Wall clock time and date at job start Wed Apr 1 2020 04:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99831 * 2 1 4 4 H 1.08002 * 119.99807 * 156.77255 * 3 2 1 5 5 C 1.38807 * 120.00177 * 337.04056 * 3 2 1 6 6 N 1.31625 * 120.00157 * 358.98048 * 5 3 2 7 7 Si 1.86799 * 120.00286 * 178.97098 * 5 3 2 8 8 H 1.48491 * 109.47153 * 60.00281 * 7 5 3 9 9 H 1.48499 * 109.47434 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47070 * 300.00394 * 7 5 3 11 11 C 1.46499 * 119.99874 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47358 * 277.73104 * 11 2 1 13 13 H 1.08997 * 109.87102 * 66.35642 * 12 11 2 14 14 C 1.54320 * 109.88528 * 187.53176 * 12 11 2 15 15 C 1.55150 * 102.94658 * 141.61160 * 14 12 11 16 16 C 1.54919 * 101.57849 * 324.50057 * 15 14 12 17 17 N 1.47022 * 109.88214 * 305.33998 * 12 11 2 18 18 C 1.34777 * 125.64591 * 61.60379 * 17 12 11 19 19 O 1.21637 * 120.00133 * 6.60716 * 18 17 12 20 20 C 1.47208 * 119.99782 * 186.60415 * 18 17 12 21 21 C 1.38842 * 120.90029 * 9.83402 * 20 18 17 22 22 C 1.39931 * 119.42901 * 179.97438 * 21 20 18 23 23 C 1.35014 * 121.27057 * 359.97438 * 22 21 20 24 24 N 1.36253 * 121.58328 * 0.02562 * 23 22 21 25 25 C 1.36370 * 133.87922 * 179.97438 * 24 23 22 26 26 O 1.35710 * 126.33665 * 0.02562 * 25 24 23 27 27 N 1.31103 * 107.32977 * 180.02562 * 25 24 23 28 28 N 1.28699 * 110.31578 * 0.02562 * 27 25 24 29 29 C 1.31490 * 109.66778 * 359.71355 * 28 27 25 30 30 H 1.09001 * 109.46979 * 92.81333 * 1 2 3 31 31 H 1.08999 * 109.47121 * 212.80905 * 1 2 3 32 32 H 1.08997 * 109.47049 * 332.81188 * 1 2 3 33 33 H 0.96991 * 120.00178 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.47289 * 37.73475 * 11 2 1 35 35 H 1.09001 * 109.47141 * 157.73273 * 11 2 1 36 36 H 1.09003 * 110.72290 * 259.98006 * 14 12 11 37 37 H 1.09004 * 110.71756 * 23.24573 * 14 12 11 38 38 H 1.09000 * 111.00940 * 206.42725 * 15 14 12 39 39 H 1.08999 * 111.00618 * 82.57175 * 15 14 12 40 40 H 1.09005 * 110.36025 * 278.16658 * 16 15 14 41 41 H 1.08994 * 110.36494 * 155.85035 * 16 15 14 42 42 H 1.07999 * 120.28660 * 0.02862 * 21 20 18 43 43 H 1.08004 * 119.36558 * 180.02562 * 22 21 20 44 44 H 1.08002 * 119.20794 * 180.02562 * 23 22 21 45 45 H 0.96696 * 114.00104 * 89.99361 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1640 1.2238 0.3689 5 6 1.5381 2.3404 -0.4689 6 7 0.3070 2.2914 -0.9322 7 14 2.4620 3.9637 -0.4422 8 1 3.6904 3.8477 -1.2683 9 1 1.5945 5.0361 -0.9923 10 1 2.8353 4.2978 0.9557 11 6 2.1975 -1.2687 0.0006 12 6 2.2845 -1.8069 1.4302 13 1 1.2899 -2.0759 1.7859 14 6 3.2116 -3.0398 1.4715 15 6 3.9705 -2.8593 2.8126 16 6 4.1273 -1.3194 2.8763 17 7 2.8727 -0.7887 2.3128 18 6 2.3516 0.4285 2.5643 19 8 1.2495 0.7181 2.1387 20 6 3.1162 1.4076 3.3542 21 6 4.4473 1.1798 3.6767 22 6 5.1451 2.1316 4.4286 23 6 4.5491 3.2686 4.8468 24 7 3.2456 3.5393 4.5568 25 6 2.4099 4.5786 4.8420 26 8 2.7241 5.6914 5.5523 27 7 1.2469 4.3037 4.3030 28 7 1.2910 3.1674 3.7005 29 6 2.4948 2.6514 3.8163 30 1 -0.3633 -0.0504 -1.0264 31 1 -0.3633 -0.8637 0.5568 32 1 -0.3633 0.9141 0.4695 33 1 -0.1201 3.0980 -1.2602 34 1 1.6753 -1.9900 -0.6280 35 1 3.2028 -1.1081 -0.3889 36 1 2.6285 -3.9608 1.4792 37 1 3.9056 -3.0287 0.6310 38 1 4.9433 -3.3500 2.7802 39 1 3.3771 -3.2266 3.6498 40 1 4.9785 -0.9996 2.2751 41 1 4.2473 -0.9928 3.9092 42 1 4.9402 0.2763 3.3494 43 1 6.1806 1.9536 4.6786 44 1 5.1192 3.9806 5.4250 45 1 3.0646 6.4187 5.0137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717372468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:21 Heat of formation + Delta-G solvation = 106.428934 kcal Electronic energy + Delta-G solvation = -32734.005081 eV Core-core repulsion = 28563.544541 eV Total energy + Delta-G solvation = -4170.460540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.58325 -41.16656 -39.11450 -38.74217 -37.95113 -36.97435 -34.85524 -33.25516 -32.38385 -31.91666 -30.68219 -29.78005 -27.85772 -26.84361 -26.03171 -24.58542 -24.31954 -23.64092 -22.39099 -21.89918 -20.62095 -19.61440 -19.30443 -18.78636 -18.37001 -17.90864 -17.16170 -16.93527 -16.86497 -16.35685 -16.12054 -15.76209 -15.57529 -14.94628 -14.88767 -14.34475 -14.18531 -14.06855 -13.73349 -13.67143 -13.44789 -13.35502 -13.26456 -13.02410 -13.00551 -12.84899 -12.73036 -12.45296 -12.28340 -12.01771 -11.87841 -11.80621 -11.60572 -11.48138 -11.45941 -11.39246 -10.68188 -10.42580 -10.32909 -9.39357 -9.14251 -8.24315 -7.64242 -5.04131 -0.70355 -0.05123 0.76217 1.22934 1.30052 1.35200 1.47587 1.87746 2.22927 2.52468 2.58729 2.80811 3.06646 3.24515 3.53865 3.64640 3.73827 3.80622 3.87923 3.93816 4.14982 4.23427 4.39354 4.43889 4.51921 4.60963 4.66370 4.75830 4.77646 4.82224 4.92005 4.93760 5.03093 5.10939 5.12870 5.23066 5.28379 5.33118 5.54838 5.58479 5.61613 5.65033 5.84327 6.05966 6.25688 6.52889 6.96115 7.33333 7.37660 7.83852 8.08956 8.53072 9.40135 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.006335 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.526491 B = 4418.762391 C = 6186.189785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.210 3.790 2 N -0.597 5.597 3 C -0.175 4.175 4 H 0.056 0.944 5 C -0.052 4.052 6 N -0.943 5.943 7 Si 0.941 3.059 8 H -0.267 1.267 9 H -0.308 1.308 10 H -0.307 1.307 11 C 0.137 3.863 12 C 0.120 3.880 13 H 0.034 0.966 14 C -0.115 4.115 15 C -0.117 4.117 16 C 0.074 3.926 17 N -0.613 5.613 18 C 0.548 3.452 19 O -0.480 6.480 20 C -0.113 4.113 21 C -0.053 4.053 22 C -0.128 4.128 23 C 0.068 3.932 24 N -0.407 5.407 25 C 0.315 3.685 26 O -0.418 6.418 27 N -0.297 5.297 28 N -0.305 5.305 29 C 0.225 3.775 30 H -0.026 1.026 31 H -0.011 1.011 32 H 0.037 0.963 33 H 0.232 0.768 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.209 0.791 43 H 0.225 0.775 44 H 0.217 0.783 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.880 -8.012 14.861 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.318 5.318 3 C -0.306 4.306 4 H 0.074 0.926 5 C -0.244 4.244 6 N -0.593 5.593 7 Si 0.774 3.226 8 H -0.193 1.193 9 H -0.235 1.235 10 H -0.235 1.235 11 C 0.010 3.990 12 C 0.013 3.987 13 H 0.052 0.948 14 C -0.153 4.153 15 C -0.155 4.155 16 C -0.047 4.047 17 N -0.351 5.351 18 C 0.334 3.666 19 O -0.351 6.351 20 C -0.121 4.121 21 C -0.077 4.077 22 C -0.149 4.149 23 C -0.052 4.052 24 N -0.100 5.100 25 C 0.013 3.987 26 O -0.220 6.220 27 N -0.146 5.146 28 N -0.149 5.149 29 C -0.029 4.029 30 H -0.008 1.008 31 H 0.008 0.992 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.137 0.863 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.225 0.775 43 H 0.241 0.759 44 H 0.234 0.766 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 19.355 -7.476 14.751 25.458 hybrid contribution 0.541 2.092 -0.324 2.185 sum 19.896 -5.383 14.427 25.159 Atomic orbital electron populations 1.20152 0.83809 0.96121 0.93474 1.43820 1.01448 1.01277 1.85303 1.18825 0.95595 0.86911 1.29286 0.92643 1.25322 0.97259 1.00101 1.01732 1.70196 1.13652 1.25936 1.49553 0.85703 0.78345 0.82573 0.76019 1.19276 1.23495 1.23503 1.21388 0.95919 0.87120 0.94541 1.22299 0.96478 0.88399 0.91477 0.94808 1.22627 0.98036 0.95127 0.99537 1.22782 1.02512 0.93484 0.96736 1.23080 0.86507 0.95583 0.99533 1.48057 1.25503 1.13630 1.47868 1.17212 0.86675 0.81386 0.81313 1.91042 1.20885 1.76330 1.46806 1.20440 0.96196 0.91545 1.03870 1.23446 0.90187 1.01817 0.92225 1.21579 1.03816 0.91158 0.98341 1.22804 0.80454 1.01426 1.00547 1.44184 1.12117 1.16969 1.36734 1.21709 0.86402 0.88576 1.02005 1.84952 1.84860 1.19869 1.32348 1.74492 1.19117 1.10395 1.10581 1.74943 1.17293 1.03471 1.19214 1.23014 0.89186 0.94217 0.96473 1.00801 0.99247 0.94461 0.95780 0.93723 0.92461 0.89208 0.89202 0.86336 0.90810 0.89084 0.88456 0.77525 0.75890 0.76647 0.71392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.21 12.44 7.60 127.77 0.97 13.41 16 2 N -0.60 -32.17 1.70 -726.94 -1.24 -33.41 16 3 C -0.18 -10.17 6.00 84.03 0.50 -9.67 16 4 H 0.06 3.10 7.10 -2.91 -0.02 3.08 16 5 C -0.05 -3.26 5.29 84.86 0.45 -2.82 16 6 N -0.94 -64.00 10.18 21.65 0.22 -63.78 16 7 Si 0.94 52.17 29.55 68.60 2.03 54.19 16 8 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 9 H -0.31 -17.68 7.11 99.48 0.71 -16.97 16 10 H -0.31 -17.32 7.11 99.48 0.71 -16.62 16 11 C 0.14 5.53 5.34 86.38 0.46 5.99 16 12 C 0.12 3.86 3.31 45.34 0.15 4.01 16 13 H 0.03 1.29 8.11 -2.39 -0.02 1.27 16 14 C -0.11 -2.12 6.48 31.78 0.21 -1.91 16 15 C -0.12 -1.47 7.09 31.99 0.23 -1.24 16 16 C 0.07 1.26 4.91 86.86 0.43 1.68 16 17 N -0.61 -19.75 3.06 -792.13 -2.42 -22.17 16 18 C 0.55 23.49 5.20 86.60 0.45 23.94 16 19 O -0.48 -26.85 10.49 -4.15 -0.04 -26.90 16 20 C -0.11 -4.12 6.03 -18.61 -0.11 -4.23 16 21 C -0.05 -1.10 8.39 22.82 0.19 -0.90 16 22 C -0.13 -1.60 9.91 21.94 0.22 -1.38 16 23 C 0.07 1.19 10.93 83.26 0.91 2.10 16 24 N -0.41 -12.97 2.97 -462.36 -1.37 -14.35 16 25 C 0.31 11.01 9.41 179.66 1.69 12.70 16 26 O -0.42 -9.86 13.65 -90.31 -1.23 -11.10 16 27 N -0.30 -13.95 12.20 -173.36 -2.11 -16.06 16 28 N -0.30 -16.03 11.80 -51.50 -0.61 -16.64 16 29 C 0.22 9.61 7.75 135.67 1.05 10.66 16 30 H -0.03 -1.64 7.87 -2.39 -0.02 -1.66 16 31 H -0.01 -0.59 8.06 -2.39 -0.02 -0.61 16 32 H 0.04 2.54 5.73 -2.39 -0.01 2.53 16 33 H 0.23 15.78 8.31 -92.72 -0.77 15.00 16 34 H 0.04 1.72 8.13 -2.39 -0.02 1.70 16 35 H 0.06 2.18 7.85 -2.39 -0.02 2.17 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.46 7.76 -2.38 -0.02 1.44 16 38 H 0.12 0.65 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.16 7.30 -2.38 -0.02 1.15 16 41 H 0.10 1.24 6.09 -2.39 -0.01 1.23 16 42 H 0.21 2.64 3.49 -2.91 -0.01 2.63 16 43 H 0.22 -0.09 8.06 -2.91 -0.02 -0.11 16 44 H 0.22 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.43 5.35 9.06 -74.06 -0.67 4.68 16 Total: -1.00 -106.67 355.96 1.39 -105.28 By element: Atomic # 1 Polarization: -7.79 SS G_CDS: 0.38 Total: -7.41 kcal Atomic # 6 Polarization: 44.54 SS G_CDS: 7.79 Total: 52.34 kcal Atomic # 7 Polarization: -158.87 SS G_CDS: -7.54 Total: -166.41 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -1.28 Total: -38.00 kcal Atomic # 14 Polarization: 52.17 SS G_CDS: 2.03 Total: 54.19 kcal Total: -106.67 1.39 -105.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717372468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.708 kcal (2) G-P(sol) polarization free energy of solvation -106.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds