Wall clock time and date at job start Wed Apr 1 2020 03:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47160 * 2 1 4 4 C 1.36937 * 120.00058 * 275.31458 * 3 2 1 5 5 H 1.07999 * 120.00062 * 37.57651 * 4 3 2 6 6 C 1.38821 * 119.99867 * 217.57924 * 4 3 2 7 7 N 1.31622 * 119.99754 * 21.41828 * 6 4 3 8 8 Si 1.86797 * 120.00086 * 201.42413 * 6 4 3 9 9 H 1.48501 * 109.47223 * 59.99646 * 8 6 4 10 10 H 1.48502 * 109.47214 * 179.97438 * 8 6 4 11 11 H 1.48510 * 109.46937 * 299.99914 * 8 6 4 12 12 C 1.46505 * 119.99952 * 95.30700 * 3 2 1 13 13 C 1.52998 * 109.47392 * 270.00083 * 12 3 2 14 14 C 1.52995 * 109.46790 * 179.97438 * 13 12 3 15 15 N 1.46504 * 109.47179 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00487 * 180.02562 * 15 14 13 17 17 O 1.21560 * 119.99857 * 359.97438 * 16 15 14 18 18 C 1.47776 * 120.00238 * 179.97438 * 16 15 14 19 19 C 1.40609 * 119.79217 * 359.97438 * 18 16 15 20 20 C 1.35911 * 120.89909 * 179.97438 * 19 18 16 21 21 F 1.35093 * 119.97293 * 180.02562 * 20 19 18 22 22 C 1.40969 * 120.05506 * 0.02562 * 20 19 18 23 23 N 1.33632 * 120.83354 * 180.02562 * 22 20 19 24 24 C 1.31105 * 121.39378 * 180.02562 * 23 22 20 25 25 C 1.39322 * 121.76356 * 359.97438 * 24 23 22 26 26 C 1.36572 * 119.90567 * 0.28042 * 25 24 23 27 27 C 1.40901 * 118.15006 * 359.46262 * 26 25 24 28 28 C 1.38528 * 119.79277 * 179.97438 * 18 16 15 29 29 H 1.09000 * 109.46905 * 300.00128 * 1 2 3 30 30 H 1.09000 * 109.47486 * 59.99263 * 1 2 3 31 31 H 1.08997 * 109.47271 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46966 * 240.00416 * 2 1 3 33 33 H 1.08999 * 109.47490 * 119.99949 * 2 1 3 34 34 H 0.97000 * 119.99942 * 180.02562 * 7 6 4 35 35 H 1.09006 * 109.46778 * 149.99990 * 12 3 2 36 36 H 1.09000 * 109.47013 * 30.00837 * 12 3 2 37 37 H 1.08999 * 109.46617 * 59.99973 * 13 12 3 38 38 H 1.08997 * 109.47294 * 300.00022 * 13 12 3 39 39 H 1.08999 * 109.47297 * 60.00715 * 14 13 12 40 40 H 1.09000 * 109.47938 * 300.00042 * 14 13 12 41 41 H 0.97002 * 119.99515 * 0.02562 * 15 14 13 42 42 H 1.08010 * 119.54964 * 0.02562 * 19 18 16 43 43 H 1.07995 * 119.11627 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.04895 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.92568 * 179.70408 * 26 25 24 46 46 H 1.08004 * 120.27183 * 359.97438 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2796 -2.6584 9 1 1.9627 5.1786 -2.3343 10 1 4.3618 5.0615 -2.6660 11 1 2.8843 3.6726 -3.9967 12 6 2.3731 2.0327 1.2633 13 6 1.1425 2.7383 1.8366 14 6 1.5130 3.4181 3.1562 15 7 0.3346 4.0932 3.7055 16 6 0.4243 4.7641 4.8710 17 8 1.4830 4.8086 5.4667 18 6 -0.7643 5.4455 5.4247 19 6 -1.9866 5.3917 4.7318 20 6 -3.0939 6.0098 5.2207 21 9 -4.2588 5.9455 4.5397 22 6 -3.0278 6.7179 6.4378 23 7 -4.1070 7.3309 6.9331 24 6 -4.0578 7.9928 8.0637 25 6 -2.8826 8.0911 8.8055 26 6 -1.7408 7.4926 8.3547 27 6 -1.7993 6.7774 7.1421 28 6 -0.6673 6.1334 6.6232 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.0488 3.4032 -0.7829 35 1 3.1616 2.7641 1.0860 36 1 2.7255 1.2833 1.9721 37 1 0.3541 2.0068 2.0139 38 1 0.7902 3.4876 1.1278 39 1 2.3016 4.1495 2.9793 40 1 1.8651 2.6685 3.8649 41 1 -0.5103 4.0573 3.2303 42 1 -2.0465 4.8510 3.7987 43 1 -4.9524 8.4741 8.4302 44 1 -2.8735 8.6432 9.7337 45 1 -0.8195 7.5623 8.9141 46 1 0.2726 6.1729 7.1538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707465304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:03 Heat of formation + Delta-G solvation = -30.231125 kcal Electronic energy + Delta-G solvation = -28796.887121 eV Core-core repulsion = 24600.580595 eV Total energy + Delta-G solvation = -4196.306526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.03851 -41.99317 -40.80009 -38.25132 -37.77685 -36.30262 -34.42531 -33.81134 -33.07386 -31.76170 -30.96702 -30.17872 -27.38606 -26.03024 -25.27562 -24.89203 -23.23684 -22.56533 -22.29293 -21.82794 -19.67768 -19.23343 -18.67802 -18.38127 -17.55479 -17.09604 -16.96661 -16.86705 -16.55914 -16.49029 -16.05011 -15.78460 -15.59863 -15.27640 -15.12915 -14.91986 -14.83272 -14.26876 -14.18335 -14.05062 -13.86481 -13.45494 -13.26018 -13.18026 -12.83057 -12.80559 -12.69563 -12.64728 -12.54549 -12.35409 -12.13976 -11.93413 -11.55970 -11.47297 -11.26592 -11.17902 -10.68593 -10.48055 -10.27506 -10.02808 -9.35211 -8.53395 -7.80104 -5.43924 -0.98920 -0.60484 0.69199 1.15054 1.45956 1.48806 1.54740 1.99024 2.15490 2.51566 2.75665 2.85454 3.09384 3.24409 3.37396 3.53555 3.62331 3.66950 3.83007 3.91793 4.06934 4.16803 4.31512 4.33878 4.42502 4.45945 4.53894 4.55154 4.72942 4.75264 4.78524 4.84335 4.89543 4.92718 4.98980 5.04898 5.13550 5.17050 5.30084 5.34310 5.36856 5.47206 5.59839 5.61161 5.70743 5.85928 6.40235 6.49361 6.70923 7.04114 7.20256 7.90131 8.42415 9.14428 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015058 B = 0.002129 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.995884 B =13151.465228 C =13315.981329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 N -0.601 5.601 4 C -0.264 4.264 5 H 0.054 0.946 6 C -0.035 4.035 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.276 1.276 12 C 0.151 3.849 13 C -0.126 4.126 14 C 0.133 3.867 15 N -0.709 5.709 16 C 0.558 3.442 17 O -0.571 6.571 18 C -0.123 4.123 19 C -0.108 4.108 20 C 0.101 3.899 21 F -0.131 7.131 22 C 0.096 3.904 23 N -0.511 5.511 24 C 0.144 3.856 25 C -0.158 4.158 26 C -0.046 4.046 27 C -0.103 4.103 28 C -0.022 4.022 29 H 0.051 0.949 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.028 0.972 33 H 0.046 0.954 34 H 0.251 0.749 35 H 0.061 0.939 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.411 0.589 42 H 0.161 0.839 43 H 0.197 0.803 44 H 0.187 0.813 45 H 0.180 0.820 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.313 9.828 21.666 28.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.394 4.394 5 H 0.072 0.928 6 C -0.233 4.233 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.202 1.202 12 C 0.024 3.976 13 C -0.166 4.166 14 C 0.009 3.991 15 N -0.361 5.361 16 C 0.346 3.654 17 O -0.452 6.452 18 C -0.126 4.126 19 C -0.129 4.129 20 C 0.081 3.919 21 F -0.109 7.109 22 C -0.026 4.026 23 N -0.220 5.220 24 C -0.028 4.028 25 C -0.177 4.177 26 C -0.071 4.071 27 C -0.105 4.105 28 C -0.042 4.042 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.249 0.751 42 H 0.178 0.822 43 H 0.213 0.787 44 H 0.204 0.796 45 H 0.197 0.803 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.183 9.761 21.433 28.575 hybrid contribution 0.431 0.547 -1.071 1.277 sum -15.752 10.308 20.362 27.731 Atomic orbital electron populations 1.22175 0.97340 1.00750 1.00825 1.20994 0.93772 0.85727 0.98641 1.43980 1.76454 1.09535 1.02288 1.19129 1.04068 1.21315 0.94897 0.92843 1.25833 0.94037 1.03289 1.00126 1.70119 1.03722 1.38068 1.44160 0.85580 0.76536 0.79970 0.79805 1.20449 1.22116 1.20158 1.20703 0.95215 0.96168 0.85541 1.22200 1.00836 0.99604 0.93952 1.21226 0.87134 0.95764 0.95013 1.45951 1.14654 1.52674 1.22797 1.18333 0.87799 0.78434 0.80855 1.90769 1.30803 1.62743 1.60857 1.19520 0.92587 1.02980 0.97537 1.20969 0.90414 0.99901 1.01607 1.17057 0.82450 1.01151 0.91218 1.91510 1.46308 1.94620 1.78472 1.19078 0.91039 0.97867 0.94619 1.68083 1.28873 1.09824 1.15215 1.23825 0.99993 0.90994 0.87948 1.22453 0.92297 1.00185 1.02764 1.22026 1.01375 0.91664 0.92073 1.18763 0.92730 1.01168 0.97861 1.21679 0.98564 0.90947 0.92987 0.92998 0.94560 0.91707 0.95330 0.93607 0.93984 0.92142 0.95191 0.91123 0.92984 0.93134 0.91449 0.75099 0.82168 0.78663 0.79617 0.80311 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 10.21 71.98 0.73 -4.30 16 2 C 0.13 5.45 6.44 86.38 0.56 6.00 16 3 N -0.60 -28.92 2.43 -701.99 -1.71 -30.63 16 4 C -0.26 -14.11 9.45 84.04 0.79 -13.32 16 5 H 0.05 2.87 7.92 -2.91 -0.02 2.85 16 6 C -0.04 -1.94 4.95 84.86 0.42 -1.52 16 7 N -0.92 -53.15 11.47 21.65 0.25 -52.90 16 8 Si 0.95 44.25 29.60 68.60 2.03 46.28 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 C 0.15 6.74 5.33 86.38 0.46 7.20 16 13 C -0.13 -4.46 5.65 30.59 0.17 -4.28 16 14 C 0.13 4.28 5.67 86.38 0.49 4.77 16 15 N -0.71 -18.95 5.50 -466.04 -2.57 -21.51 16 16 C 0.56 15.66 7.77 86.77 0.67 16.34 16 17 O -0.57 -19.84 16.30 -3.90 -0.06 -19.91 16 18 C -0.12 -2.77 5.87 -20.11 -0.12 -2.88 16 19 C -0.11 -2.24 9.41 22.31 0.21 -2.03 16 20 C 0.10 2.35 7.29 22.40 0.16 2.51 16 21 F -0.13 -3.34 17.10 44.97 0.77 -2.57 16 22 C 0.10 2.10 6.61 40.40 0.27 2.36 16 23 N -0.51 -10.44 10.19 -188.33 -1.92 -12.36 16 24 C 0.14 1.59 11.15 85.06 0.95 2.54 16 25 C -0.16 -1.02 10.03 22.14 0.22 -0.79 16 26 C -0.05 -0.44 9.89 22.53 0.22 -0.22 16 27 C -0.10 -1.79 5.74 -21.29 -0.12 -1.91 16 28 C -0.02 -0.42 9.34 22.81 0.21 -0.21 16 29 H 0.05 1.63 6.64 -2.39 -0.02 1.61 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 33 H 0.05 1.73 7.83 -2.39 -0.02 1.71 16 34 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.06 3.18 5.52 -2.38 -0.01 3.16 16 36 H 0.03 1.28 7.86 -2.39 -0.02 1.26 16 37 H 0.07 2.25 6.64 -2.39 -0.02 2.23 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.41 8.85 6.46 -92.71 -0.60 8.25 16 42 H 0.16 2.70 6.35 -2.91 -0.02 2.68 16 43 H 0.20 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.19 -0.34 8.06 -2.91 -0.02 -0.37 16 45 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 46 H 0.16 2.75 7.61 -2.91 -0.02 2.73 16 Total: -1.00 -72.71 388.84 3.52 -69.19 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.42 Total: 14.16 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 6.31 Total: 10.25 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -5.95 Total: -117.40 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.06 Total: -19.91 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.77 Total: -2.57 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -72.71 3.52 -69.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707465304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.962 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds