Wall clock time and date at job start Wed Apr 1 2020 03:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40231 * 126.65457 * 2 1 4 4 N 1.28646 * 109.50772 * 179.97438 * 3 2 1 5 5 C 1.35435 * 110.12761 * 0.02562 * 4 3 2 6 6 C 1.39796 * 133.04230 * 180.29479 * 5 4 3 7 7 C 1.38887 * 119.55814 * 180.14829 * 6 5 4 8 8 C 1.47715 * 119.86272 * 179.78972 * 7 6 5 9 9 O 1.21567 * 120.00269 * 326.27113 * 8 7 6 10 10 N 1.34772 * 119.99605 * 146.26546 * 8 7 6 11 11 C 1.47155 * 120.98387 * 354.82493 * 10 8 7 12 12 C 1.53292 * 108.38775 * 230.55523 * 11 10 8 13 13 O 1.42968 * 109.22303 * 307.70064 * 12 11 10 14 14 C 1.42963 * 114.16515 * 62.57930 * 13 12 11 15 15 H 1.09005 * 109.55413 * 57.37270 * 14 13 12 16 16 C 1.53003 * 109.50955 * 177.49205 * 14 13 12 17 17 N 1.46495 * 109.47397 * 299.74913 * 16 14 13 18 18 C 1.36936 * 119.99926 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00260 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99721 * 179.72089 * 18 17 16 21 21 N 1.31617 * 120.00051 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99700 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47471 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47011 * 120.00232 * 22 20 18 25 25 H 1.48502 * 109.47330 * 240.00105 * 22 20 18 26 26 C 1.47151 * 120.98138 * 174.85092 * 10 8 7 27 27 C 1.40253 * 120.27191 * 359.52194 * 7 6 5 28 28 C 1.36265 * 120.45424 * 0.24827 * 27 7 6 29 29 C 1.37263 * 126.65637 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46819 * 269.99723 * 1 2 3 31 31 H 1.09004 * 109.47319 * 29.99472 * 1 2 3 32 32 H 1.08994 * 109.47202 * 149.99933 * 1 2 3 33 33 H 1.07998 * 120.21982 * 359.94132 * 6 5 4 34 34 H 1.08995 * 109.67918 * 350.28168 * 11 10 8 35 35 H 1.09003 * 109.68051 * 110.79645 * 11 10 8 36 36 H 1.09004 * 109.51229 * 67.62436 * 12 11 10 37 37 H 1.09004 * 109.51509 * 187.77627 * 12 11 10 38 38 H 1.08996 * 109.46708 * 179.74380 * 16 14 13 39 39 H 1.09000 * 109.46476 * 59.74916 * 16 14 13 40 40 H 0.96999 * 119.99907 * 359.97438 * 17 16 14 41 41 H 0.97004 * 120.00005 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.68329 * 9.72057 * 26 10 8 43 43 H 1.08998 * 109.68368 * 249.16310 * 26 10 8 44 44 H 1.08001 * 119.77473 * 180.27283 * 27 7 6 45 45 H 1.08003 * 119.92636 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1250 0.0000 4 7 3.5314 0.7457 0.0005 5 6 3.6019 -0.6068 0.0004 6 6 4.6718 -1.5065 0.0060 7 6 4.4186 -2.8721 0.0009 8 6 5.5441 -3.8288 0.0021 9 8 6.5765 -3.5536 -0.5779 10 7 5.4264 -5.0068 0.6462 11 6 4.2322 -5.3154 1.4487 12 6 4.6892 -5.7967 2.8305 13 8 5.6374 -6.8547 2.6705 14 6 6.8358 -6.4691 1.9930 15 1 7.3085 -5.6453 2.5280 16 6 7.7959 -7.6590 1.9357 17 7 8.1270 -8.0853 3.2976 18 6 8.9767 -9.1404 3.4972 19 1 9.4025 -9.6586 2.6507 20 6 9.2950 -9.5407 4.7877 21 7 8.7796 -8.9064 5.8194 22 14 10.4535 -10.9805 5.0600 23 1 10.8917 -11.5185 3.7471 24 1 11.6395 -10.5231 5.8278 25 1 9.7509 -12.0442 5.8217 26 6 6.4887 -6.0221 0.5683 27 6 3.0988 -3.3465 0.0002 28 6 2.0515 -2.4747 -0.0005 29 6 2.2845 -1.1012 -0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5138 33 1 5.6884 -1.1422 0.0109 34 1 3.6204 -4.4197 1.5558 35 1 3.6535 -6.0988 0.9593 36 1 5.1532 -4.9703 3.3688 37 1 3.8289 -6.1608 3.3922 38 1 8.7074 -7.3655 1.4151 39 1 7.3219 -8.4828 1.4022 40 1 7.7449 -7.6197 4.0579 41 1 9.0023 -9.1859 6.7212 42 1 7.3712 -5.5945 0.0925 43 1 6.1376 -6.8772 -0.0093 44 1 2.9111 -4.4101 0.0007 45 1 1.0385 -2.8494 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717174654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:59 Heat of formation + Delta-G solvation = 46.962464 kcal Electronic energy + Delta-G solvation = -29508.448222 eV Core-core repulsion = 25335.409023 eV Total energy + Delta-G solvation = -4173.039200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.24515 -41.65449 -39.70685 -38.30553 -36.66778 -35.83794 -35.74787 -33.93963 -32.25174 -31.90578 -31.29968 -29.37798 -28.46338 -27.46402 -25.56315 -24.86291 -24.50225 -23.58857 -22.31970 -22.25193 -20.79987 -19.50287 -19.15594 -18.36646 -17.86814 -17.45145 -17.22969 -17.14155 -16.86250 -16.53811 -16.11139 -16.03949 -15.57473 -15.32490 -15.22954 -15.01292 -14.58695 -14.48208 -14.34378 -14.10495 -13.89456 -13.80195 -13.53964 -13.45042 -13.18918 -12.91240 -12.80120 -12.61186 -12.58242 -12.21926 -12.00323 -11.95782 -11.84212 -11.76129 -11.61183 -11.22594 -11.00033 -10.94212 -10.04892 -9.68059 -9.43913 -8.98758 -7.92717 -5.21873 -0.71354 -0.26083 1.01765 1.07088 1.48552 1.50187 1.50485 1.60498 1.70490 2.47685 2.57677 2.78263 2.87926 3.23074 3.41242 3.41762 3.48216 3.58947 3.76138 3.89523 3.93215 3.98526 4.08937 4.15449 4.26805 4.35987 4.39235 4.43165 4.45649 4.54151 4.67753 4.68435 4.72382 4.77721 4.82754 4.88112 4.96701 4.99490 5.05056 5.12262 5.21754 5.35160 5.50633 5.58455 6.19001 6.25380 6.30217 6.79185 6.91931 7.35138 8.09820 8.34019 9.31240 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.001972 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.120610 B =14192.396963 C =14453.872277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.384 5.384 3 N -0.030 5.030 4 N -0.247 5.247 5 C -0.048 4.048 6 C 0.011 3.989 7 C -0.144 4.144 8 C 0.564 3.436 9 O -0.575 6.575 10 N -0.605 5.605 11 C 0.062 3.938 12 C 0.035 3.965 13 O -0.385 6.385 14 C 0.087 3.913 15 H 0.043 0.957 16 C 0.159 3.841 17 N -0.740 5.740 18 C -0.244 4.244 19 H 0.079 0.921 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.292 1.292 26 C 0.096 3.904 27 C -0.045 4.045 28 C -0.099 4.099 29 C 0.100 3.900 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.043 0.957 37 H 0.132 0.868 38 H 0.041 0.959 39 H 0.035 0.965 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.183 0.817 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.794 14.819 -14.360 33.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.178 5.178 3 N -0.010 5.010 4 N -0.125 5.125 5 C -0.173 4.173 6 C -0.012 4.012 7 C -0.151 4.151 8 C 0.354 3.646 9 O -0.455 6.455 10 N -0.337 5.337 11 C -0.059 4.059 12 C -0.042 4.042 13 O -0.303 6.303 14 C 0.028 3.972 15 H 0.061 0.939 16 C 0.032 3.968 17 N -0.383 5.383 18 C -0.376 4.376 19 H 0.097 0.903 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.806 3.194 23 H -0.188 1.188 24 H -0.222 1.222 25 H -0.219 1.219 26 C -0.027 4.027 27 C -0.067 4.067 28 C -0.121 4.121 29 C -0.023 4.023 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.132 0.868 36 H 0.061 0.939 37 H 0.150 0.850 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.207 0.793 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.200 0.800 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -25.254 16.225 -14.680 33.414 hybrid contribution 1.016 -0.879 0.772 1.550 sum -24.238 15.346 -13.908 31.881 Atomic orbital electron populations 1.22600 0.69418 1.07493 1.06147 1.50545 1.09492 1.02437 1.55365 1.81561 0.94166 1.09067 1.16244 1.74861 1.12169 1.11553 1.13961 1.19950 0.94461 0.89989 1.12870 1.20400 0.97961 0.90519 0.92309 1.19467 0.94399 0.91951 1.09237 1.18479 0.86905 0.81087 0.78126 1.90795 1.31407 1.76755 1.46554 1.48062 1.20906 1.15534 1.49172 1.23291 0.86987 1.04332 0.91331 1.23279 0.93642 0.90673 0.96647 1.88111 1.28056 1.36143 1.78024 1.22455 0.86084 0.96572 0.92127 0.93886 1.20788 0.94645 0.93874 0.87458 1.42413 1.55432 1.37685 1.02768 1.19716 1.18550 1.06946 0.92371 0.90282 1.25621 1.03188 1.02896 0.95396 1.69849 1.49829 1.44651 0.97761 0.85022 0.77872 0.78669 0.77875 1.18840 1.22177 1.21945 1.22149 0.92371 0.91737 0.96485 1.21495 0.88910 1.02449 0.93840 1.20204 1.02536 0.86044 1.03277 1.19841 0.89876 0.91921 1.00663 0.87959 0.87513 0.85555 0.85039 0.85129 0.86822 0.93902 0.85012 0.94084 0.94689 0.79329 0.94066 0.88961 0.88340 0.79956 0.79313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.09 11.52 127.77 1.47 1.57 16 2 N -0.38 -5.02 4.11 -360.92 -1.48 -6.50 16 3 N -0.03 -0.65 13.72 37.02 0.51 -0.15 16 4 N -0.25 -6.30 12.40 -52.20 -0.65 -6.94 16 5 C -0.05 -1.04 7.26 39.57 0.29 -0.76 16 6 C 0.01 0.25 9.65 22.80 0.22 0.47 16 7 C -0.14 -2.65 5.35 -20.13 -0.11 -2.75 16 8 C 0.56 13.92 7.40 86.75 0.64 14.57 16 9 O -0.57 -19.26 16.24 -3.93 -0.06 -19.33 16 10 N -0.60 -13.19 3.02 -820.92 -2.48 -15.67 16 11 C 0.06 0.86 4.90 86.35 0.42 1.28 16 12 C 0.03 0.73 6.98 72.08 0.50 1.23 16 13 O -0.38 -12.54 10.14 -148.98 -1.51 -14.05 16 14 C 0.09 2.89 2.86 30.69 0.09 2.97 16 15 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 16 C 0.16 6.46 5.95 86.38 0.51 6.97 16 17 N -0.74 -38.98 5.50 -343.46 -1.89 -40.87 16 18 C -0.24 -13.93 9.99 84.03 0.84 -13.09 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 21 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 22 Si 0.98 46.82 29.55 68.60 2.03 48.84 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 C 0.10 2.52 5.94 86.35 0.51 3.04 16 27 C -0.05 -0.41 7.30 22.30 0.16 -0.25 16 28 C -0.10 -0.64 9.97 22.07 0.22 -0.42 16 29 C 0.10 1.42 6.93 39.16 0.27 1.69 16 30 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.13 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H 0.13 3.23 7.96 -2.91 -0.02 3.21 16 34 H 0.13 1.08 4.56 -2.39 -0.01 1.07 16 35 H 0.11 1.01 7.94 -2.39 -0.02 0.99 16 36 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.13 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.37 21.32 7.55 -92.71 -0.70 20.62 16 41 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 42 H 0.09 2.67 7.06 -2.39 -0.02 2.65 16 43 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.18 0.54 5.74 -2.91 -0.02 0.52 16 45 H 0.19 -0.58 8.06 -2.91 -0.02 -0.60 16 Total: -1.00 -86.08 374.84 1.60 -84.47 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.34 Total: 18.28 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 6.52 Total: 12.36 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -5.71 Total: -130.58 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.57 Total: -33.38 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -86.08 1.60 -84.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717174654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.433 kcal (2) G-P(sol) polarization free energy of solvation -86.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds