Wall clock time and date at job start Wed Apr 1 2020 03:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 C 1.37357 * 125.83581 * 2 1 4 4 N 1.29403 * 108.83017 * 179.77654 * 3 2 1 5 5 N 1.40163 * 108.13922 * 0.37651 * 4 3 2 6 6 C 1.46505 * 126.34609 * 179.88290 * 5 4 3 7 7 C 1.50703 * 109.47064 * 269.68765 * 6 5 4 8 8 O 1.21278 * 119.99985 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.38233 * 120.00099 * 269.72651 * 11 10 9 13 13 C 1.38239 * 119.99655 * 179.76882 * 12 11 10 14 14 C 1.38230 * 120.00228 * 0.50243 * 13 12 11 15 15 C 1.50695 * 120.00174 * 179.72734 * 14 13 12 16 16 N 1.46499 * 109.47150 * 270.02349 * 15 14 13 17 17 C 1.36939 * 120.00227 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99691 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00211 * 180.02562 * 17 16 15 20 20 N 1.31612 * 119.99831 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00128 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47083 * 59.99365 * 21 19 17 23 23 H 1.48502 * 109.47066 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46513 * 299.99811 * 21 19 17 25 25 C 1.38238 * 119.99995 * 359.75228 * 14 13 12 26 26 C 1.38238 * 120.00072 * 359.97438 * 25 14 13 27 27 C 1.34819 * 125.83160 * 180.02562 * 2 1 3 28 28 O 1.21813 * 126.30419 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.47531 * 269.97830 * 1 2 3 30 30 H 1.08993 * 109.47457 * 29.98127 * 1 2 3 31 31 H 1.09004 * 109.47618 * 149.98321 * 1 2 3 32 32 H 1.07998 * 125.58045 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47068 * 149.68797 * 6 5 4 34 34 H 1.09001 * 109.47372 * 29.68709 * 6 5 4 35 35 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 37 37 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 38 38 H 1.08003 * 119.99927 * 359.97438 * 12 11 10 39 39 H 1.08000 * 119.99431 * 180.23215 * 13 12 11 40 40 H 1.09001 * 109.47176 * 30.01922 * 15 14 13 41 41 H 1.09001 * 109.47298 * 150.02075 * 15 14 13 42 42 H 0.97002 * 120.00308 * 0.02562 * 16 15 14 43 43 H 0.97005 * 120.00467 * 179.97438 * 20 19 17 44 44 H 1.08002 * 119.99952 * 179.97438 * 25 14 13 45 45 H 1.07991 * 120.00062 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7351 0.0048 5 7 3.5343 -0.6662 -0.0007 6 6 4.7312 -1.5110 -0.0004 7 6 5.1415 -1.8013 -1.4211 8 8 4.4978 -1.3470 -2.3431 9 7 6.2238 -2.5659 -1.6672 10 6 6.6230 -2.8477 -3.0483 11 6 7.8542 -3.7167 -3.0480 12 6 9.1092 -3.1373 -3.0536 13 6 10.2385 -3.9345 -3.0485 14 6 10.1128 -5.3111 -3.0483 15 6 11.3439 -6.1802 -3.0489 16 7 11.7424 -6.4615 -4.4303 17 6 12.8425 -7.2374 -4.6811 18 1 13.4161 -7.6423 -3.8605 19 6 13.2204 -7.5035 -5.9901 20 7 12.5210 -7.0105 -6.9901 21 14 14.7206 -8.5626 -6.3323 22 1 14.5235 -9.9078 -5.7351 23 1 14.9094 -8.6943 -7.7993 24 1 15.9220 -7.9268 -5.7342 25 6 8.8578 -5.8906 -3.0480 26 6 7.7284 -5.0934 -3.0474 27 6 2.2541 -1.0930 -0.0005 28 8 1.8804 -2.2524 -0.0006 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.9249 2.1372 0.0004 33 1 4.5150 -2.4474 0.5139 34 1 5.5414 -0.9931 0.5131 35 1 6.7389 -2.9290 -0.9297 36 1 6.8398 -1.9112 -3.5621 37 1 5.8128 -3.3650 -3.5622 38 1 9.2074 -2.0618 -3.0586 39 1 11.2190 -3.4818 -3.0491 40 1 12.1542 -5.6627 -2.5353 41 1 11.1277 -7.1169 -2.5352 42 1 11.2274 -6.0975 -5.1674 43 1 12.7852 -7.1960 -7.9048 44 1 8.7596 -6.9661 -3.0482 45 1 6.7479 -5.5461 -3.0476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715193664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:49 Heat of formation + Delta-G solvation = 56.906554 kcal Electronic energy + Delta-G solvation = -28001.658769 eV Core-core repulsion = 23829.050777 eV Total energy + Delta-G solvation = -4172.607992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.79106 -40.05052 -39.08657 -37.59067 -35.84755 -35.40704 -34.35837 -32.50192 -31.96643 -30.73020 -30.29196 -28.87467 -27.59580 -26.50856 -24.37618 -23.15208 -22.50162 -22.38847 -21.79845 -20.83974 -20.45234 -18.27205 -17.92632 -17.29453 -16.79211 -16.60574 -16.38020 -15.92125 -15.67683 -15.43777 -14.99461 -14.85565 -14.81251 -14.55526 -14.18242 -13.67446 -13.39509 -13.29887 -13.24877 -13.19236 -13.16981 -12.86151 -12.47699 -12.35407 -12.26502 -12.03454 -11.85696 -11.09316 -10.93446 -10.85991 -10.73729 -10.64535 -10.61289 -10.10707 -10.09536 -9.78204 -9.34324 -8.95781 -8.91145 -8.70180 -8.44657 -6.95920 -5.77577 -3.07746 1.20907 1.42044 1.56934 1.62888 2.29205 2.30856 2.65893 3.07164 3.43469 3.47611 3.49020 3.97018 3.98073 4.29666 4.40663 4.48413 4.60514 4.66596 4.68852 4.72467 4.91334 4.95689 5.01228 5.18135 5.31811 5.36566 5.40010 5.55575 5.56367 5.64971 5.73228 5.84080 6.07928 6.11568 6.13756 6.15860 6.19432 6.47352 6.56926 6.61752 6.68317 7.08817 7.16962 7.19870 7.21595 7.65918 7.67086 7.89187 8.39967 9.51498 10.07388 10.43077 11.44737 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.040099 B = 0.001468 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.109297 B =19063.395419 C =19150.508832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.562 5.562 3 C 0.257 3.743 4 N -0.274 5.274 5 N -0.438 5.438 6 C 0.144 3.856 7 C 0.495 3.505 8 O -0.527 6.527 9 N -0.720 5.720 10 C 0.168 3.832 11 C -0.125 4.125 12 C -0.103 4.103 13 C -0.106 4.106 14 C -0.063 4.063 15 C 0.184 3.816 16 N -0.726 5.726 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.106 4.106 26 C -0.103 4.103 27 C 0.652 3.348 28 O -0.551 6.551 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.232 0.768 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.404 0.596 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.124 0.876 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.374 18.594 18.820 35.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.291 5.291 3 C -0.042 4.042 4 N -0.095 5.095 5 N -0.258 5.258 6 C 0.018 3.982 7 C 0.279 3.721 8 O -0.403 6.403 9 N -0.373 5.373 10 C 0.045 3.955 11 C -0.126 4.126 12 C -0.121 4.121 13 C -0.125 4.125 14 C -0.064 4.064 15 C 0.057 3.943 16 N -0.371 5.371 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.125 4.125 26 C -0.121 4.121 27 C 0.351 3.649 28 O -0.424 6.424 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.248 0.752 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.239 0.761 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.142 0.858 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.953 18.230 18.148 34.475 hybrid contribution 0.230 -0.800 -0.361 0.908 sum -22.723 17.430 17.787 33.712 Atomic orbital electron populations 1.21833 0.74016 1.04917 1.03515 1.45854 1.08924 1.06604 1.67669 1.25934 0.85735 0.94791 0.97786 1.76996 1.18302 0.91342 1.22823 1.48158 1.05406 1.03213 1.69022 1.21212 0.85963 0.95532 0.95481 1.20911 0.80760 0.78778 0.91620 1.90744 1.52952 1.50791 1.45799 1.46045 1.29345 1.52400 1.09476 1.20167 0.94286 0.98662 0.82367 1.19654 0.93835 0.93853 1.05275 1.20990 0.91806 0.99494 0.99844 1.21125 0.98592 0.93310 0.99477 1.20399 0.95758 0.94281 0.95945 1.19709 0.90518 0.94657 0.89413 1.42328 1.32981 1.61376 1.00414 1.19197 1.03166 1.23358 0.91837 0.91106 1.24760 0.99402 1.01087 0.95522 1.69662 1.40865 1.49144 0.98255 0.86242 0.82619 0.80245 0.76908 1.21208 1.21648 1.21213 1.21131 0.91777 1.00141 0.99423 1.21004 0.98588 0.92784 0.99759 1.16652 0.81912 0.85116 0.81174 1.91097 1.77608 1.15260 1.58443 0.90790 0.89224 0.89361 0.75201 0.85624 0.85505 0.76140 0.90645 0.90689 0.86291 0.85780 0.95384 0.95382 0.78048 0.93392 0.85778 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.34 11.05 59.84 0.66 1.00 16 2 N -0.56 -4.18 3.14 -130.12 -0.41 -4.59 16 3 C 0.26 1.42 12.66 -89.12 -1.13 0.29 16 4 N -0.27 -2.47 12.53 29.87 0.37 -2.10 16 5 N -0.44 -4.64 3.11 -66.30 -0.21 -4.84 16 6 C 0.14 1.18 6.87 -5.19 -0.04 1.14 16 7 C 0.50 5.53 7.90 -10.98 -0.09 5.44 16 8 O -0.53 -8.32 16.43 5.56 0.09 -8.22 16 9 N -0.72 -6.69 5.55 -61.47 -0.34 -7.03 16 10 C 0.17 1.87 5.80 -5.19 -0.03 1.84 16 11 C -0.13 -1.53 5.25 -104.62 -0.55 -2.08 16 12 C -0.10 -1.32 9.70 -39.58 -0.38 -1.70 16 13 C -0.11 -1.62 9.70 -39.58 -0.38 -2.00 16 14 C -0.06 -1.07 5.25 -104.63 -0.55 -1.62 16 15 C 0.18 3.71 6.38 -5.20 -0.03 3.68 16 16 N -0.73 -18.58 5.59 -61.09 -0.34 -18.92 16 17 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C -0.11 -1.63 9.70 -39.58 -0.38 -2.01 16 26 C -0.10 -1.35 9.70 -39.58 -0.38 -1.73 16 27 C 0.65 7.71 8.60 -86.73 -0.75 6.96 16 28 O -0.55 -8.32 17.71 5.09 0.09 -8.23 16 29 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 31 H 0.09 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.23 -0.04 8.06 -52.49 -0.42 -0.47 16 33 H 0.13 0.82 8.11 -51.93 -0.42 0.40 16 34 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 2.72 8.46 -40.82 -0.35 2.37 16 36 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.39 10.55 7.66 -40.82 -0.31 10.24 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 44 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 45 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -40.15 397.56 -9.44 -49.59 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.11 Total: 6.90 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -4.28 Total: 1.77 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -0.20 Total: -65.16 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.18 Total: -16.46 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -40.15 -9.44 -49.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715193664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.493 kcal (2) G-P(sol) polarization free energy of solvation -40.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds