Wall clock time and date at job start Wed Apr 1 2020 03:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 C 1.37357 * 125.83581 * 2 1 4 4 N 1.29403 * 108.83017 * 179.77654 * 3 2 1 5 5 N 1.40163 * 108.13922 * 0.37651 * 4 3 2 6 6 C 1.46505 * 126.34609 * 179.88290 * 5 4 3 7 7 C 1.50703 * 109.47064 * 269.68765 * 6 5 4 8 8 O 1.21278 * 119.99985 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.38233 * 120.00099 * 269.72651 * 11 10 9 13 13 C 1.38239 * 119.99655 * 179.76882 * 12 11 10 14 14 C 1.38230 * 120.00228 * 0.50243 * 13 12 11 15 15 C 1.50695 * 120.00174 * 179.72734 * 14 13 12 16 16 N 1.46499 * 109.47150 * 270.02349 * 15 14 13 17 17 C 1.36939 * 120.00227 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99691 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00211 * 180.02562 * 17 16 15 20 20 N 1.31612 * 119.99831 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00128 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47083 * 59.99365 * 21 19 17 23 23 H 1.48502 * 109.47066 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46513 * 299.99811 * 21 19 17 25 25 C 1.38238 * 119.99995 * 359.75228 * 14 13 12 26 26 C 1.38238 * 120.00072 * 359.97438 * 25 14 13 27 27 C 1.34819 * 125.83160 * 180.02562 * 2 1 3 28 28 O 1.21813 * 126.30419 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.47531 * 269.97830 * 1 2 3 30 30 H 1.08993 * 109.47457 * 29.98127 * 1 2 3 31 31 H 1.09004 * 109.47618 * 149.98321 * 1 2 3 32 32 H 1.07998 * 125.58045 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47068 * 149.68797 * 6 5 4 34 34 H 1.09001 * 109.47372 * 29.68709 * 6 5 4 35 35 H 0.97000 * 119.99708 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 37 37 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 38 38 H 1.08003 * 119.99927 * 359.97438 * 12 11 10 39 39 H 1.08000 * 119.99431 * 180.23215 * 13 12 11 40 40 H 1.09001 * 109.47176 * 30.01922 * 15 14 13 41 41 H 1.09001 * 109.47298 * 150.02075 * 15 14 13 42 42 H 0.97002 * 120.00308 * 0.02562 * 16 15 14 43 43 H 0.97005 * 120.00467 * 179.97438 * 20 19 17 44 44 H 1.08002 * 119.99952 * 179.97438 * 25 14 13 45 45 H 1.07991 * 120.00062 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7351 0.0048 5 7 3.5343 -0.6662 -0.0007 6 6 4.7312 -1.5110 -0.0004 7 6 5.1415 -1.8013 -1.4211 8 8 4.4978 -1.3470 -2.3431 9 7 6.2238 -2.5659 -1.6672 10 6 6.6230 -2.8477 -3.0483 11 6 7.8542 -3.7167 -3.0480 12 6 9.1092 -3.1373 -3.0536 13 6 10.2385 -3.9345 -3.0485 14 6 10.1128 -5.3111 -3.0483 15 6 11.3439 -6.1802 -3.0489 16 7 11.7424 -6.4615 -4.4303 17 6 12.8425 -7.2374 -4.6811 18 1 13.4161 -7.6423 -3.8605 19 6 13.2204 -7.5035 -5.9901 20 7 12.5210 -7.0105 -6.9901 21 14 14.7206 -8.5626 -6.3323 22 1 14.5235 -9.9078 -5.7351 23 1 14.9094 -8.6943 -7.7993 24 1 15.9220 -7.9268 -5.7342 25 6 8.8578 -5.8906 -3.0480 26 6 7.7284 -5.0934 -3.0474 27 6 2.2541 -1.0930 -0.0005 28 8 1.8804 -2.2524 -0.0006 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.9249 2.1372 0.0004 33 1 4.5150 -2.4474 0.5139 34 1 5.5414 -0.9931 0.5131 35 1 6.7389 -2.9290 -0.9297 36 1 6.8398 -1.9112 -3.5621 37 1 5.8128 -3.3650 -3.5622 38 1 9.2074 -2.0618 -3.0586 39 1 11.2190 -3.4818 -3.0491 40 1 12.1542 -5.6627 -2.5353 41 1 11.1277 -7.1169 -2.5352 42 1 11.2274 -6.0975 -5.1674 43 1 12.7852 -7.1960 -7.9048 44 1 8.7596 -6.9661 -3.0482 45 1 6.7479 -5.5461 -3.0476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715193664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:49 Heat of formation + Delta-G solvation = 28.780465 kcal Electronic energy + Delta-G solvation = -28002.878407 eV Core-core repulsion = 23829.050777 eV Total energy + Delta-G solvation = -4173.827630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.41580 -41.00385 -40.18880 -38.42932 -37.00850 -36.24865 -35.78564 -33.81449 -32.94043 -31.86064 -31.81856 -29.68974 -28.43520 -27.48625 -25.88601 -24.21019 -23.63702 -23.62168 -22.50568 -21.74307 -21.59009 -19.33220 -19.00266 -18.61173 -17.53711 -17.34270 -17.13904 -16.93317 -16.67966 -16.60107 -16.33822 -15.97113 -15.89528 -15.42551 -15.25124 -15.07206 -14.78242 -14.34821 -14.30609 -14.25256 -13.71200 -13.61494 -13.56964 -13.48191 -13.13605 -13.11749 -12.99520 -12.91475 -12.73038 -12.24806 -11.96693 -11.91982 -11.75284 -11.64946 -11.43213 -10.97732 -10.84846 -10.23530 -9.82814 -9.73692 -9.58494 -9.03999 -7.96119 -5.26659 0.21131 0.49763 0.68603 1.08384 1.45392 1.47288 1.50699 1.54706 1.56975 2.09365 2.33665 2.55412 2.87002 3.37019 3.46116 3.60671 3.69457 3.87825 4.03813 4.07356 4.11369 4.12926 4.15298 4.24064 4.26288 4.41066 4.52861 4.55313 4.64630 4.68104 4.79675 4.88488 4.89248 4.89352 4.99963 5.06241 5.19156 5.25699 5.44870 5.46885 5.58552 5.66931 5.80674 6.05102 6.24209 6.40890 6.60031 6.91227 7.09056 7.31006 8.04125 8.29111 9.26896 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.040099 B = 0.001468 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.109297 B =19063.395419 C =19150.508832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.560 5.560 3 C 0.278 3.722 4 N -0.310 5.310 5 N -0.446 5.446 6 C 0.141 3.859 7 C 0.496 3.504 8 O -0.578 6.578 9 N -0.705 5.705 10 C 0.174 3.826 11 C -0.109 4.109 12 C -0.095 4.095 13 C -0.114 4.114 14 C -0.086 4.086 15 C 0.185 3.815 16 N -0.739 5.739 17 C -0.251 4.251 18 H 0.079 0.921 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 0.977 3.023 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.276 1.276 25 C -0.116 4.116 26 C -0.099 4.099 27 C 0.630 3.370 28 O -0.600 6.600 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.067 0.933 32 H 0.288 0.712 33 H 0.140 0.860 34 H 0.161 0.839 35 H 0.419 0.581 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.121 0.879 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.141 20.480 20.379 37.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.287 5.287 3 C -0.020 4.020 4 N -0.131 5.131 5 N -0.265 5.265 6 C 0.016 3.984 7 C 0.281 3.719 8 O -0.457 6.457 9 N -0.359 5.359 10 C 0.050 3.950 11 C -0.110 4.110 12 C -0.114 4.114 13 C -0.133 4.133 14 C -0.087 4.087 15 C 0.059 3.941 16 N -0.382 5.382 17 C -0.383 4.383 18 H 0.097 0.903 19 C -0.266 4.266 20 N -0.620 5.620 21 Si 0.806 3.194 22 H -0.203 1.203 23 H -0.222 1.222 24 H -0.202 1.202 25 C -0.134 4.134 26 C -0.117 4.117 27 C 0.329 3.671 28 O -0.477 6.477 29 H 0.109 0.891 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.303 0.697 33 H 0.157 0.843 34 H 0.178 0.822 35 H 0.256 0.744 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.162 0.838 39 H 0.142 0.858 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.139 0.861 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.703 20.137 19.791 36.865 hybrid contribution 0.344 -1.272 -0.764 1.523 sum -23.359 18.865 19.027 35.547 Atomic orbital electron populations 1.22162 0.71862 1.05863 1.04978 1.46124 1.10217 1.06005 1.66332 1.27106 0.84483 0.96126 0.94244 1.77003 1.20322 0.90259 1.25561 1.48381 1.05416 1.04177 1.68497 1.21451 0.86610 0.96683 0.93648 1.21435 0.80200 0.77871 0.92359 1.90717 1.54588 1.52920 1.47499 1.45877 1.29015 1.51725 1.09259 1.20014 0.93360 0.98222 0.83359 1.19736 0.94082 0.93609 1.03543 1.21197 0.91079 1.00559 0.98519 1.21185 0.99519 0.92783 0.99816 1.20175 0.94938 0.94709 0.98833 1.19772 0.92219 0.95421 0.86650 1.42535 1.32378 1.61056 1.02243 1.19648 1.03605 1.22819 0.92189 0.90338 1.25616 1.02602 1.02978 0.95418 1.69831 1.42786 1.51049 0.98303 0.85162 0.79261 0.78763 0.76254 1.20258 1.22170 1.20173 1.21165 0.91952 1.00346 0.99970 1.21180 0.98689 0.93054 0.98807 1.17087 0.82928 0.85517 0.81603 1.91034 1.78545 1.17321 1.60809 0.89111 0.85234 0.91436 0.69679 0.84255 0.82156 0.74370 0.90709 0.91437 0.83821 0.85839 0.95021 0.95200 0.79539 0.93975 0.86112 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 11.05 127.77 1.41 1.87 16 2 N -0.56 -7.44 3.14 -683.72 -2.15 -9.59 16 3 C 0.28 2.28 12.66 179.82 2.28 4.56 16 4 N -0.31 -5.05 12.53 -59.42 -0.74 -5.79 16 5 N -0.45 -9.08 3.11 -481.76 -1.50 -10.58 16 6 C 0.14 2.15 6.87 85.63 0.59 2.73 16 7 C 0.50 10.61 7.90 87.66 0.69 11.31 16 8 O -0.58 -18.21 16.43 -3.02 -0.05 -18.26 16 9 N -0.71 -11.93 5.55 -466.78 -2.59 -14.52 16 10 C 0.17 3.61 5.80 85.63 0.50 4.11 16 11 C -0.11 -2.47 5.25 -19.86 -0.10 -2.57 16 12 C -0.10 -2.27 9.70 22.27 0.22 -2.05 16 13 C -0.11 -3.40 9.70 22.27 0.22 -3.18 16 14 C -0.09 -2.91 5.25 -19.87 -0.10 -3.02 16 15 C 0.19 7.55 6.38 85.63 0.55 8.10 16 16 N -0.74 -38.49 5.59 -347.18 -1.94 -40.44 16 17 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 18 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 19 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 20 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 21 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 C -0.12 -3.52 9.70 22.27 0.22 -3.30 16 26 C -0.10 -2.46 9.70 22.27 0.22 -2.24 16 27 C 0.63 14.82 8.60 178.99 1.54 16.36 16 28 O -0.60 -18.77 17.71 -4.71 -0.08 -18.86 16 29 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.13 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.07 0.65 8.08 -2.38 -0.02 0.63 16 32 H 0.29 -1.53 8.06 -2.91 -0.02 -1.55 16 33 H 0.14 1.69 8.11 -2.39 -0.02 1.67 16 34 H 0.16 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.42 4.66 8.46 -92.71 -0.78 3.88 16 36 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 37 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 38 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.03 1.27 8.09 -2.39 -0.02 1.25 16 41 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 42 H 0.37 20.97 7.66 -92.71 -0.71 20.26 16 43 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 44 H 0.12 3.67 8.06 -2.91 -0.02 3.64 16 45 H 0.14 2.90 8.06 -2.92 -0.02 2.87 16 Total: -1.00 -90.79 397.56 2.31 -88.48 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.46 Total: 25.70 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 9.51 Total: 15.49 kcal Atomic # 7 Polarization: -132.26 SS G_CDS: -8.64 Total: -140.90 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.13 Total: -37.12 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -90.79 2.31 -88.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715193664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.263 kcal (2) G-P(sol) polarization free energy of solvation -90.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds