Wall clock time and date at job start Wed Apr 1 2020 03:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40231 * 126.65457 * 2 1 4 4 N 1.28646 * 109.50772 * 179.97438 * 3 2 1 5 5 C 1.35435 * 110.12761 * 0.02562 * 4 3 2 6 6 C 1.39796 * 133.04230 * 180.29479 * 5 4 3 7 7 C 1.38887 * 119.55814 * 180.14829 * 6 5 4 8 8 C 1.47715 * 119.86272 * 179.78972 * 7 6 5 9 9 O 1.21567 * 120.00269 * 326.27113 * 8 7 6 10 10 N 1.34772 * 119.99605 * 146.26546 * 8 7 6 11 11 C 1.47155 * 120.98387 * 354.82493 * 10 8 7 12 12 C 1.53292 * 108.38775 * 230.55523 * 11 10 8 13 13 O 1.42968 * 109.22303 * 307.70064 * 12 11 10 14 14 C 1.42963 * 114.16515 * 62.57930 * 13 12 11 15 15 H 1.09005 * 109.55413 * 57.37270 * 14 13 12 16 16 C 1.53003 * 109.50955 * 177.49205 * 14 13 12 17 17 N 1.46495 * 109.47397 * 299.74913 * 16 14 13 18 18 C 1.36936 * 119.99926 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00260 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99721 * 179.72089 * 18 17 16 21 21 N 1.31617 * 120.00051 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99700 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47471 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47011 * 120.00232 * 22 20 18 25 25 H 1.48502 * 109.47330 * 240.00105 * 22 20 18 26 26 C 1.47151 * 120.98138 * 174.85092 * 10 8 7 27 27 C 1.40253 * 120.27191 * 359.52194 * 7 6 5 28 28 C 1.36265 * 120.45424 * 0.24827 * 27 7 6 29 29 C 1.37263 * 126.65637 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46819 * 269.99723 * 1 2 3 31 31 H 1.09004 * 109.47319 * 29.99472 * 1 2 3 32 32 H 1.08994 * 109.47202 * 149.99933 * 1 2 3 33 33 H 1.07998 * 120.21982 * 359.94132 * 6 5 4 34 34 H 1.08995 * 109.67918 * 350.28168 * 11 10 8 35 35 H 1.09003 * 109.68051 * 110.79645 * 11 10 8 36 36 H 1.09004 * 109.51229 * 67.62436 * 12 11 10 37 37 H 1.09004 * 109.51509 * 187.77627 * 12 11 10 38 38 H 1.08996 * 109.46708 * 179.74380 * 16 14 13 39 39 H 1.09000 * 109.46476 * 59.74916 * 16 14 13 40 40 H 0.96999 * 119.99907 * 359.97438 * 17 16 14 41 41 H 0.97004 * 120.00005 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.68329 * 9.72057 * 26 10 8 43 43 H 1.08998 * 109.68368 * 249.16310 * 26 10 8 44 44 H 1.08001 * 119.77473 * 180.27283 * 27 7 6 45 45 H 1.08003 * 119.92636 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1250 0.0000 4 7 3.5314 0.7457 0.0005 5 6 3.6019 -0.6068 0.0004 6 6 4.6718 -1.5065 0.0060 7 6 4.4186 -2.8721 0.0009 8 6 5.5441 -3.8288 0.0021 9 8 6.5765 -3.5536 -0.5779 10 7 5.4264 -5.0068 0.6462 11 6 4.2322 -5.3154 1.4487 12 6 4.6892 -5.7967 2.8305 13 8 5.6374 -6.8547 2.6705 14 6 6.8358 -6.4691 1.9930 15 1 7.3085 -5.6453 2.5280 16 6 7.7959 -7.6590 1.9357 17 7 8.1270 -8.0853 3.2976 18 6 8.9767 -9.1404 3.4972 19 1 9.4025 -9.6586 2.6507 20 6 9.2950 -9.5407 4.7877 21 7 8.7796 -8.9064 5.8194 22 14 10.4535 -10.9805 5.0600 23 1 10.8917 -11.5185 3.7471 24 1 11.6395 -10.5231 5.8278 25 1 9.7509 -12.0442 5.8217 26 6 6.4887 -6.0221 0.5683 27 6 3.0988 -3.3465 0.0002 28 6 2.0515 -2.4747 -0.0005 29 6 2.2845 -1.1012 -0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5138 33 1 5.6884 -1.1422 0.0109 34 1 3.6204 -4.4197 1.5558 35 1 3.6535 -6.0988 0.9593 36 1 5.1532 -4.9703 3.3688 37 1 3.8289 -6.1608 3.3922 38 1 8.7074 -7.3655 1.4151 39 1 7.3219 -8.4828 1.4022 40 1 7.7449 -7.6197 4.0579 41 1 9.0023 -9.1859 6.7212 42 1 7.3712 -5.5945 0.0925 43 1 6.1376 -6.8772 -0.0093 44 1 2.9111 -4.4101 0.0007 45 1 1.0385 -2.8494 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717174654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:00 Heat of formation + Delta-G solvation = 75.538832 kcal Electronic energy + Delta-G solvation = -29507.209058 eV Core-core repulsion = 25335.409023 eV Total energy + Delta-G solvation = -4171.800035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.58414 -40.69400 -38.62766 -37.51828 -35.25129 -35.13832 -34.42590 -32.35305 -31.31311 -31.04961 -30.06327 -28.35867 -27.92750 -26.06515 -24.41281 -24.04312 -23.30475 -22.32082 -21.70340 -20.93945 -19.91131 -18.69271 -17.80293 -17.12703 -16.81145 -16.67837 -16.49460 -16.17807 -15.69736 -15.25619 -15.19906 -14.77627 -14.50816 -14.44578 -14.13777 -14.09715 -13.68758 -13.45381 -13.32066 -13.12872 -12.81098 -12.69863 -12.66780 -12.42533 -12.27452 -11.87838 -11.62313 -11.29042 -11.21050 -11.03232 -10.89077 -10.80245 -10.51821 -10.15630 -9.97114 -9.91238 -9.68340 -9.35959 -8.89809 -8.86091 -8.59283 -6.87927 -5.71953 -3.00532 -0.05410 0.41958 1.54145 1.67259 2.40186 2.60025 3.19618 3.46413 3.51726 3.53146 3.54208 3.83363 3.91222 3.96240 4.12982 4.34885 4.46808 4.52631 4.57858 4.62156 4.71162 4.76351 4.81654 4.86859 5.01625 5.09934 5.25976 5.28860 5.39062 5.42960 5.56642 5.60862 5.63218 5.65765 5.67469 5.84963 5.90092 5.93309 6.05363 6.23968 6.28504 6.56153 6.69163 7.10675 7.43540 7.48668 7.73525 7.87943 8.46187 9.58074 10.15335 10.51188 11.50891 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.001972 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.120610 B =14192.396963 C =14453.872277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.398 5.398 3 N -0.007 5.007 4 N -0.207 5.207 5 C -0.026 4.026 6 C 0.033 3.967 7 C -0.146 4.146 8 C 0.565 3.435 9 O -0.529 6.529 10 N -0.606 5.606 11 C 0.058 3.942 12 C 0.045 3.955 13 O -0.356 6.356 14 C 0.073 3.927 15 H 0.064 0.936 16 C 0.163 3.837 17 N -0.726 5.726 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.086 3.914 27 C -0.047 4.047 28 C -0.127 4.127 29 C 0.104 3.896 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.036 0.964 39 H 0.029 0.971 40 H 0.388 0.612 41 H 0.254 0.746 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.152 0.848 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.281 16.157 -13.296 30.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.192 5.192 3 N 0.013 4.987 4 N -0.086 5.086 5 C -0.150 4.150 6 C 0.010 3.990 7 C -0.152 4.152 8 C 0.354 3.646 9 O -0.406 6.406 10 N -0.340 5.340 11 C -0.065 4.065 12 C -0.033 4.033 13 O -0.274 6.274 14 C 0.014 3.986 15 H 0.082 0.918 16 C 0.035 3.965 17 N -0.370 5.370 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.037 4.037 27 C -0.069 4.069 28 C -0.149 4.149 29 C -0.018 4.018 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.169 0.831 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.222 0.778 41 H 0.064 0.936 42 H 0.122 0.878 43 H 0.099 0.901 44 H 0.169 0.831 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.692 17.539 -13.580 31.025 hybrid contribution 0.064 -1.350 0.458 1.427 sum -21.628 16.189 -13.122 30.034 Atomic orbital electron populations 1.22053 0.72544 1.05386 1.04349 1.50151 1.07993 1.03475 1.57557 1.81673 0.94017 1.07504 1.15494 1.74899 1.11198 1.10345 1.12119 1.19767 0.93022 0.90215 1.11985 1.20522 0.98495 0.89728 0.90248 1.19618 0.93739 0.93239 1.08624 1.18041 0.86790 0.80885 0.78906 1.90819 1.29406 1.75885 1.44475 1.48007 1.20525 1.16230 1.49226 1.23037 0.87934 1.02091 0.93419 1.22943 0.94032 0.91937 0.94428 1.88175 1.27661 1.33840 1.77682 1.22811 0.86268 0.99127 0.90372 0.91780 1.20628 0.93377 0.92301 0.90188 1.42214 1.55725 1.38146 1.00952 1.19275 1.18887 1.06735 0.92043 0.91067 1.24748 1.00972 0.99830 0.95518 1.69687 1.47972 1.42780 0.97579 0.86106 0.80310 0.82104 0.77602 1.20543 1.21929 1.21904 1.22406 0.91737 0.90752 0.98768 1.21232 0.90643 1.00777 0.94215 1.19711 1.00548 0.87939 1.06709 1.19493 0.90917 0.90629 1.00773 0.89713 0.88320 0.88829 0.83079 0.88094 0.89929 0.92722 0.87676 0.94621 0.95343 0.77830 0.93627 0.87753 0.90085 0.83065 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.25 11.52 59.85 0.69 0.94 16 2 N -0.40 -3.08 4.11 -65.43 -0.27 -3.35 16 3 N -0.01 -0.07 13.72 60.35 0.83 0.76 16 4 N -0.21 -2.52 12.40 32.15 0.40 -2.12 16 5 C -0.03 -0.28 7.26 -84.76 -0.62 -0.90 16 6 C 0.03 0.35 9.65 -38.76 -0.37 -0.02 16 7 C -0.15 -1.43 5.35 -105.03 -0.56 -1.99 16 8 C 0.57 7.11 7.40 -12.39 -0.09 7.02 16 9 O -0.53 -8.52 16.24 5.31 0.09 -8.44 16 10 N -0.61 -7.11 3.02 -173.44 -0.52 -7.63 16 11 C 0.06 0.51 4.90 -3.53 -0.02 0.49 16 12 C 0.04 0.52 6.98 37.31 0.26 0.78 16 13 O -0.36 -5.93 10.14 -35.23 -0.36 -6.29 16 14 C 0.07 1.21 2.86 -26.58 -0.08 1.13 16 15 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 16 C 0.16 3.29 5.95 -4.04 -0.02 3.27 16 17 N -0.73 -18.79 5.50 -59.91 -0.33 -19.12 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 22 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 C 0.09 1.16 5.94 -3.53 -0.02 1.14 16 27 C -0.05 -0.31 7.30 -39.53 -0.29 -0.60 16 28 C -0.13 -0.73 9.97 -39.89 -0.40 -1.13 16 29 C 0.10 0.88 6.93 -84.10 -0.58 0.29 16 30 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.15 1.61 7.96 -52.49 -0.42 1.19 16 34 H 0.10 0.65 4.56 -51.93 -0.24 0.42 16 35 H 0.08 0.60 7.94 -51.93 -0.41 0.19 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.39 10.69 7.55 -40.82 -0.31 10.38 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.10 1.48 7.06 -51.93 -0.37 1.12 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.15 0.70 5.74 -52.49 -0.30 0.40 16 45 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -37.16 374.84 -6.98 -44.14 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.82 Total: 3.70 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.35 Total: 2.96 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.83 Total: -59.34 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.27 Total: -14.73 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.16 -6.98 -44.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717174654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.683 kcal (2) G-P(sol) polarization free energy of solvation -37.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds