Wall clock time and date at job start Wed Apr 1 2020 03:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34458 * 125.77060 * 2 1 4 4 C 1.38075 * 107.39057 * 179.75134 * 3 2 1 5 5 C 1.47360 * 126.40942 * 180.28041 * 4 3 2 6 6 O 1.34257 * 127.19259 * 48.19926 * 5 4 3 7 7 N 1.20737 * 111.94657 * 179.97438 * 6 5 4 8 8 C 1.29874 * 112.81508 * 359.97438 * 7 6 5 9 9 C 1.39925 * 127.19527 * 227.87621 * 5 4 3 10 10 C 1.46918 * 128.39709 * 359.97438 * 9 5 4 11 11 O 1.21677 * 119.99613 * 5.32806 * 10 9 5 12 12 N 1.34775 * 120.00057 * 185.33118 * 10 9 5 13 13 C 1.46503 * 119.99858 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46790 * 324.99855 * 13 12 10 15 15 C 1.53006 * 109.46965 * 205.00153 * 13 12 10 16 16 N 1.46493 * 109.46964 * 54.99979 * 15 13 12 17 17 C 1.36942 * 119.99708 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00001 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99727 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99993 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99657 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47173 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47423 * 119.99398 * 21 19 17 24 24 H 1.48503 * 109.47149 * 239.99443 * 21 19 17 25 25 C 1.52999 * 109.47245 * 85.00232 * 13 12 10 26 26 C 1.52998 * 117.49633 * 8.74321 * 25 13 12 27 27 C 1.53004 * 117.49493 * 300.08615 * 25 13 12 28 28 C 1.41304 * 107.17896 * 0.41840 * 4 3 2 29 29 N 1.30484 * 108.05407 * 359.57695 * 28 4 3 30 30 H 1.09005 * 109.47469 * 270.00228 * 1 2 3 31 31 H 1.09008 * 109.47023 * 30.00011 * 1 2 3 32 32 H 1.08996 * 109.47283 * 150.00124 * 1 2 3 33 33 H 1.08005 * 126.30539 * 359.97438 * 3 2 1 34 34 H 1.08004 * 126.79097 * 179.97438 * 8 7 6 35 35 H 0.96998 * 119.99874 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.46902 * 175.00011 * 15 13 12 37 37 H 1.08998 * 109.46776 * 295.00118 * 15 13 12 38 38 H 0.97003 * 120.00358 * 0.02562 * 16 15 13 39 39 H 0.97003 * 119.99753 * 180.02562 * 20 19 17 40 40 H 1.08998 * 115.54993 * 154.41811 * 25 13 12 41 41 H 1.08993 * 117.50510 * 0.02562 * 26 25 13 42 42 H 1.09000 * 117.49774 * 145.02407 * 26 25 13 43 43 H 1.09000 * 117.49480 * 214.98085 * 27 25 13 44 44 H 1.08998 * 117.50021 * 359.97438 * 27 25 13 45 45 H 1.07998 * 125.96954 * 179.83404 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2509 1.0909 0.0000 4 6 3.5612 0.6556 0.0057 5 6 4.7652 1.5052 0.0136 6 8 5.0132 2.5539 0.8144 7 7 6.0883 3.0529 0.5845 8 6 6.7281 2.4518 -0.3726 9 6 5.8915 1.3839 -0.8077 10 6 6.1487 0.3952 -1.8635 11 8 5.2816 -0.3982 -2.1783 12 7 7.3451 0.3671 -2.4834 13 6 7.6018 -0.6192 -3.5359 14 1 7.0882 -1.5499 -3.2947 15 6 9.1064 -0.8782 -3.6362 16 7 9.6218 -1.2765 -2.3241 17 6 10.9523 -1.5611 -2.1688 18 1 11.6215 -1.4922 -3.0137 19 6 11.4407 -1.9391 -0.9255 20 7 10.6250 -2.0235 0.1040 21 14 13.2557 -2.3266 -0.7135 22 1 13.9531 -2.1573 -2.0135 23 1 13.8453 -1.4031 0.2889 24 1 13.4115 -3.7279 -0.2474 25 6 7.0861 -0.0839 -4.8732 26 6 6.6228 1.3735 -4.9193 27 6 5.5945 0.2410 -4.9762 28 6 3.5316 -0.7571 -0.0007 29 7 2.2828 -1.1355 -0.0004 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8899 -0.5138 33 1 1.9185 2.1186 -0.0004 34 1 7.7030 2.7089 -0.7601 35 1 8.0362 0.9998 -2.2327 36 1 9.2906 -1.6754 -4.3563 37 1 9.6104 0.0310 -3.9638 38 1 9.0208 -1.3388 -1.5653 39 1 10.9664 -2.2873 0.9728 40 1 7.5764 -0.4845 -5.7604 41 1 6.6856 1.9511 -3.9971 42 1 6.8079 1.9317 -5.8371 43 1 5.1037 0.0545 -5.9314 44 1 4.9806 0.0729 -4.0914 45 1 4.3922 -1.4096 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716616177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:28 Heat of formation + Delta-G solvation = 134.553580 kcal Electronic energy + Delta-G solvation = -30414.542027 eV Core-core repulsion = 26245.301063 eV Total energy + Delta-G solvation = -4169.240964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.91647 -42.14252 -41.11008 -38.31802 -36.52237 -35.19321 -34.81248 -34.43953 -33.27089 -32.91614 -30.61124 -29.78004 -27.69635 -26.23247 -25.53964 -23.98597 -23.42230 -22.94854 -22.45519 -21.87822 -21.29536 -20.86631 -19.45564 -19.07863 -18.64621 -18.22346 -17.17367 -17.14232 -16.86032 -16.55317 -16.40049 -15.89121 -15.43511 -15.41379 -15.14839 -14.99625 -14.78751 -14.35682 -14.30917 -14.04593 -13.64349 -13.57882 -13.26920 -13.10970 -12.86189 -12.72853 -12.69518 -12.62889 -12.29686 -12.02589 -11.91102 -11.81791 -11.51548 -11.28774 -10.99737 -10.93527 -10.83748 -10.75436 -10.49846 -9.91943 -9.31253 -8.98180 -7.92089 -5.21067 -0.18762 0.80846 0.85142 1.38213 1.49100 1.49917 1.59036 1.59513 1.91161 2.29412 2.33258 2.57309 2.99244 3.23275 3.37005 3.42837 3.62851 3.67408 3.84989 3.89279 4.00522 4.12165 4.14082 4.22139 4.24221 4.42827 4.47984 4.51402 4.54287 4.67163 4.68231 4.70684 4.76102 4.83309 4.86974 4.92904 5.09231 5.18689 5.30313 5.38857 5.43563 5.53531 5.60770 5.95422 6.28430 6.56031 6.57247 7.11538 7.25902 7.36363 8.10202 8.33745 9.30815 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.003225 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.557562 B = 8679.522763 C = 9479.045302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.360 5.360 3 C 0.123 3.877 4 C -0.221 4.221 5 C 0.139 3.861 6 O 0.104 5.896 7 N -0.381 5.381 8 C 0.039 3.961 9 C -0.267 4.267 10 C 0.598 3.402 11 O -0.549 6.549 12 N -0.696 5.696 13 C 0.183 3.817 14 H 0.065 0.935 15 C 0.150 3.850 16 N -0.742 5.742 17 C -0.239 4.239 18 H 0.079 0.921 19 C -0.073 4.073 20 N -0.967 5.967 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.295 1.295 24 H -0.299 1.299 25 C -0.164 4.164 26 C -0.162 4.162 27 C -0.188 4.188 28 C 0.110 3.890 29 N -0.329 5.329 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.230 0.770 34 H 0.218 0.782 35 H 0.407 0.593 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.375 0.625 39 H 0.248 0.752 40 H 0.124 0.876 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.856 11.967 -4.910 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.138 5.138 3 C -0.029 4.029 4 C -0.235 4.235 5 C 0.072 3.928 6 O 0.045 5.955 7 N -0.088 5.088 8 C -0.141 4.141 9 C -0.275 4.275 10 C 0.386 3.614 11 O -0.429 6.429 12 N -0.347 5.347 13 C 0.078 3.922 14 H 0.083 0.917 15 C 0.023 3.977 16 N -0.385 5.385 17 C -0.370 4.370 18 H 0.097 0.903 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.799 3.201 22 H -0.189 1.189 23 H -0.222 1.222 24 H -0.226 1.226 25 C -0.184 4.184 26 C -0.199 4.199 27 C -0.225 4.225 28 C -0.077 4.077 29 N -0.150 5.150 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.110 0.890 33 H 0.246 0.754 34 H 0.234 0.766 35 H 0.243 0.757 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.207 0.793 39 H 0.057 0.943 40 H 0.142 0.858 41 H 0.105 0.895 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -22.009 11.400 -4.438 25.180 hybrid contribution 2.130 -0.332 0.287 2.175 sum -19.878 11.069 -4.151 23.128 Atomic orbital electron populations 1.22410 0.70639 1.06611 1.05464 1.48730 1.08617 1.02988 1.53487 1.23539 0.88558 0.95300 0.95505 1.17781 0.89389 0.91309 1.24984 1.22151 0.94031 0.88033 0.88604 1.84859 1.28337 1.35233 1.47083 1.73495 0.94968 1.21621 1.18679 1.25323 1.02193 0.92667 0.93909 1.21362 0.97738 1.03263 1.05148 1.16772 0.82360 0.82302 0.79962 1.90744 1.45388 1.41303 1.65499 1.45682 1.14526 1.36463 1.38006 1.20492 0.95183 0.90929 0.85618 0.91656 1.21040 0.90617 0.98042 0.87964 1.42524 1.06567 1.82308 1.07129 1.19643 0.86327 1.36491 0.94574 0.90285 1.25510 1.01670 1.03502 0.95903 1.69834 1.35316 1.56188 1.00420 0.85126 0.80607 0.76594 0.77729 1.18851 1.22240 1.22635 1.22611 0.97950 1.00005 0.97820 1.22942 1.03061 0.90546 1.03341 1.23256 0.91994 1.03587 1.03662 1.23751 0.94901 0.93609 0.95404 1.77209 1.01755 1.09309 1.26750 0.88516 0.85692 0.89040 0.75393 0.76580 0.75691 0.94418 0.94096 0.79322 0.94271 0.85765 0.89450 0.87361 0.88263 0.88822 0.81327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.44 127.77 1.46 2.11 16 2 N -0.36 -6.68 3.99 -367.59 -1.47 -8.14 16 3 C 0.12 2.13 11.51 84.25 0.97 3.10 16 4 C -0.22 -5.69 5.57 -20.16 -0.11 -5.81 16 5 C 0.14 3.82 7.39 25.08 0.19 4.01 16 6 O 0.10 2.77 11.17 69.79 0.78 3.55 16 7 N -0.38 -10.70 11.97 -56.83 -0.68 -11.38 16 8 C 0.04 1.03 11.68 86.04 1.01 2.03 16 9 C -0.27 -7.88 6.36 -19.54 -0.12 -8.01 16 10 C 0.60 19.45 6.63 86.52 0.57 20.02 16 11 O -0.55 -20.03 11.56 -4.27 -0.05 -20.08 16 12 N -0.70 -21.59 3.05 -446.25 -1.36 -22.95 16 13 C 0.18 5.93 2.59 44.99 0.12 6.05 16 14 H 0.07 2.50 7.58 -2.39 -0.02 2.48 16 15 C 0.15 5.56 5.80 86.38 0.50 6.06 16 16 N -0.74 -35.95 5.43 -343.45 -1.87 -37.81 16 17 C -0.24 -12.83 9.99 84.03 0.84 -11.99 16 18 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 20 N -0.97 -58.79 13.06 21.65 0.28 -58.51 16 21 Si 0.97 45.72 29.55 68.60 2.03 47.74 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 25 C -0.16 -4.31 5.71 -10.79 -0.06 -4.37 16 26 C -0.16 -3.74 9.74 30.62 0.30 -3.44 16 27 C -0.19 -4.90 9.82 30.62 0.30 -4.60 16 28 C 0.11 3.31 10.38 85.65 0.89 4.20 16 29 N -0.33 -9.19 12.50 -56.25 -0.70 -9.89 16 30 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.12 0.08 8.14 -2.38 -0.02 0.06 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.23 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.22 4.63 7.77 -2.91 -0.02 4.61 16 35 H 0.41 11.97 7.85 -92.71 -0.73 11.25 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.37 19.80 7.33 -92.71 -0.68 19.12 16 39 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16 40 H 0.12 2.89 8.11 -2.39 -0.02 2.88 16 41 H 0.09 2.11 6.67 -2.39 -0.02 2.09 16 42 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.09 2.98 5.01 -2.39 -0.01 2.96 16 45 H 0.17 5.60 7.80 -2.91 -0.02 5.58 16 Total: -1.00 -74.59 383.04 3.92 -70.67 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -0.35 Total: 41.13 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 7.31 Total: 5.68 kcal Atomic # 7 Polarization: -142.89 SS G_CDS: -5.79 Total: -148.69 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.73 Total: -16.54 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -74.59 3.92 -70.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716616177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.221 kcal (2) G-P(sol) polarization free energy of solvation -74.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds