Wall clock time and date at job start Wed Apr 1 2020 03:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34456 * 125.76919 * 2 1 4 4 C 1.38071 * 107.39106 * 180.13943 * 3 2 1 5 5 C 1.47353 * 126.41257 * 179.87005 * 4 3 2 6 6 O 1.34255 * 127.19603 * 312.12567 * 5 4 3 7 7 N 1.20737 * 111.95262 * 180.32816 * 6 5 4 8 8 C 1.29874 * 112.81629 * 359.72011 * 7 6 5 9 9 C 1.39932 * 127.19910 * 131.99697 * 5 4 3 10 10 C 1.46913 * 128.39147 * 359.95988 * 9 5 4 11 11 O 1.21672 * 120.00424 * 354.25584 * 10 9 5 12 12 N 1.34776 * 119.99878 * 174.24831 * 10 9 5 13 13 C 1.46500 * 120.00137 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47065 * 35.00497 * 13 12 10 15 15 C 1.53001 * 109.47143 * 155.00568 * 13 12 10 16 16 N 1.46509 * 109.47058 * 304.99870 * 15 13 12 17 17 C 1.36931 * 120.00169 * 179.72493 * 16 15 13 18 18 H 1.08000 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00130 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00209 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00187 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46983 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47117 * 119.99989 * 21 19 17 24 24 H 1.48498 * 109.46823 * 239.99975 * 21 19 17 25 25 C 1.53001 * 109.47185 * 275.00180 * 13 12 10 26 26 C 1.53003 * 117.49852 * 128.74831 * 25 13 12 27 27 C 1.53003 * 117.49658 * 60.09069 * 25 13 12 28 28 C 1.41306 * 107.17869 * 359.60681 * 4 3 2 29 29 N 1.30483 * 108.05302 * 0.24271 * 28 4 3 30 30 H 1.08999 * 109.47380 * 270.32264 * 1 2 3 31 31 H 1.09007 * 109.46501 * 30.32507 * 1 2 3 32 32 H 1.08999 * 109.47071 * 150.31804 * 1 2 3 33 33 H 1.08002 * 126.30938 * 359.97438 * 3 2 1 34 34 H 1.07995 * 126.79596 * 179.97438 * 8 7 6 35 35 H 0.97001 * 120.00063 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.47018 * 185.00526 * 15 13 12 37 37 H 1.08997 * 109.47529 * 64.99882 * 15 13 12 38 38 H 0.96997 * 119.99516 * 0.02562 * 16 15 13 39 39 H 0.96998 * 120.00272 * 179.97438 * 20 19 17 40 40 H 1.08997 * 115.55128 * 274.41594 * 25 13 12 41 41 H 1.09005 * 117.49466 * 359.97438 * 26 25 13 42 42 H 1.08998 * 117.50075 * 145.02088 * 26 25 13 43 43 H 1.09002 * 117.49327 * 214.97506 * 27 25 13 44 44 H 1.08995 * 117.49613 * 359.97245 * 27 25 13 45 45 H 1.08004 * 125.97696 * 180.25896 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0909 0.0000 4 6 3.5612 0.6556 -0.0032 5 6 4.7652 1.5052 -0.0071 6 8 5.0126 2.5587 -0.8017 7 7 6.0905 3.0526 -0.5738 8 6 6.7305 2.4468 0.3802 9 6 5.8886 1.3843 0.8184 10 6 6.1413 0.3969 1.8764 11 8 5.2700 -0.3906 2.1945 12 7 7.3384 0.3632 2.4947 13 6 7.5907 -0.6218 3.5495 14 1 7.0713 -1.5501 3.3114 15 6 9.0939 -0.8893 3.6485 16 7 9.6053 -1.2942 2.3366 17 6 10.9347 -1.5821 2.1791 18 1 11.6062 -1.5110 3.0220 19 6 11.4193 -1.9652 0.9361 20 7 10.6010 -2.0523 -0.0911 21 14 13.2328 -2.3585 0.7213 22 1 13.9337 -2.1862 2.0190 23 1 13.3836 -3.7617 0.2592 24 1 13.8227 -1.4398 -0.2852 25 6 7.0800 -0.0799 4.8861 26 6 6.1540 -0.9805 5.7061 27 6 5.5897 0.2501 4.9915 28 6 3.5317 -0.7571 0.0041 29 7 2.2829 -1.1354 0.0059 30 1 -0.3634 0.0058 1.0276 31 1 -0.3632 0.8871 -0.5189 32 1 -0.3633 -0.8928 -0.5089 33 1 1.9186 2.1186 -0.0004 34 1 7.7078 2.6984 0.7649 35 1 8.0330 0.9911 2.2414 36 1 9.2743 -1.6858 4.3704 37 1 9.6038 0.0177 3.9731 38 1 9.0029 -1.3542 1.5787 39 1 10.9397 -2.3196 -0.9598 40 1 7.7763 0.5564 5.4323 41 1 5.9082 -1.9588 5.2930 42 1 6.2408 -0.9363 6.7917 43 1 5.3057 1.1033 5.6075 44 1 4.9733 0.0816 4.1086 45 1 4.3922 -1.4097 0.0078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716616178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:31 Heat of formation + Delta-G solvation = 129.592661 kcal Electronic energy + Delta-G solvation = -30256.116788 eV Core-core repulsion = 26086.660703 eV Total energy + Delta-G solvation = -4169.456085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -45.90802 -42.14015 -40.92895 -38.36790 -36.59454 -35.22157 -34.87273 -34.50277 -33.26389 -32.89547 -30.60287 -29.68274 -27.69229 -26.24434 -25.48080 -23.98312 -23.25224 -23.02608 -22.39715 -21.87180 -21.27589 -21.23349 -19.46405 -19.04739 -18.64030 -18.21082 -17.32027 -16.91279 -16.65624 -16.50214 -16.39361 -15.85444 -15.79025 -15.40522 -15.11725 -14.95948 -14.79592 -14.38304 -14.28859 -14.03383 -13.69348 -13.61172 -13.26699 -13.16557 -12.83334 -12.71015 -12.67747 -12.44392 -12.28669 -12.02044 -11.91307 -11.83102 -11.50797 -11.26457 -11.09354 -10.97878 -10.85915 -10.81692 -10.49338 -9.90564 -9.30835 -8.98894 -7.92301 -5.21527 -0.18070 0.81696 0.85628 1.38798 1.49079 1.49778 1.59198 1.59480 1.91603 2.28458 2.31271 2.57255 3.03359 3.27392 3.37957 3.42574 3.61047 3.65627 3.85449 3.89837 3.98811 4.11196 4.16168 4.20458 4.24604 4.37987 4.47490 4.49892 4.51297 4.67028 4.68609 4.70302 4.76178 4.84041 4.85388 4.94059 5.07615 5.15349 5.32647 5.38597 5.41142 5.53111 5.61091 5.95655 6.28047 6.56201 6.59560 7.12348 7.27641 7.35976 8.09402 8.33203 9.30596 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.003252 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.585234 B = 8607.717330 C = 9639.800249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.360 5.360 3 C 0.123 3.877 4 C -0.221 4.221 5 C 0.138 3.862 6 O 0.104 5.896 7 N -0.382 5.382 8 C 0.039 3.961 9 C -0.267 4.267 10 C 0.599 3.401 11 O -0.552 6.552 12 N -0.696 5.696 13 C 0.183 3.817 14 H 0.062 0.938 15 C 0.150 3.850 16 N -0.742 5.742 17 C -0.239 4.239 18 H 0.079 0.921 19 C -0.073 4.073 20 N -0.967 5.967 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.299 1.299 24 H -0.295 1.295 25 C -0.163 4.163 26 C -0.164 4.164 27 C -0.181 4.181 28 C 0.110 3.890 29 N -0.329 5.329 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.094 0.906 33 H 0.230 0.770 34 H 0.218 0.782 35 H 0.407 0.593 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.374 0.626 39 H 0.249 0.751 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.916 11.474 4.993 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.138 5.138 3 C -0.029 4.029 4 C -0.234 4.234 5 C 0.071 3.929 6 O 0.045 5.955 7 N -0.088 5.088 8 C -0.141 4.141 9 C -0.274 4.274 10 C 0.387 3.613 11 O -0.432 6.432 12 N -0.346 5.346 13 C 0.078 3.922 14 H 0.080 0.920 15 C 0.023 3.977 16 N -0.385 5.385 17 C -0.371 4.371 18 H 0.097 0.903 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.800 3.200 22 H -0.188 1.188 23 H -0.226 1.226 24 H -0.222 1.222 25 C -0.183 4.183 26 C -0.202 4.202 27 C -0.218 4.218 28 C -0.077 4.077 29 N -0.150 5.150 30 H 0.109 0.891 31 H 0.146 0.854 32 H 0.112 0.888 33 H 0.246 0.754 34 H 0.234 0.766 35 H 0.242 0.758 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.207 0.793 39 H 0.057 0.943 40 H 0.139 0.861 41 H 0.100 0.900 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -22.065 10.910 4.523 25.027 hybrid contribution 2.144 -0.281 -0.276 2.180 sum -19.920 10.629 4.247 22.975 Atomic orbital electron populations 1.22412 0.70637 1.06813 1.05256 1.48730 1.08615 1.02985 1.53501 1.23537 0.88554 0.95305 0.95509 1.17776 0.89387 0.91301 1.24936 1.22147 0.94098 0.88002 0.88639 1.84853 1.28139 1.35016 1.47489 1.73492 0.94800 1.21770 1.18759 1.25327 1.02212 0.92729 0.93809 1.21370 0.97795 1.03362 1.04914 1.16761 0.82360 0.82197 0.80016 1.90731 1.45131 1.41691 1.65686 1.45678 1.14309 1.36743 1.37853 1.20552 0.95348 0.90703 0.85554 0.91971 1.21051 0.90590 0.98066 0.87980 1.42521 1.06704 1.82134 1.07175 1.19640 0.86338 1.36436 0.94672 0.90271 1.25514 1.01693 1.03454 0.95909 1.69833 1.35305 1.56065 1.00554 0.85123 0.80562 0.76614 0.77742 1.18839 1.22613 1.22217 1.22561 0.93899 1.04824 0.96985 1.22970 1.02972 0.94944 0.99301 1.23177 0.95509 0.99561 1.03514 1.23746 0.94898 0.93617 0.95429 1.77204 1.01752 1.09327 1.26741 0.89089 0.85413 0.88756 0.75377 0.76562 0.75767 0.94467 0.94042 0.79333 0.94252 0.86100 0.90042 0.86771 0.88108 0.88756 0.81357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.44 127.77 1.46 2.12 16 2 N -0.36 -6.70 3.99 -367.59 -1.47 -8.17 16 3 C 0.12 2.14 11.51 84.25 0.97 3.11 16 4 C -0.22 -5.71 5.56 -20.16 -0.11 -5.82 16 5 C 0.14 3.83 7.39 25.08 0.19 4.02 16 6 O 0.10 2.79 11.17 69.81 0.78 3.57 16 7 N -0.38 -10.80 11.97 -56.83 -0.68 -11.48 16 8 C 0.04 1.04 11.68 86.04 1.01 2.05 16 9 C -0.27 -7.96 6.36 -19.54 -0.12 -8.08 16 10 C 0.60 19.75 7.13 86.51 0.62 20.37 16 11 O -0.55 -20.25 11.58 -4.26 -0.05 -20.30 16 12 N -0.70 -21.97 4.49 -446.27 -2.01 -23.98 16 13 C 0.18 6.00 2.43 44.99 0.11 6.10 16 14 H 0.06 2.39 7.33 -2.39 -0.02 2.38 16 15 C 0.15 5.59 5.80 86.38 0.50 6.09 16 16 N -0.74 -36.11 5.43 -343.44 -1.87 -37.98 16 17 C -0.24 -12.89 9.99 84.03 0.84 -12.05 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 20 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 21 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 C -0.16 -4.30 5.36 -10.79 -0.06 -4.36 16 26 C -0.16 -4.04 10.18 30.62 0.31 -3.73 16 27 C -0.18 -4.69 9.74 30.62 0.30 -4.39 16 28 C 0.11 3.31 10.39 85.65 0.89 4.20 16 29 N -0.33 -9.22 12.50 -56.24 -0.70 -9.92 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.13 0.02 8.14 -2.38 -0.02 0.00 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.23 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.22 4.70 7.77 -2.91 -0.02 4.68 16 35 H 0.41 12.09 7.85 -92.71 -0.73 11.37 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.37 19.88 7.33 -92.71 -0.68 19.20 16 39 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.12 2.79 8.11 -2.39 -0.02 2.77 16 41 H 0.08 2.22 8.05 -2.38 -0.02 2.20 16 42 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.09 2.99 5.01 -2.39 -0.01 2.98 16 45 H 0.17 5.62 7.82 -2.91 -0.02 5.59 16 Total: -1.00 -74.84 386.00 3.33 -71.51 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -0.35 Total: 41.59 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 7.36 Total: 5.96 kcal Atomic # 7 Polarization: -143.65 SS G_CDS: -6.44 Total: -150.09 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.73 Total: -16.74 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -74.84 3.33 -71.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716616178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.106 kcal (2) G-P(sol) polarization free energy of solvation -74.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds