Wall clock time and date at job start Wed Apr 1 2020 03:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34456 * 125.76919 * 2 1 4 4 C 1.38071 * 107.39106 * 180.13943 * 3 2 1 5 5 C 1.47353 * 126.41257 * 179.87005 * 4 3 2 6 6 O 1.34255 * 127.19603 * 312.12567 * 5 4 3 7 7 N 1.20737 * 111.95262 * 180.32816 * 6 5 4 8 8 C 1.29874 * 112.81629 * 359.72011 * 7 6 5 9 9 C 1.39932 * 127.19910 * 131.99697 * 5 4 3 10 10 C 1.46913 * 128.39147 * 359.95988 * 9 5 4 11 11 O 1.21672 * 120.00424 * 354.25584 * 10 9 5 12 12 N 1.34776 * 119.99878 * 174.24831 * 10 9 5 13 13 C 1.46500 * 120.00137 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47065 * 35.00497 * 13 12 10 15 15 C 1.53001 * 109.47143 * 155.00568 * 13 12 10 16 16 N 1.46509 * 109.47058 * 304.99870 * 15 13 12 17 17 C 1.36931 * 120.00169 * 179.72493 * 16 15 13 18 18 H 1.08000 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00130 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00209 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00187 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46983 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47117 * 119.99989 * 21 19 17 24 24 H 1.48498 * 109.46823 * 239.99975 * 21 19 17 25 25 C 1.53001 * 109.47185 * 275.00180 * 13 12 10 26 26 C 1.53003 * 117.49852 * 128.74831 * 25 13 12 27 27 C 1.53003 * 117.49658 * 60.09069 * 25 13 12 28 28 C 1.41306 * 107.17869 * 359.60681 * 4 3 2 29 29 N 1.30483 * 108.05302 * 0.24271 * 28 4 3 30 30 H 1.08999 * 109.47380 * 270.32264 * 1 2 3 31 31 H 1.09007 * 109.46501 * 30.32507 * 1 2 3 32 32 H 1.08999 * 109.47071 * 150.31804 * 1 2 3 33 33 H 1.08002 * 126.30938 * 359.97438 * 3 2 1 34 34 H 1.07995 * 126.79596 * 179.97438 * 8 7 6 35 35 H 0.97001 * 120.00063 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.47018 * 185.00526 * 15 13 12 37 37 H 1.08997 * 109.47529 * 64.99882 * 15 13 12 38 38 H 0.96997 * 119.99516 * 0.02562 * 16 15 13 39 39 H 0.96998 * 120.00272 * 179.97438 * 20 19 17 40 40 H 1.08997 * 115.55128 * 274.41594 * 25 13 12 41 41 H 1.09005 * 117.49466 * 359.97438 * 26 25 13 42 42 H 1.08998 * 117.50075 * 145.02088 * 26 25 13 43 43 H 1.09002 * 117.49327 * 214.97506 * 27 25 13 44 44 H 1.08995 * 117.49613 * 359.97245 * 27 25 13 45 45 H 1.08004 * 125.97696 * 180.25896 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0909 0.0000 4 6 3.5612 0.6556 -0.0032 5 6 4.7652 1.5052 -0.0071 6 8 5.0126 2.5587 -0.8017 7 7 6.0905 3.0526 -0.5738 8 6 6.7305 2.4468 0.3802 9 6 5.8886 1.3843 0.8184 10 6 6.1413 0.3969 1.8764 11 8 5.2700 -0.3906 2.1945 12 7 7.3384 0.3632 2.4947 13 6 7.5907 -0.6218 3.5495 14 1 7.0713 -1.5501 3.3114 15 6 9.0939 -0.8893 3.6485 16 7 9.6053 -1.2942 2.3366 17 6 10.9347 -1.5821 2.1791 18 1 11.6062 -1.5110 3.0220 19 6 11.4193 -1.9652 0.9361 20 7 10.6010 -2.0523 -0.0911 21 14 13.2328 -2.3585 0.7213 22 1 13.9337 -2.1862 2.0190 23 1 13.3836 -3.7617 0.2592 24 1 13.8227 -1.4398 -0.2852 25 6 7.0800 -0.0799 4.8861 26 6 6.1540 -0.9805 5.7061 27 6 5.5897 0.2501 4.9915 28 6 3.5317 -0.7571 0.0041 29 7 2.2829 -1.1354 0.0059 30 1 -0.3634 0.0058 1.0276 31 1 -0.3632 0.8871 -0.5189 32 1 -0.3633 -0.8928 -0.5089 33 1 1.9186 2.1186 -0.0004 34 1 7.7078 2.6984 0.7649 35 1 8.0330 0.9911 2.2414 36 1 9.2743 -1.6858 4.3704 37 1 9.6038 0.0177 3.9731 38 1 9.0029 -1.3542 1.5787 39 1 10.9397 -2.3196 -0.9598 40 1 7.7763 0.5564 5.4323 41 1 5.9082 -1.9588 5.2930 42 1 6.2408 -0.9363 6.7917 43 1 5.3057 1.1033 5.6075 44 1 4.9733 0.0816 4.1086 45 1 4.3922 -1.4097 0.0078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716616178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:33 Heat of formation + Delta-G solvation = 152.286494 kcal Electronic energy + Delta-G solvation = -30255.132710 eV Core-core repulsion = 26086.660703 eV Total energy + Delta-G solvation = -4168.472007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.82861 -41.24917 -39.66402 -37.13252 -35.01028 -34.02789 -33.87394 -33.17848 -32.27798 -31.07393 -29.62791 -28.15183 -26.95244 -24.79867 -23.88577 -22.95963 -22.12571 -21.54573 -21.31658 -20.98768 -20.14227 -19.99344 -18.29770 -17.58001 -17.38139 -16.95989 -16.07090 -15.95451 -15.66541 -15.19226 -14.99510 -14.67918 -14.54190 -14.27053 -13.62963 -13.53950 -13.39431 -13.26322 -13.11556 -13.02550 -12.85084 -12.61786 -12.11388 -11.68730 -11.63256 -11.25359 -11.03278 -10.96388 -10.90098 -10.83011 -10.41954 -10.15887 -10.12126 -9.93191 -9.79300 -9.74549 -9.66535 -9.55538 -8.92871 -8.63347 -8.34541 -6.96901 -5.78589 -3.08565 0.86363 1.71326 1.94243 2.18511 2.56544 3.01375 3.41917 3.45393 3.48118 3.49672 3.50319 4.12377 4.21879 4.35916 4.51200 4.55306 4.67780 4.76350 4.82179 4.90419 5.04305 5.09470 5.18065 5.20316 5.29510 5.36302 5.47795 5.54699 5.62524 5.66890 5.79456 5.86401 5.89096 5.91688 6.10004 6.23274 6.37581 6.42162 6.48467 6.54280 6.64978 6.67255 6.93493 7.49960 7.68292 7.84324 8.20131 8.38901 8.51674 9.51110 10.06370 10.41873 11.43545 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.003252 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.585234 B = 8607.717330 C = 9639.800249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.367 5.367 3 C 0.096 3.904 4 C -0.188 4.188 5 C 0.125 3.875 6 O 0.102 5.898 7 N -0.368 5.368 8 C 0.034 3.966 9 C -0.243 4.243 10 C 0.599 3.401 11 O -0.533 6.533 12 N -0.698 5.698 13 C 0.171 3.829 14 H 0.090 0.910 15 C 0.148 3.852 16 N -0.731 5.731 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.163 4.163 26 C -0.171 4.171 27 C -0.184 4.184 28 C 0.128 3.872 29 N -0.299 5.299 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.183 0.817 34 H 0.198 0.802 35 H 0.403 0.597 36 H 0.036 0.964 37 H 0.025 0.975 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.118 0.882 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.973 9.659 3.633 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.146 5.146 3 C -0.054 4.054 4 C -0.201 4.201 5 C 0.058 3.942 6 O 0.041 5.959 7 N -0.073 5.073 8 C -0.146 4.146 9 C -0.251 4.251 10 C 0.386 3.614 11 O -0.412 6.412 12 N -0.347 5.347 13 C 0.067 3.933 14 H 0.108 0.892 15 C 0.020 3.980 16 N -0.376 5.376 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.182 4.182 26 C -0.208 4.208 27 C -0.221 4.221 28 C -0.060 4.060 29 N -0.118 5.118 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.200 0.800 34 H 0.215 0.785 35 H 0.238 0.762 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.136 0.864 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -21.103 9.094 3.117 23.189 hybrid contribution 2.024 0.301 0.107 2.049 sum -19.079 9.395 3.224 21.510 Atomic orbital electron populations 1.21936 0.73668 1.04788 1.03735 1.48295 1.07045 1.03861 1.55392 1.22896 0.90000 0.93694 0.98816 1.17646 0.88196 0.92010 1.22252 1.21987 0.94130 0.88487 0.89623 1.84864 1.28307 1.35021 1.47729 1.73514 0.94408 1.21121 1.18283 1.25033 1.01723 0.93459 0.94362 1.21425 0.96592 1.02760 1.04281 1.16613 0.82615 0.82220 0.79956 1.90738 1.44519 1.40853 1.65095 1.45743 1.14220 1.36941 1.37844 1.20814 0.97420 0.91234 0.83829 0.89179 1.20924 0.88932 0.97733 0.90433 1.42351 1.07595 1.82079 1.05619 1.19237 0.85048 1.38370 0.94670 0.91100 1.24743 0.97793 1.02330 0.95886 1.69671 1.33599 1.54105 1.00354 0.86138 0.85006 0.77661 0.77477 1.20570 1.21867 1.21897 1.22650 0.93340 1.04040 0.98215 1.22892 1.04091 0.95808 0.98050 1.23260 0.96352 0.98520 1.03994 1.23977 0.94964 0.92859 0.94181 1.77297 1.01622 1.07178 1.25735 0.90402 0.89247 0.88893 0.79968 0.78464 0.76200 0.94615 0.95757 0.77973 0.93528 0.87934 0.88719 0.89308 0.90082 0.86389 0.79133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 11.44 59.85 0.68 1.20 16 2 N -0.37 -3.72 3.99 -67.54 -0.27 -3.99 16 3 C 0.10 0.94 11.51 -16.46 -0.19 0.75 16 4 C -0.19 -2.42 5.56 -105.08 -0.58 -3.01 16 5 C 0.12 1.72 7.39 -35.24 -0.26 1.46 16 6 O 0.10 1.38 11.17 16.65 0.19 1.57 16 7 N -0.37 -5.29 11.97 30.85 0.37 -4.92 16 8 C 0.03 0.46 11.68 -16.75 -0.20 0.26 16 9 C -0.24 -3.56 6.36 -104.12 -0.66 -4.22 16 10 C 0.60 9.56 7.13 -12.75 -0.09 9.47 16 11 O -0.53 -9.31 11.58 5.21 0.06 -9.25 16 12 N -0.70 -10.85 4.49 -55.04 -0.25 -11.10 16 13 C 0.17 2.79 2.43 -67.93 -0.17 2.63 16 14 H 0.09 1.66 7.33 -51.93 -0.38 1.28 16 15 C 0.15 2.80 5.80 -4.04 -0.02 2.78 16 16 N -0.73 -17.65 5.43 -59.91 -0.33 -17.98 16 17 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C -0.16 -2.26 5.36 -90.62 -0.49 -2.74 16 26 C -0.17 -2.22 10.18 -26.69 -0.27 -2.49 16 27 C -0.18 -2.51 9.74 -26.69 -0.26 -2.77 16 28 C 0.13 1.82 10.39 -16.96 -0.18 1.64 16 29 N -0.30 -4.10 12.50 30.87 0.39 -3.71 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.20 8.14 -51.92 -0.42 -0.22 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.20 2.20 7.77 -52.49 -0.41 1.79 16 35 H 0.40 5.98 7.85 -40.82 -0.32 5.66 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.39 9.96 7.33 -40.82 -0.30 9.66 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.10 1.33 8.11 -51.93 -0.42 0.91 16 41 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.12 1.87 5.01 -51.93 -0.26 1.60 16 45 H 0.19 2.82 7.82 -52.48 -0.41 2.41 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -33.78 386.00 -7.09 -40.87 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -5.85 Total: 14.67 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.93 Total: -2.16 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: 0.64 Total: -68.62 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.25 Total: -7.68 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.78 -7.09 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716616178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.158 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds