.00 -0.62 -1.79 16 19 C -0.12 -1.20 9.41 -39.52 -0.37 -1.57 16 20 C 0.13 1.43 7.29 -39.38 -0.29 1.15 16 21 F -0.12 -1.47 17.10 2.25 0.04 -1.43 16 22 C 0.11 1.24 6.61 -84.72 -0.56 0.68 16 23 N -0.47 -5.05 10.19 -10.88 -0.11 -5.16 16 24 C 0.14 0.98 11.15 -17.46 -0.19 0.78 16 25 C -0.17 -0.90 10.03 -39.78 -0.40 -1.30 16 26 C -0.05 -0.30 9.89 -39.18 -0.39 -0.69 16 27 C -0.09 -0.85 5.74 -106.82 -0.61 -1.46 16 28 C -0.04 -0.37 9.34 -38.74 -0.36 -0.73 16 29 H 0.04 0.74 6.64 -51.93 -0.34 0.39 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.10 2.40 5.52 -51.93 -0.29 2.12 16 36 H 0.03 0.54 7.86 -51.93 -0.41 0.13 16 37 H 0.05 0.87 6.64 -51.93 -0.34 0.53 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.40 4.43 6.46 -40.82 -0.26 4.17 16 42 H 0.15 1.26 6.35 -52.48 -0.33 0.93 16 43 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 45 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 46 H 0.15 1.40 7.61 -52.48 -0.40 1.00 16 LS Contribution 388.84 15.07 5.86 5.86 Total: -1.00 -32.44 388.84 -9.38 -41.81 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.14 Total: 1.93 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.96 Total: -1.30 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.23 Total: -53.92 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.44 -9.38 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707465304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.716 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds