Wall clock time and date at job start Wed Apr 1 2020 04:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99831 * 2 1 4 4 H 1.08002 * 119.99807 * 156.77255 * 3 2 1 5 5 C 1.38807 * 120.00177 * 337.04056 * 3 2 1 6 6 N 1.31625 * 120.00157 * 358.98048 * 5 3 2 7 7 Si 1.86799 * 120.00286 * 178.97098 * 5 3 2 8 8 H 1.48491 * 109.47153 * 60.00281 * 7 5 3 9 9 H 1.48499 * 109.47434 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47070 * 300.00394 * 7 5 3 11 11 C 1.46499 * 119.99874 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47358 * 277.73104 * 11 2 1 13 13 H 1.08997 * 109.87102 * 66.35642 * 12 11 2 14 14 C 1.54320 * 109.88528 * 187.53176 * 12 11 2 15 15 C 1.55150 * 102.94658 * 141.61160 * 14 12 11 16 16 C 1.54919 * 101.57849 * 324.50057 * 15 14 12 17 17 N 1.47022 * 109.88214 * 305.33998 * 12 11 2 18 18 C 1.34777 * 125.64591 * 61.60379 * 17 12 11 19 19 O 1.21637 * 120.00133 * 6.60716 * 18 17 12 20 20 C 1.47208 * 119.99782 * 186.60415 * 18 17 12 21 21 C 1.38842 * 120.90029 * 9.83402 * 20 18 17 22 22 C 1.39931 * 119.42901 * 179.97438 * 21 20 18 23 23 C 1.35014 * 121.27057 * 359.97438 * 22 21 20 24 24 N 1.36253 * 121.58328 * 0.02562 * 23 22 21 25 25 C 1.36370 * 133.87922 * 179.97438 * 24 23 22 26 26 O 1.35710 * 126.33665 * 0.02562 * 25 24 23 27 27 N 1.31103 * 107.32977 * 180.02562 * 25 24 23 28 28 N 1.28699 * 110.31578 * 0.02562 * 27 25 24 29 29 C 1.31490 * 109.66778 * 359.71355 * 28 27 25 30 30 H 1.09001 * 109.46979 * 92.81333 * 1 2 3 31 31 H 1.08999 * 109.47121 * 212.80905 * 1 2 3 32 32 H 1.08997 * 109.47049 * 332.81188 * 1 2 3 33 33 H 0.96991 * 120.00178 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.47289 * 37.73475 * 11 2 1 35 35 H 1.09001 * 109.47141 * 157.73273 * 11 2 1 36 36 H 1.09003 * 110.72290 * 259.98006 * 14 12 11 37 37 H 1.09004 * 110.71756 * 23.24573 * 14 12 11 38 38 H 1.09000 * 111.00940 * 206.42725 * 15 14 12 39 39 H 1.08999 * 111.00618 * 82.57175 * 15 14 12 40 40 H 1.09005 * 110.36025 * 278.16658 * 16 15 14 41 41 H 1.08994 * 110.36494 * 155.85035 * 16 15 14 42 42 H 1.07999 * 120.28660 * 0.02862 * 21 20 18 43 43 H 1.08004 * 119.36558 * 180.02562 * 22 21 20 44 44 H 1.08002 * 119.20794 * 180.02562 * 23 22 21 45 45 H 0.96696 * 114.00104 * 89.99361 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1640 1.2238 0.3689 5 6 1.5381 2.3404 -0.4689 6 7 0.3070 2.2914 -0.9322 7 14 2.4620 3.9637 -0.4422 8 1 3.6904 3.8477 -1.2683 9 1 1.5945 5.0361 -0.9923 10 1 2.8353 4.2978 0.9557 11 6 2.1975 -1.2687 0.0006 12 6 2.2845 -1.8069 1.4302 13 1 1.2899 -2.0759 1.7859 14 6 3.2116 -3.0398 1.4715 15 6 3.9705 -2.8593 2.8126 16 6 4.1273 -1.3194 2.8763 17 7 2.8727 -0.7887 2.3128 18 6 2.3516 0.4285 2.5643 19 8 1.2495 0.7181 2.1387 20 6 3.1162 1.4076 3.3542 21 6 4.4473 1.1798 3.6767 22 6 5.1451 2.1316 4.4286 23 6 4.5491 3.2686 4.8468 24 7 3.2456 3.5393 4.5568 25 6 2.4099 4.5786 4.8420 26 8 2.7241 5.6914 5.5523 27 7 1.2469 4.3037 4.3030 28 7 1.2910 3.1674 3.7005 29 6 2.4948 2.6514 3.8163 30 1 -0.3633 -0.0504 -1.0264 31 1 -0.3633 -0.8637 0.5568 32 1 -0.3633 0.9141 0.4695 33 1 -0.1201 3.0980 -1.2602 34 1 1.6753 -1.9900 -0.6280 35 1 3.2028 -1.1081 -0.3889 36 1 2.6285 -3.9608 1.4792 37 1 3.9056 -3.0287 0.6310 38 1 4.9433 -3.3500 2.7802 39 1 3.3771 -3.2266 3.6498 40 1 4.9785 -0.9996 2.2751 41 1 4.2473 -0.9928 3.9092 42 1 4.9402 0.2763 3.3494 43 1 6.1806 1.9536 4.6786 44 1 5.1192 3.9806 5.4250 45 1 3.0646 6.4187 5.0137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717372468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:22 Heat of formation + Delta-G solvation = 139.206536 kcal Electronic energy + Delta-G solvation = -32732.583738 eV Core-core repulsion = 28563.544541 eV Total energy + Delta-G solvation = -4169.039197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.15466 -39.80834 -37.85742 -37.49134 -36.55534 -35.19767 -33.43503 -31.53136 -31.12516 -30.61622 -29.25279 -28.37615 -25.79084 -25.47625 -24.61998 -23.22431 -22.91509 -22.27237 -20.87713 -20.72107 -19.33990 -18.26002 -18.02404 -17.08479 -16.88446 -16.51531 -15.91165 -15.58137 -15.31013 -14.90851 -14.65654 -14.54105 -13.70048 -13.60609 -13.36795 -13.16334 -12.94654 -12.70830 -12.53750 -12.32200 -12.10456 -11.89521 -11.86250 -11.58400 -11.37758 -11.25138 -10.86918 -10.78218 -10.67110 -10.60975 -10.50714 -10.27865 -10.06210 -9.89991 -9.87487 -9.75092 -9.30967 -8.74944 -8.44855 -7.82864 -7.79369 -6.36700 -5.64034 -2.88226 0.43094 1.23028 2.09074 2.80508 3.20147 3.38987 3.43605 3.46540 3.55589 3.83026 4.24624 4.28547 4.45841 4.54732 4.70170 4.81497 4.85937 4.95463 5.07751 5.22344 5.43673 5.51292 5.56898 5.61411 5.62513 5.71402 5.79685 5.90783 5.94398 6.04828 6.07705 6.11061 6.12459 6.23407 6.34428 6.37254 6.54515 6.72595 6.84836 7.14176 7.16516 7.35734 7.70561 7.80098 8.15602 8.35049 8.60318 8.84851 9.31277 9.34314 9.99996 10.46771 11.37370 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.006335 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.526491 B = 4418.762391 C = 6186.189785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.582 5.582 3 C -0.189 4.189 4 H 0.057 0.943 5 C 0.011 3.989 6 N -0.883 5.883 7 Si 0.898 3.102 8 H -0.287 1.287 9 H -0.288 1.288 10 H -0.290 1.290 11 C 0.139 3.861 12 C 0.119 3.881 13 H 0.064 0.936 14 C -0.126 4.126 15 C -0.133 4.133 16 C 0.090 3.910 17 N -0.610 5.610 18 C 0.542 3.458 19 O -0.407 6.407 20 C -0.048 4.048 21 C -0.123 4.123 22 C -0.130 4.130 23 C 0.046 3.954 24 N -0.402 5.402 25 C 0.295 3.705 26 O -0.431 6.431 27 N -0.245 5.245 28 N -0.228 5.228 29 C 0.239 3.761 30 H 0.001 0.999 31 H -0.018 1.018 32 H 0.082 0.918 33 H 0.253 0.747 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.170 0.830 43 H 0.152 0.848 44 H 0.161 0.839 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.253 -6.064 10.872 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.302 5.302 3 C -0.318 4.318 4 H 0.075 0.925 5 C -0.189 4.189 6 N -0.526 5.526 7 Si 0.729 3.271 8 H -0.214 1.214 9 H -0.214 1.214 10 H -0.217 1.217 11 C 0.009 3.991 12 C 0.013 3.987 13 H 0.082 0.918 14 C -0.165 4.165 15 C -0.171 4.171 16 C -0.033 4.033 17 N -0.350 5.350 18 C 0.329 3.671 19 O -0.273 6.273 20 C -0.057 4.057 21 C -0.148 4.148 22 C -0.151 4.151 23 C -0.077 4.077 24 N -0.095 5.095 25 C -0.004 4.004 26 O -0.230 6.230 27 N -0.096 5.096 28 N -0.074 5.074 29 C -0.013 4.013 30 H 0.019 0.981 31 H 0.001 0.999 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.186 0.814 43 H 0.170 0.830 44 H 0.179 0.821 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 11.586 -5.504 10.677 16.689 hybrid contribution 2.399 1.515 0.166 2.842 sum 13.986 -3.989 10.844 18.141 Atomic orbital electron populations 1.20769 0.81732 0.98293 0.95835 1.43841 1.02393 0.99850 1.84092 1.18981 0.96046 0.86209 1.30562 0.92504 1.24873 0.96568 0.97962 0.99483 1.70027 1.11796 1.27308 1.43476 0.86413 0.78853 0.84589 0.77263 1.21425 1.21376 1.21731 1.21132 0.96376 0.89329 0.92237 1.22457 0.95863 0.86370 0.94010 0.91810 1.22654 0.98667 0.97756 0.97409 1.22774 1.00736 0.95248 0.98329 1.22609 0.88581 0.93815 0.98337 1.47896 1.23805 1.14779 1.48495 1.16553 0.87182 0.80354 0.83036 1.91010 1.17888 1.74488 1.43956 1.20321 0.93667 0.91361 1.00343 1.22606 0.93116 1.01146 0.97910 1.20683 1.01100 0.93156 1.00200 1.21406 0.82733 1.00194 1.03377 1.43930 1.10598 1.17906 1.37040 1.21740 0.87034 0.87637 1.04001 1.84966 1.84864 1.20465 1.32690 1.74695 1.16124 1.10037 1.08708 1.75074 1.14159 1.01851 1.16278 1.22679 0.89321 0.93106 0.96220 0.98060 0.99935 0.89985 0.93599 0.94114 0.93237 0.90782 0.90717 0.90523 0.90961 0.91801 0.90573 0.81364 0.83042 0.82149 0.74533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.75 7.60 59.85 0.45 5.20 16 2 N -0.58 -14.70 1.70 -181.12 -0.31 -15.01 16 3 C -0.19 -5.17 6.00 -15.06 -0.09 -5.27 16 4 H 0.06 1.54 7.10 -52.49 -0.37 1.17 16 5 C 0.01 0.31 5.29 -17.43 -0.09 0.22 16 6 N -0.88 -26.83 10.18 55.49 0.56 -26.27 16 7 Si 0.90 23.62 29.55 -169.99 -5.02 18.60 16 8 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 9 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 10 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 11 C 0.14 2.75 5.34 -4.04 -0.02 2.73 16 12 C 0.12 1.98 3.31 -66.95 -0.22 1.76 16 13 H 0.06 1.18 8.11 -51.93 -0.42 0.76 16 14 C -0.13 -1.43 6.48 -24.90 -0.16 -1.59 16 15 C -0.13 -1.26 7.09 -24.58 -0.17 -1.43 16 16 C 0.09 1.04 4.91 -2.53 -0.01 1.03 16 17 N -0.61 -10.43 3.06 -164.35 -0.50 -10.94 16 18 C 0.54 11.50 5.20 -12.62 -0.07 11.44 16 19 O -0.41 -10.56 10.49 5.25 0.06 -10.51 16 20 C -0.05 -0.92 6.03 -102.69 -0.62 -1.54 16 21 C -0.12 -1.68 8.39 -38.72 -0.32 -2.00 16 22 C -0.13 -1.40 9.91 -40.09 -0.40 -1.80 16 23 C 0.05 0.57 10.93 -16.73 -0.18 0.38 16 24 N -0.40 -7.02 2.97 -62.51 -0.19 -7.20 16 25 C 0.30 5.34 9.41 -88.65 -0.83 4.51 16 26 O -0.43 -5.76 13.65 -18.84 -0.26 -6.02 16 27 N -0.24 -5.47 12.20 29.70 0.36 -5.11 16 28 N -0.23 -5.61 11.80 32.37 0.38 -5.23 16 29 C 0.24 5.10 7.75 -153.90 -1.19 3.91 16 30 H 0.00 0.03 7.87 -51.93 -0.41 -0.38 16 31 H -0.02 -0.44 8.06 -51.93 -0.42 -0.86 16 32 H 0.08 2.50 5.73 -51.93 -0.30 2.21 16 33 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 35 H 0.05 0.97 7.85 -51.93 -0.41 0.56 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.80 7.76 -51.93 -0.40 0.40 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.67 7.30 -51.93 -0.38 0.29 16 41 H 0.08 0.77 6.09 -51.93 -0.32 0.46 16 42 H 0.17 1.81 3.49 -52.49 -0.18 1.63 16 43 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 44 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.40 3.22 9.06 45.56 0.41 3.64 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -38.39 355.96 -8.35 -46.74 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.87 Total: -1.98 kcal Atomic # 6 Polarization: 21.49 SS G_CDS: -3.94 Total: 17.56 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: 0.31 Total: -69.76 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.20 Total: -16.52 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.02 Total: 18.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.39 -8.35 -46.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717372468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.947 kcal (2) G-P(sol) polarization free energy of solvation -38.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds