Wall clock time and date at job start Wed Apr 1 2020 03:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34458 * 125.77060 * 2 1 4 4 C 1.38075 * 107.39057 * 179.75134 * 3 2 1 5 5 C 1.47360 * 126.40942 * 180.28041 * 4 3 2 6 6 O 1.34257 * 127.19259 * 48.19926 * 5 4 3 7 7 N 1.20737 * 111.94657 * 179.97438 * 6 5 4 8 8 C 1.29874 * 112.81508 * 359.97438 * 7 6 5 9 9 C 1.39925 * 127.19527 * 227.87621 * 5 4 3 10 10 C 1.46918 * 128.39709 * 359.97438 * 9 5 4 11 11 O 1.21677 * 119.99613 * 5.32806 * 10 9 5 12 12 N 1.34775 * 120.00057 * 185.33118 * 10 9 5 13 13 C 1.46503 * 119.99858 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46790 * 324.99855 * 13 12 10 15 15 C 1.53006 * 109.46965 * 205.00153 * 13 12 10 16 16 N 1.46493 * 109.46964 * 54.99979 * 15 13 12 17 17 C 1.36942 * 119.99708 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00001 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99727 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99993 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99657 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47173 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47423 * 119.99398 * 21 19 17 24 24 H 1.48503 * 109.47149 * 239.99443 * 21 19 17 25 25 C 1.52999 * 109.47245 * 85.00232 * 13 12 10 26 26 C 1.52998 * 117.49633 * 8.74321 * 25 13 12 27 27 C 1.53004 * 117.49493 * 300.08615 * 25 13 12 28 28 C 1.41304 * 107.17896 * 0.41840 * 4 3 2 29 29 N 1.30484 * 108.05407 * 359.57695 * 28 4 3 30 30 H 1.09005 * 109.47469 * 270.00228 * 1 2 3 31 31 H 1.09008 * 109.47023 * 30.00011 * 1 2 3 32 32 H 1.08996 * 109.47283 * 150.00124 * 1 2 3 33 33 H 1.08005 * 126.30539 * 359.97438 * 3 2 1 34 34 H 1.08004 * 126.79097 * 179.97438 * 8 7 6 35 35 H 0.96998 * 119.99874 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.46902 * 175.00011 * 15 13 12 37 37 H 1.08998 * 109.46776 * 295.00118 * 15 13 12 38 38 H 0.97003 * 120.00358 * 0.02562 * 16 15 13 39 39 H 0.97003 * 119.99753 * 180.02562 * 20 19 17 40 40 H 1.08998 * 115.54993 * 154.41811 * 25 13 12 41 41 H 1.08993 * 117.50510 * 0.02562 * 26 25 13 42 42 H 1.09000 * 117.49774 * 145.02407 * 26 25 13 43 43 H 1.09000 * 117.49480 * 214.98085 * 27 25 13 44 44 H 1.08998 * 117.50021 * 359.97438 * 27 25 13 45 45 H 1.07998 * 125.96954 * 179.83404 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2509 1.0909 0.0000 4 6 3.5612 0.6556 0.0057 5 6 4.7652 1.5052 0.0136 6 8 5.0132 2.5539 0.8144 7 7 6.0883 3.0529 0.5845 8 6 6.7281 2.4518 -0.3726 9 6 5.8915 1.3839 -0.8077 10 6 6.1487 0.3952 -1.8635 11 8 5.2816 -0.3982 -2.1783 12 7 7.3451 0.3671 -2.4834 13 6 7.6018 -0.6192 -3.5359 14 1 7.0882 -1.5499 -3.2947 15 6 9.1064 -0.8782 -3.6362 16 7 9.6218 -1.2765 -2.3241 17 6 10.9523 -1.5611 -2.1688 18 1 11.6215 -1.4922 -3.0137 19 6 11.4407 -1.9391 -0.9255 20 7 10.6250 -2.0235 0.1040 21 14 13.2557 -2.3266 -0.7135 22 1 13.9531 -2.1573 -2.0135 23 1 13.8453 -1.4031 0.2889 24 1 13.4115 -3.7279 -0.2474 25 6 7.0861 -0.0839 -4.8732 26 6 6.6228 1.3735 -4.9193 27 6 5.5945 0.2410 -4.9762 28 6 3.5316 -0.7571 -0.0007 29 7 2.2828 -1.1355 -0.0004 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8899 -0.5138 33 1 1.9185 2.1186 -0.0004 34 1 7.7030 2.7089 -0.7601 35 1 8.0362 0.9998 -2.2327 36 1 9.2906 -1.6754 -4.3563 37 1 9.6104 0.0310 -3.9638 38 1 9.0208 -1.3388 -1.5653 39 1 10.9664 -2.2873 0.9728 40 1 7.5764 -0.4845 -5.7604 41 1 6.6856 1.9511 -3.9971 42 1 6.8079 1.9317 -5.8371 43 1 5.1037 0.0545 -5.9314 44 1 4.9806 0.0729 -4.0914 45 1 4.3922 -1.4096 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716616177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:29 Heat of formation + Delta-G solvation = 156.633179 kcal Electronic energy + Delta-G solvation = -30413.584584 eV Core-core repulsion = 26245.301063 eV Total energy + Delta-G solvation = -4168.283521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.84555 -41.25575 -39.86578 -37.08508 -34.90166 -34.05027 -33.87554 -33.07536 -32.28853 -31.12344 -29.63478 -28.25160 -26.96687 -24.79980 -23.95470 -22.97852 -22.22861 -21.54301 -21.36268 -21.00877 -20.18755 -19.63661 -18.31277 -17.60205 -17.37491 -17.04192 -16.01234 -15.90276 -15.74491 -15.67080 -14.91451 -14.60242 -14.43047 -14.22796 -13.64170 -13.48476 -13.38607 -13.27493 -13.16534 -13.01799 -12.85857 -12.63170 -12.08808 -11.66359 -11.63961 -11.35119 -11.22052 -10.96873 -10.89742 -10.84255 -10.43536 -10.22405 -10.07809 -9.82075 -9.80145 -9.74150 -9.60108 -9.54524 -8.92852 -8.65714 -8.35870 -6.96759 -5.78648 -3.08518 0.84960 1.70310 1.92328 2.17811 2.55493 3.00292 3.41973 3.45430 3.48111 3.50267 3.51065 4.07418 4.20690 4.30161 4.50625 4.55842 4.67086 4.74332 4.80900 4.92729 5.03348 5.08953 5.17727 5.21325 5.22409 5.35083 5.53745 5.54663 5.62351 5.65663 5.77596 5.85205 5.88212 6.02257 6.03211 6.23630 6.32880 6.41598 6.48004 6.54450 6.64350 6.68592 6.92092 7.49350 7.68354 7.80883 8.18516 8.38916 8.48597 9.51129 10.06526 10.41896 11.43490 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.003225 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.557562 B = 8679.522763 C = 9479.045302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.367 5.367 3 C 0.097 3.903 4 C -0.189 4.189 5 C 0.126 3.874 6 O 0.102 5.898 7 N -0.367 5.367 8 C 0.033 3.967 9 C -0.244 4.244 10 C 0.598 3.402 11 O -0.530 6.530 12 N -0.700 5.700 13 C 0.171 3.829 14 H 0.093 0.907 15 C 0.148 3.852 16 N -0.731 5.731 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.160 4.160 26 C -0.178 4.178 27 C -0.186 4.186 28 C 0.128 3.872 29 N -0.299 5.299 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.183 0.817 34 H 0.198 0.802 35 H 0.404 0.596 36 H 0.035 0.965 37 H 0.026 0.974 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.117 0.883 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.934 10.058 -3.574 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.146 5.146 3 C -0.054 4.054 4 C -0.202 4.202 5 C 0.059 3.941 6 O 0.041 5.959 7 N -0.072 5.072 8 C -0.146 4.146 9 C -0.252 4.252 10 C 0.384 3.616 11 O -0.408 6.408 12 N -0.350 5.350 13 C 0.067 3.933 14 H 0.111 0.889 15 C 0.020 3.980 16 N -0.376 5.376 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.179 4.179 26 C -0.215 4.215 27 C -0.223 4.223 28 C -0.060 4.060 29 N -0.118 5.118 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.200 0.800 34 H 0.215 0.785 35 H 0.239 0.761 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.135 0.865 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -21.069 9.488 -3.055 23.308 hybrid contribution 2.017 0.275 -0.091 2.038 sum -19.052 9.763 -3.146 21.638 Atomic orbital electron populations 1.21935 0.73659 1.04845 1.03685 1.48296 1.07051 1.03859 1.55371 1.22900 0.89994 0.93697 0.98776 1.17650 0.88196 0.92016 1.22326 1.21991 0.94048 0.88513 0.89561 1.84870 1.28491 1.35222 1.47306 1.73516 0.94578 1.20960 1.18193 1.25032 1.01724 0.93402 0.94475 1.21418 0.96574 1.02679 1.04533 1.16638 0.82627 0.82354 0.79937 1.90750 1.44747 1.40428 1.64889 1.45766 1.14476 1.36695 1.38038 1.20768 0.97253 0.91433 0.83893 0.88857 1.20916 0.88990 0.97734 0.90402 1.42352 1.07466 1.82277 1.05545 1.19240 0.85015 1.38476 0.94582 0.91103 1.24744 0.97789 1.02352 0.95874 1.69674 1.33630 1.54199 1.00226 0.86138 0.85029 0.77640 0.77470 1.20573 1.21898 1.21880 1.22695 0.97572 0.98645 0.99022 1.22877 1.04861 0.91292 1.02463 1.23333 0.92395 1.02701 1.03865 1.23980 0.94969 0.92847 0.94158 1.77302 1.01620 1.07165 1.25736 0.90343 0.89278 0.88915 0.79964 0.78482 0.76084 0.94764 0.95599 0.77972 0.93536 0.87286 0.89073 0.89606 0.89912 0.86464 0.79116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 11.44 59.84 0.68 1.20 16 2 N -0.37 -3.71 3.99 -67.54 -0.27 -3.98 16 3 C 0.10 0.94 11.51 -16.46 -0.19 0.75 16 4 C -0.19 -2.42 5.57 -105.08 -0.58 -3.01 16 5 C 0.13 1.72 7.39 -35.24 -0.26 1.46 16 6 O 0.10 1.38 11.17 16.65 0.19 1.57 16 7 N -0.37 -5.24 11.97 30.85 0.37 -4.87 16 8 C 0.03 0.45 11.68 -16.75 -0.20 0.25 16 9 C -0.24 -3.54 6.36 -104.12 -0.66 -4.20 16 10 C 0.60 9.41 6.63 -12.75 -0.08 9.33 16 11 O -0.53 -9.20 11.56 5.21 0.06 -9.14 16 12 N -0.70 -10.70 3.05 -55.03 -0.17 -10.86 16 13 C 0.17 2.76 2.59 -67.93 -0.18 2.59 16 14 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 15 C 0.15 2.77 5.80 -4.04 -0.02 2.75 16 16 N -0.73 -17.58 5.43 -59.91 -0.33 -17.91 16 17 C -0.24 -6.54 9.99 -15.06 -0.15 -6.70 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 C -0.16 -2.20 5.71 -90.62 -0.52 -2.72 16 26 C -0.18 -2.24 9.74 -26.69 -0.26 -2.50 16 27 C -0.19 -2.53 9.82 -26.69 -0.26 -2.79 16 28 C 0.13 1.82 10.38 -16.96 -0.18 1.64 16 29 N -0.30 -4.08 12.50 30.87 0.39 -3.70 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.18 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.20 2.18 7.77 -52.48 -0.41 1.77 16 35 H 0.40 5.94 7.85 -40.82 -0.32 5.61 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.39 9.92 7.33 -40.82 -0.30 9.62 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.11 1.39 8.11 -51.93 -0.42 0.97 16 41 H 0.09 1.17 6.67 -51.93 -0.35 0.83 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.12 1.85 5.01 -51.93 -0.26 1.59 16 45 H 0.19 2.82 7.80 -52.49 -0.41 2.41 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -33.70 383.04 -7.03 -40.73 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -5.79 Total: 14.56 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.95 Total: -2.36 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: 0.72 Total: -68.22 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.25 Total: -7.57 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.70 -7.03 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716616177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.361 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds